Agra002513.1
Basic Information
- Insect
- Aphodius granarius
- Gene Symbol
- foxf1-b
- Assembly
- GCA_963971325.1
- Location
- OZ020221.1:4655438-4659888[-]
Transcription Factor Domain
- TF Family
- Fork_head
- Domain
- Fork_head domain
- PFAM
- PF00250
- TF Group
- Helix-turn-helix
- Description
- The fork head domain is a conserved DNA-binding domain (also known as a winged helix) of about 100 amino-acid residues. Drosophila melanogaster fork head protein is a transcription factor that promotes terminal rather than segmental development, contains neither homeodomains nor zinc-fingers characteristic of other transcription factors [1]. Instead, it contains a distinct type of DNA-binding region, containing around 100 amino acids, which has since been identified in a number of transcription factors (including D. melanogaster FD1-5, mammalian HNF-3, human HTLF, Saccharomyces cerevisiae HCM1, etc.). This is referred to as the fork head domain but is also known as a 'winged helix' [1, 2, 3]. The fork head domain binds B-DNA as a monomer [2], but shows no similarity to previously identified DNA-binding motifs. Although the domain is found in several different transcription factors, a common function is their involvement in early developmental decisions of cell fates during embryogenesis [3].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 1.8e-39 2.6e-36 124.4 0.0 1 88 95 181 95 181 0.97 2 2 2.7 4.1e+03 -1.2 0.3 34 49 256 271 251 272 0.80
Sequence Information
- Coding Sequence
- ATGATGAAGGAACAGCAGTTGACTGAGGTCAGTGGATCTGACCAGTTACCATCCGTAGTCCACACGCCTACCATCAACATCCAACAACATCTCCACCATCTCCATCTACACCAACACCAGCACAGCGTCATCCTATCAACAGACCAACAACAGAACcaacttcaacaacaacaacaacagcaactcGAAGTCCAACAACATGCCACCCCAGAAAGTACAGCACCTGACTCCCAGGATACGAAACCATCCAGCTCGGAGAAGAAATCAGGTATGCGAAGACAGGAGAAACCTCCGTACTCCTACATAGCCCTTATAGTCATGGCCATACAACATTCACCAACAAAACGCCTAACTTTAAGTGAAATATACACTTTCTTGCAACAAAGATTCCCATTCTTCAGAGGGTCTTATCAAGGGTGGAAAAACTCTGTGAGGCATAATTTATCATTAAACGAGTGCTTTATAAAGCTACCCAAAGGCTTAGGGCGTCCTGGAAAGGGACATTACTGGACCATAGACCCAGCTAGTGAATACATGTTCGAGGAAGGCTCTTTTAGGAGGAGACCACGTGGTTTCAGGAGAAAATGTCAGGCCATGAAGCCGCAGTACCATCCAACGTTTCTCTCGCATAACATGCCTTCAATGGTCAATCAAACAACTGGGTATGAACACCAGACTTTAGTGCAACCTCAGGAATATTCAACTTGTTCGTACAACACTCCGCCAACTCAAGTATCGTCGGTTAGTGGTTCGCATTATTCAGCTTATGAGTATCCGGTTTACCAGCAACAACCTGAAAGGGAATGGAGTTCAACGCCTGCTATCCTGCCTCCGTATCCGGACAATATCTCCACGACTTACCTGAAGGCTTCTCTGAGTCCCATACAGAATAATCAGGAGTGCATGACGCCACCTCCTCCGTCGGTTTCCGAGTCGTTCAGCTATACGTACGGATTGCCGTCTCCGTCGGCAGATAGCATAATGAGGACCGGCAACAGCATGCAATCTGTACAGTGCGATAGGAAACCATATCTCAGTTCGACGCCGCCTTCAATACCAACTTCTTTGCCGTCACCGCCCGCTGCCAACACAGCACAGTATTACGAGCATCATATCAACAATAAATATACATTGTAG
- Protein Sequence
- MMKEQQLTEVSGSDQLPSVVHTPTINIQQHLHHLHLHQHQHSVILSTDQQQNQLQQQQQQQLEVQQHATPESTAPDSQDTKPSSSEKKSGMRRQEKPPYSYIALIVMAIQHSPTKRLTLSEIYTFLQQRFPFFRGSYQGWKNSVRHNLSLNECFIKLPKGLGRPGKGHYWTIDPASEYMFEEGSFRRRPRGFRRKCQAMKPQYHPTFLSHNMPSMVNQTTGYEHQTLVQPQEYSTCSYNTPPTQVSSVSGSHYSAYEYPVYQQQPEREWSSTPAILPPYPDNISTTYLKASLSPIQNNQECMTPPPPSVSESFSYTYGLPSPSADSIMRTGNSMQSVQCDRKPYLSSTPPSIPTSLPSPPAANTAQYYEHHINNKYTL
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00137715; iTF_00980746; iTF_01097238; iTF_01098305; iTF_00307383; iTF_01498689; iTF_00956119; iTF_00433852; iTF_01123500; iTF_01120687; iTF_00625948; iTF_00064990; iTF_00626878; iTF_00740626; iTF_00987609; iTF_00464474; iTF_00465798; iTF_01257782;
- 90% Identity
- iTF_00980746;
- 80% Identity
- -