Agra018154.1
Basic Information
- Insect
- Aphodius granarius
- Gene Symbol
- egg
- Assembly
- GCA_963971325.1
- Location
- OZ020224.1:33452392-33473066[-]
Transcription Factor Domain
- TF Family
- MBD
- Domain
- MBD domain
- PFAM
- PF01429
- TF Group
- Unclassified Structure
- Description
- The Methyl-CpG binding domain (MBD) binds to DNA that contains one or more symmetrically methylated CpGs [2]. DNA methylation in animals is associated with alterations in chromatin structure and silencing of gene expression. MBD has negligible non-specific affinity for DNA. In vitro foot-printing with MeCP2 showed the MBD can protect a 12 nucleotide region surrounding a methyl CpG pair [2]. MBDs are found in several Methyl-CpG binding proteins and also DNA demethylase [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 3 1.1 7.3e+03 -2.5 0.0 30 53 425 448 415 459 0.73 2 3 0.26 1.7e+03 -0.4 0.0 30 42 675 687 643 691 0.67 3 3 1.1e-13 7.2e-10 39.2 0.0 5 71 717 776 713 781 0.89
Sequence Information
- Coding Sequence
- ATGTCTGAATCTATGGAAGTCGATTCTGTGTCTCAGGCATCGAAACGCAGCAAAACCGATATCACACCCAGCGAAATAGTGATACTAGACGACGACGAAACACCCACAACcgaagataacctaaaaaacgaCTCGAAAAAACAGGATTCCCTCATCTCAATATGCGATTTTATCGATCTAGTGAAGACAGAGCTAACGGCGAACACGAAATGCATAAACTACGCTTGCAAAAGCGGTGTGAACATGCTAGAACCTCCCGGCTTCTGCCTGTCTTACTACCGCATAAAAAACAAGGTTAAGAAACGACAGCAAGTTTGCTTGGAGTGCTACGAAGAAGCCGTCACGCATTACGATACTCTTGTGGCAGCGGCTAAGAGTAACATTCCCCTCTCAGAGTTAAAAGTACCGTTTCGTAATGACGTAGTTGAAATTGATGATTCCGACTCGGATTCCGAAGCTGAAATAGTTGCTGCGGACGCAGAAGCGATAAAAATGTTCGAGGAGAACTTCGACAAGGCTATGAGCGATGTTTTAATCAAGTATAACTTCAACGCGCAAGTTCACGACAGCTGCGAGAGCTTGATAAAAGATACGGATGCTTTAGCAGATTCCTTCAACGAAGTAAAAACAATGTTCGATAGTATACGTTCGGAAACGGATAAAATGATTTTTGACATGTCGAACATGATGCGGTCCGATAATATGGAGCTCCCACCGTTGAATATCGTCGACAGGAAGGCCCCCGTGCGAAGACAACCTTATAAAACCACGTCTCCAAGAGCAACACCCCAAACAACCAAGCCaaGATCAACTGTATCGAATTCATCCCCAAATCTCATGTTGAAAAGCGCCTTACAGAAACAAGTTGTTTCCAACGTTCCGGCCACTCTGTCGCCTGTGCAAGGGGCTACGCCTCCTCCGATTAGACCGGTAGCGGCTGCTAACCTCTCGGCTGCTAGCTGCTCGATTGTTACGGGGCCCCCGGCCCCCGTACGCAACGAACCCAACCCTGAGTCTATCGTGGGGCTCACCGGAGATATAGTGATAATTCCTGCGGATTTACCACCGTTGGGAGAAATAGAGAAACCccctttgaaaattgGTGGTATGTATTATGCTAATCGTTCGGAGATGATCGGGGCATGGATGAAGGTACAATTGACGGATGTAGTGACAGCTGGTAGTTTGAAAAATGGTCAGGTTTTCTCGCAAACCGTGTACGAGATCTCTGTTGAGAATAAGCAAAAGGGCGTGGTGAAAAAGTTTGTTACGGGGAAGGAGATTGCGTATTCTAGCCCTCCGGGGGTCCAGCTGGACCGGGGGACCCGTGTCATAGCGGTGTTCAGGGAGACAACTCCTGCTGGGGAGATTAAAAAGACGAAGAAGGACTCCTACTACCCCGGTATCGTGGCTGAGCCTCTGCAGCCGGCGAATAAATATCGTTATTTAATCTTTTTTGATGACGGTTACGCCCAATACGTCTCGCACAACAACGTGTACCTAATATACGAATCGAACAAGAACGTGTGGGAAGACGTGAACGTGAATTCCCGTGCCTTCGTCAAGAAATACCTTGAGAACTACGATACAAGGGCCATGGTTCGTTTCCTCAAAGATCAAACCGTCCGAACTGAATATAACGGTAAATGGTGGGTGACGACTGTTATAAACGTCGATTGTTCTTTGGTGCAAGTTTTCTTTGACGATATCAGTCGTATTGAGTGGATATATCGTGGGTCAACGCGTTTCAGCCCCATGTTTGAGCAAGAACAGGCTGCGGCAAACCGGCAACAGAAACAGAGGTTTACCAGGAAGCCTAATAATTCAGGCCCGTATGTTGAGTTTACGAGATCCGACGGATCTGCCACCAGTGGGGCCCCCTCGGGGGCCATCCTAGACACCCAACAGCAccagcaacagcaacaacagCAAAGATCCGTTGCCAGAAAAAGTACATCAAAGCCTGCTAACAATATTGCGTCTAACATGAAGCCATTTTTACCTGCCGACTTAGAAGCACCTGCCACCAAGATTGTGTATTACACACCACGTCGACAAAAACCGAAAACTAACCACTTTGAGACGCATAACTGCGGCCCTGGGTGCAGGGACTACATCTATTGCCAACTGAACAGGATGAAAGGGTACAGTCCTTTGGCAAAACCTCTGTTATGCGGTTTCTACCGGTTACTGTACAAGGTCAAGCATAAGAAGATCGTGGTTTACAGGGCACCCTGCGGGAGGACCCTAAGAAACATGTCGGAAGTCCACAGATATCTACGTCTAACGAGATCAGACCTAACGgtcgatttattcgattttaacGTCTTCGTACGGTGTCTCGCGGAATTCATGGTCGAGGCGAAGAGTATTATACTAAAGGATCTGTCACAGGGTAAAGAGGAATGTCCGATAACCGTCGTGAACTACATGGATAGTAAACTACTGGATTTCTGTAATTATTCGACCAAACGGCAACCGATGGAAGGGGTGATGTTGAATTTAGATAGCGATTTCCTCGTCGGTTGCGATTGCGTTGATGATTGCTCGGATCGTAGTAAATGCTCGTGCTGGAAGCTAACACTCGGTTGTCTCAAGTATATGGATAAGGATACAGACCCGGAGGCTGTCGGGTATCAGTATAGGAGACTTCCGGAGCACATTTTTTCCGGGATATACGAATGTAACCAGCGGTGTAAATGTGCATCGACTTGTCTGAATCGTGTTGTCCAAAATCCCATGCAACACAAGCTACAGGTGTTCAAGACAGACTCCCGAGGATGGGGGATCCGATGTCTCAACGATATTCCGCAGGGCTCCTTCATTTGTATCTACGCAGGCAGTTTGCTAACGGAAGATATCGCCAATAATGACGGAAAATCCTACGGCGACGAATACCTCGCCGAACTCGACTTCATCGAGACGGCCGAACAGACAAAAGAAGACTACGAAGAGGACCCCTACCACGAAGAGCTAGCCAAAGAGAAGACACCCGAACCCAGCGACGAAGAAGAACCGGAAGAAGACCACGACAACGAGCTGGATCGTCTTCGAGAACGCAAAGAGGACTACGATTTTGTCCCGAGCAGTTTTGTACCGAAAAAAGGCGCTCCGAAGGAAGAAACCGGCATTCGTTCGCGACTCAGGCAGAGGAAGAAGGGTGATACTAAAGCCTCAGGGAACAAGAAAGAGAAAAAATCAGAGGAGAAAGGCAAGACAGACAAGGAAAAAAACGAAAAAGCCAAGGCGAAGCCGTCACCGCCCGCTGAAGATGATGATACGGTTATGATCAGCGATGACGAGGATTACGTCCCAAGGGAACCCAGCAGTTTCATCCCGAAAGATGAACCAGCTGACGAGGACAGAAGAAAGTACCGCTCCGTAAGAGAAATGTTCGGATCGGACGAAGACGTATACATAATGGACGCAAAAAGTACAGGAAACATAGGCAGATTTTTAAACcatTCCTGTTCACCGAATATTTTCGTGCAGAACGTTTTTGTGGATACGCACGATCCCCGTTTTCCGTGGGTTGCGTTCTTCACGTTGAGTTACGTCAGAGCAGGTACAGAATTGACCTggaattataattataacattGGCAGTGTTCCTGGAAAGGCTTTGGACTGTTATTGCGGGTCGAGTGAGTGTAAAGGTCGATTATTGTAA
- Protein Sequence
- MSESMEVDSVSQASKRSKTDITPSEIVILDDDETPTTEDNLKNDSKKQDSLISICDFIDLVKTELTANTKCINYACKSGVNMLEPPGFCLSYYRIKNKVKKRQQVCLECYEEAVTHYDTLVAAAKSNIPLSELKVPFRNDVVEIDDSDSDSEAEIVAADAEAIKMFEENFDKAMSDVLIKYNFNAQVHDSCESLIKDTDALADSFNEVKTMFDSIRSETDKMIFDMSNMMRSDNMELPPLNIVDRKAPVRRQPYKTTSPRATPQTTKPRSTVSNSSPNLMLKSALQKQVVSNVPATLSPVQGATPPPIRPVAAANLSAASCSIVTGPPAPVRNEPNPESIVGLTGDIVIIPADLPPLGEIEKPPLKIGGMYYANRSEMIGAWMKVQLTDVVTAGSLKNGQVFSQTVYEISVENKQKGVVKKFVTGKEIAYSSPPGVQLDRGTRVIAVFRETTPAGEIKKTKKDSYYPGIVAEPLQPANKYRYLIFFDDGYAQYVSHNNVYLIYESNKNVWEDVNVNSRAFVKKYLENYDTRAMVRFLKDQTVRTEYNGKWWVTTVINVDCSLVQVFFDDISRIEWIYRGSTRFSPMFEQEQAAANRQQKQRFTRKPNNSGPYVEFTRSDGSATSGAPSGAILDTQQHQQQQQQQRSVARKSTSKPANNIASNMKPFLPADLEAPATKIVYYTPRRQKPKTNHFETHNCGPGCRDYIYCQLNRMKGYSPLAKPLLCGFYRLLYKVKHKKIVVYRAPCGRTLRNMSEVHRYLRLTRSDLTVDLFDFNVFVRCLAEFMVEAKSIILKDLSQGKEECPITVVNYMDSKLLDFCNYSTKRQPMEGVMLNLDSDFLVGCDCVDDCSDRSKCSCWKLTLGCLKYMDKDTDPEAVGYQYRRLPEHIFSGIYECNQRCKCASTCLNRVVQNPMQHKLQVFKTDSRGWGIRCLNDIPQGSFICIYAGSLLTEDIANNDGKSYGDEYLAELDFIETAEQTKEDYEEDPYHEELAKEKTPEPSDEEEPEEDHDNELDRLRERKEDYDFVPSSFVPKKGAPKEETGIRSRLRQRKKGDTKASGNKKEKKSEEKGKTDKEKNEKAKAKPSPPAEDDDTVMISDDEDYVPREPSSFIPKDEPADEDRRKYRSVREMFGSDEDVYIMDAKSTGNIGRFLNHSCSPNIFVQNVFVDTHDPRFPWVAFFTLSYVRAGTELTWNYNYNIGSVPGKALDCYCGSSECKGRLL
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00981010;
- 90% Identity
- -
- 80% Identity
- -