Agra002261.1
Basic Information
- Insect
- Aphodius granarius
- Gene Symbol
- bab2
- Assembly
- GCA_963971325.1
- Location
- OZ020221.1:1812736-1825565[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 4 1e-11 7.5e-09 36.0 0.0 1 39 386 425 386 429 0.90 2 4 9.6e-13 7e-10 39.3 0.1 1 39 440 478 440 481 0.95 3 4 2.6e-18 1.9e-15 57.1 0.0 1 45 495 540 495 540 0.98 4 4 3.7e-16 2.7e-13 50.2 0.0 1 39 547 586 547 589 0.94
Sequence Information
- Coding Sequence
- ATGTCTGGTGGTCAGCACTACTGCTTACGATGGAACAACTATCAGAGCAACATGACGAGCGTTTTCCACCAGCTGCTGCAGAATGAAGCCTTCGTGGACGTCACTCTGGCATGCAATGATCTGTCGCTGAAGGCACACAAGGTCGTCCTCTCAGCGTGTTCATCCTTCTTTCAAAAACTCCTGCTCGAGAACCCGTGCAAGCATCCCACGATCATAATGCCCCATGACGTTTGCTATGCGGATCTCAAATTCATCATCGAGTTCGTCTACAAAGGTGAAATCGATGTTTCCCAAGCTGAGTTACAGTCGCTCCTCAAGACGGCAGATCAATTAAAAATCAAAGGGCTGTGCGAATCCCCAGACCACGAAGACGATACCGTGGACACGTTCTCATTCGACGGCAGGAAACACAACAAAATCCGCAGGCTGGTGTCCCCAAAACCGCACTACAAAGTGACGGACAACAACAACCGTAAACACAAATACAAGAGGCCGGAGAGGAGACGGTCACCAGCAAGCCAAGAGGATAAGGAGAACAATAACAAGGACAATGCCGTTTCACTGAATAACAATTCATCAGATGACGAGGATGAGATGCCAATAGCTTTGGATGAGGAAAGCAGGAAACGAAAGATTAGCGAGTCGCAAACTAAACCGATTAATATGACTAGTCATGGGCCGTTAGCAGAACAGACTTTCTCGTTCTCTCAGTTCGGTGTGGATAATGATGATTTTCCACCGGAACCGCCGGCCCCGACCGCTATCCCTGTCGGGAACGTAGACATGCATGACCACTCTCCCACTAGAACATTACTGACTAACTCTTCAATGCATAGGACTGATCTATCAGATTCAATCGTTAAGTATGTCGATATTAAGAAGGAAACCGAATTTGAAACTCTGCATGGTTACGACCGCGAACAACCGTCCATATTGGACATGGAGGCCTCCCAAATGTCAGGACCTGATCACTCCATGGACAGCCACGATGACACCAAGCCAGAACTACACACAATGATGATAACGCCGGAATTGATGGGAATGATGCCGCATTCATTACAACATGGATTAGACTCTGGAGATGGTCATTTGAAGAGTAACGGCCATTCGGACCATACAGGTGGAAGGTCGCATGGTGGGGGGCCGAAAACATGGACGCAGGAAGACATGGAACTTGCCTTAGACGCCCTTAGGAATCATAATATGAGCTTAACAAAGGCATCGGCGACGTATGGAATACCCTCCACAACATTATGGCAACGAGCGCATAGATTAGGTATAGACACACCCAAAAAAGAAGGTCCCACGAAATCCTGGACTGAAGAAAATTTGAATTCAGCCCTTGAAGCCTTGAGGACAGGTACGATTTCCGCGAACAAGGCGAGCAAAGCGTACGGAATCCCTAGTAGCACCTTGTATAAAatcgccaggagagagggtatACGATTAGCGGCTCCTTTCAACGCGGCACCTACCACCTGGACGCCAGAAGACCTGGAGAAAGCCTTGGAGTCCATTCGAACTGGACAAACGTCGGTACAAAAAGCATCGACGGAATTTGGAATTCCTACGGGGACCCTTTATGGAAGATGCAAGAGGGAAGGCATCGAGTTGTCAAGGTCGAATCCGACGCCATGGTCTGAAGATGCCATGGGAGAGGCGTTGGAAGCTGTTAGGTTAGGTCATATGTCAATAAATCAAGCTGCCATACACTATAATCTACCATACTCGTCACTTTACGGCCGCTTCAAGCGTGGTATAAAATACGATGCTGATAATATAGACGCAAATTCTGATAGTCAGTCGCATTTGGACGCGCAGTCGCATCTAGAAGCCCAATCGCAAATGATGGATTACTCAAACTCGCATCAGCAGCAGATACAATATCAGCAACATCAGCATCCACCGAATAGCTGA
- Protein Sequence
- MSGGQHYCLRWNNYQSNMTSVFHQLLQNEAFVDVTLACNDLSLKAHKVVLSACSSFFQKLLLENPCKHPTIIMPHDVCYADLKFIIEFVYKGEIDVSQAELQSLLKTADQLKIKGLCESPDHEDDTVDTFSFDGRKHNKIRRLVSPKPHYKVTDNNNRKHKYKRPERRRSPASQEDKENNNKDNAVSLNNNSSDDEDEMPIALDEESRKRKISESQTKPINMTSHGPLAEQTFSFSQFGVDNDDFPPEPPAPTAIPVGNVDMHDHSPTRTLLTNSSMHRTDLSDSIVKYVDIKKETEFETLHGYDREQPSILDMEASQMSGPDHSMDSHDDTKPELHTMMITPELMGMMPHSLQHGLDSGDGHLKSNGHSDHTGGRSHGGGPKTWTQEDMELALDALRNHNMSLTKASATYGIPSTTLWQRAHRLGIDTPKKEGPTKSWTEENLNSALEALRTGTISANKASKAYGIPSSTLYKIARREGIRLAAPFNAAPTTWTPEDLEKALESIRTGQTSVQKASTEFGIPTGTLYGRCKREGIELSRSNPTPWSEDAMGEALEAVRLGHMSINQAAIHYNLPYSSLYGRFKRGIKYDADNIDANSDSQSHLDAQSHLEAQSQMMDYSNSHQQQIQYQQHQHPPNS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00980857;
- 90% Identity
- iTF_00980857;
- 80% Identity
- iTF_00137106;