Agra020135.1
Basic Information
- Insect
- Aphodius granarius
- Gene Symbol
- PHF20L1
- Assembly
- GCA_963971325.1
- Location
- OZ020225.1:18895623-18899621[-]
Transcription Factor Domain
- TF Family
- MBD
- Domain
- MBD domain
- PFAM
- PF01429
- TF Group
- Unclassified Structure
- Description
- The Methyl-CpG binding domain (MBD) binds to DNA that contains one or more symmetrically methylated CpGs [2]. DNA methylation in animals is associated with alterations in chromatin structure and silencing of gene expression. MBD has negligible non-specific affinity for DNA. In vitro foot-printing with MeCP2 showed the MBD can protect a 12 nucleotide region surrounding a methyl CpG pair [2]. MBDs are found in several Methyl-CpG binding proteins and also DNA demethylase [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 1 7.1e-16 4.6e-12 46.2 0.1 7 70 393 455 387 462 0.91
Sequence Information
- Coding Sequence
- ATGGGCAGAAAGTGCGCCATTTCTGTGTGTCTGTCAGATTCGAATAGGGATGCGGATCGAGGTGTCACTTTCCACAAGATTCCTATGCACCCTGATATCCGCCCGAAGTGGATGTCTCTGTGCCGTATACCTGAAGATAAGAAATTGATGAAAGTGATTTATGTGTGTTCGCGACATTTCTTGAACGCCGATTTCTGCAACTTTAAAGGGAAGAAGTACATGCTTAAGCAAGGCGTGCTGCCAAGTGTTTTCCCGTGGAGTAAACAAAGTAAAACAGAGCAAACCGCGCCGCTTAGCGGAATCGAGCCGGAAATTAAACTGGAAGAAGGTGATTCTGAATTAGCCGTAAATTCAAGCTTTGATGAAACTGAAGAACCAGAGGTTAAAATCGAAATTCCCGAGAGCCAACTCCACGATTTTAACGCCACTTTGTCAATAAAAACCGAAGACACCACCGTAAATATGAATAAACAAGAAATTCTAAGTCCACACCAGTCGACAACCATCGAACAAAAGGTGAAGACCATCGATACAACAACGGGTCCGTTGACTTTTGCCCCTAACACAAGGATCGAGGCGTTGGATTTCAACCAGTCTTGGTGCCCGGCTCGGATTTTGGAAGTGGATTATCAAGAAAATGAGGTGTTAGTGCATTTCGATAAATATTCGAGCAAATACGACGAGTGGATTTGTATGAACAGTTCGACGTTAAGGGCTCTAACCCCGGTAGTGCAACAGCAGAGTTCTCCTAAAAACACAACTCTCTACGAAGTTGGTGAAAGATGTTTGGCATCATGGAGCGATTCACGAAAATTCCCGGCTACCGTTGCCAAAGTTCTCGAGAAAGaTTCATACGAGGTACACTTTGACGATGGCTTCACGAAAATATTGAAATCTCACAGAATGGCAAAGGCTTCGGGCAAACCGATGCAGCTGTCTCCGCTGTTCAATCCGGCCAGGGGTTCCAAACAGGAGAGGCGTGACCGCAAGCGGAAGTTGAATGTCGCCTCTCTGTTTGGAAAACGCGGAAGGGCCGGTAGCCAGGAAGACCGGAACGCCAGCTCCACGGACCTCGACGATTCCGAATATTGGACACCAAAATGGGAGAATGGTCGGCCAGTCGGTGAAAACTCCGTTATTGAAATGCATGATGGCCCGAAAAAGTCGATCATTGTCCCGGACCCACGGTTGCCGCCCCACTGGGTGAAGCACATGACTCAACGGACCCACGGCGCATCCTGTGGCAAGTGGGATACCATCATCGTCAAtCCGGAGGGTCGTAGATTTAGGATGAGAAATGAGATAAAGTCATACATAGAAGACCATCCTGAACAAAATCTCTCGGAGAGCATGTTTAACTTTGCACTCCATCGTCGGTCTAAAAAATCATCTGAATCACGGAAATCCTTACCATCTGAAACGATTGTGCACGATCCGGCAGCGGAGACGTTGACTGAAGAAGAATTGAAAGTCACTTATAACGTCGTCGCTTATAACGTCCAGTCGCATATAGCGGCGAAAACTGAAAGTTTTGGTTGGTTTTCCATATAA
- Protein Sequence
- MGRKCAISVCLSDSNRDADRGVTFHKIPMHPDIRPKWMSLCRIPEDKKLMKVIYVCSRHFLNADFCNFKGKKYMLKQGVLPSVFPWSKQSKTEQTAPLSGIEPEIKLEEGDSELAVNSSFDETEEPEVKIEIPESQLHDFNATLSIKTEDTTVNMNKQEILSPHQSTTIEQKVKTIDTTTGPLTFAPNTRIEALDFNQSWCPARILEVDYQENEVLVHFDKYSSKYDEWICMNSSTLRALTPVVQQQSSPKNTTLYEVGERCLASWSDSRKFPATVAKVLEKDSYEVHFDDGFTKILKSHRMAKASGKPMQLSPLFNPARGSKQERRDRKRKLNVASLFGKRGRAGSQEDRNASSTDLDDSEYWTPKWENGRPVGENSVIEMHDGPKKSIIVPDPRLPPHWVKHMTQRTHGASCGKWDTIIVNPEGRRFRMRNEIKSYIEDHPEQNLSESMFNFALHRRSKKSSESRKSLPSETIVHDPAAETLTEEELKVTYNVVAYNVQSHIAAKTESFGWFSI
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00138033;
- 90% Identity
- iTF_00138033;
- 80% Identity
- iTF_00136955;