Agra011304.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Aphodius granarius
Gene Symbol
RHOBTB1
Assembly
GCA_963971325.1
Location
OZ020223.1:7392083-7397283[-]

Transcription Factor Domain

TF Family
BTB
Domain
zf-C2H2|ZBTB
PFAM
PF00651
TF Group
Zinc-Coordinating Group
Description
The BTB (for BR-C, ttk and bab) [6] or POZ (for Pox virus and Zinc finger) [1] domain is present near the N-terminus of a fraction of zinc finger (Pfam:PF00096) proteins and in proteins that contain the Pfam:PF01344 motif such as Kelch and a family of pox virus proteins. The BTB/POZ domain mediates homomeric dimerisation and in some instances heteromeric dimerisation [1]. The structure of the dimerised PLZF BTB/POZ domain has been solved and consists of a tightly intertwined homodimer. The central scaffolding of the protein is made up of a cluster of alpha-helices flanked by short beta-sheets at both the top and bottom of the molecule [2]. POZ domains from several zinc finger proteins have been shown to mediate transcriptional repression and to interact with components of histone deacetylase co-repressor complexes including N-CoR and SMRT [5, 3, 4]. The POZ or BTB domain is also known as BR-C/Ttk or ZiN.
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 3 7.3e-08 2.3e-05 25.4 0.0 8 48 261 302 256 318 0.80
2 3 2.8e-06 0.00087 20.3 0.0 52 101 361 409 348 417 0.86
3 3 4.4e-17 1.4e-14 55.0 0.0 5 108 433 535 431 537 0.94

Sequence Information

Coding Sequence
ATGGACAATGAACAGCCCCATCAGGAACTCGTCAAGTGTGTTGTGGTTGGCGATACGGCAGTCGGGAAGACCCGTTTGATATGTGCCAGAGCTTGCAACAAGCAAGTAAGCTTAGCCCAACTGTTGGCGACGCACGTGCCGACAGTTTGGGCTATCGACCAATATCGGATATACAAGGATGTATTGGAACGTTCGTGGGAAGTTGTCGATAGTGTTAACGTTTCGCTGAGGCTATGGGACACGTTCGGGGATCACGAGAAAGACAGGCGATTCGCCTACGGAAGGTCAGATGTGGTGTTGCTATGTTTCAGCATAAATAACCCGGTCTCTTTGAGAAATTGCCGGCTTATGTGGTATCCGGAAATCAGGAGATTCTGCCCGAATACTCCTGTGATTTTGGTCGGATGCAAGAACGATCTACGGTACATGTATCGGGATGAGGCGTACCTCAGCTACTTTAGGGATCGGAGCCCTTTCGTCAGGGCTACACGGAAGAGCGATTTGGTTATGCCGGATGAAGCTAGAGAGGTAGCTCGCGAATTAGGTCTATACTATTACGAAACATCCGTCTTAACATATTACGGCGTGAACGAGGCATTCGAGAATGCGATCAGGGCAGCTCTGATGGCGCGTCGCCAGCAGCGCTTCTGGATGACAAACCTGAAGAAGGTGCAACGCCCACTCCTACAAGCGCCATTCAAACCGCCGCCTCCGCCCAAACCGGAAGTGATCGTCTCGCCCTCGATATGGCACGAGAACGCCTGCCAGCTGTGGCTGGACAGGGCGCACGTCGACGTCATACTAGTCGCGGGGCCCGTTGCCTTCCCCGCGCACCGTTTTCTACTCTCCGCAGCTAGTCCCGTCCTATATAGGCTGCTCACTGCCGACTTGCTCGCCCGTAGTACCAGTGATTCCAGTATGGTGAGTTCACTGGGTGATTTTGCGGACGAGACTGAGTGTCTGGTGAAGGCGGAACAGAAGGTGTGCAAGCGGCGTGCCAGTTGCCAGGGGTTGCCGTCCAGCAAGGAGATGGACCATCCGGCATTCCAGTCTGTGCGGTGCGTCGAAGGGCAGACCATTGTTACCGTCAGTAGGATGGTCAGTCCGTCGGCGCTCCAGCAGTGTCTGCAATTTGCCTATACCGGCTCGCTGGAACACAGAAATATGGACGCACAGGAGCTCCACCGAGTTGCCGAACTCCTCGAATTACCTCACCTCCAGCTGATGCTATCCACCGACTACAGAACAGACGAGAACTACGAGGCTTTCCTCCGTCGCAGGATAGGCGACATCTGCCTCGAGCAGGGCCTCTTCGCCGACGTCATCTTCGAGCTGGACGACGGGGCATGCGCAGCTCACAAACCCATGCTAGCAGCTCGCTGTGACGTCATGAAGGCCATGTTCGGCGGGGATTTCCGTGAGGGCCAAGCAAAAGTCATAGAATTCCCCGGCGTCCGAGAGTACACATTCCACAAGCTTCTGTGCTTTCTTTACACCGATGAAATACCAGCAGTTGTGGCAACTAGATGTGTAAACTTGTTAGAGTTGGCCAATAGATTATGTTTGCCGAGATTGGTTGCATTGGTTGAACAAAGAGTCATCGAGGATTTAGAACAGCTACCATCTTCTGAGGCGATTGAACAGTGCCTAAGATTATTAGAGCCTGTGAAATTGCATAACGCCCATCAATTGGCTGATTGGTGTATGAATCACCTGTGTGTTAATTATAATAAGCTGTGTAAGATGTCGCCGAGGAGTTTGAGATTATTACATCCCGATAATCAGGCGTACCTGGTCGAGCATAGATGGCCCCCCGTCTGGTATCTGAAGGATTATGATTACTATCAGAAGTGTCTGGCGGAACGCGATCGGGAGCAGAAAACCCCGATCAAGAATAGCTCGGGGTGTCTTTGTTTTACGAGGAAGTCTGAATCCGATCCTGCACTATCCACCTCTGATAAACTGTGA
Protein Sequence
MDNEQPHQELVKCVVVGDTAVGKTRLICARACNKQVSLAQLLATHVPTVWAIDQYRIYKDVLERSWEVVDSVNVSLRLWDTFGDHEKDRRFAYGRSDVVLLCFSINNPVSLRNCRLMWYPEIRRFCPNTPVILVGCKNDLRYMYRDEAYLSYFRDRSPFVRATRKSDLVMPDEAREVARELGLYYYETSVLTYYGVNEAFENAIRAALMARRQQRFWMTNLKKVQRPLLQAPFKPPPPPKPEVIVSPSIWHENACQLWLDRAHVDVILVAGPVAFPAHRFLLSAASPVLYRLLTADLLARSTSDSSMVSSLGDFADETECLVKAEQKVCKRRASCQGLPSSKEMDHPAFQSVRCVEGQTIVTVSRMVSPSALQQCLQFAYTGSLEHRNMDAQELHRVAELLELPHLQLMLSTDYRTDENYEAFLRRRIGDICLEQGLFADVIFELDDGACAAHKPMLAARCDVMKAMFGGDFREGQAKVIEFPGVREYTFHKLLCFLYTDEIPAVVATRCVNLLELANRLCLPRLVALVEQRVIEDLEQLPSSEAIEQCLRLLEPVKLHNAHQLADWCMNHLCVNYNKLCKMSPRSLRLLHPDNQAYLVEHRWPPVWYLKDYDYYQKCLAERDREQKTPIKNSSGCLCFTRKSESDPALSTSDKL

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
iTF_01121805;
90% Identity
iTF_00466497;
80% Identity
-