Agra007032.1
Basic Information
- Insect
- Aphodius granarius
- Gene Symbol
- retn
- Assembly
- GCA_963971325.1
- Location
- OZ020222.1:8336273-8347882[+]
Transcription Factor Domain
- TF Family
- ARID
- Domain
- ARID domain
- PFAM
- PF01388
- TF Group
- Helix-turn-helix
- Description
- This domain is know as ARID for AT-Rich Interaction Domain [2], and also known as the BRIGHT domain [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 1.2e-20 4.9e-17 62.9 0.0 16 89 55 126 50 126 0.94 2 2 5.6 2.3e+04 -3.3 0.0 47 61 249 261 238 275 0.64
Sequence Information
- Coding Sequence
- ATGGGCCTCCTTGGACCATCTGGCCCGACCACCCTTTCAATTCTCGCGCGCCAATTGAATAAACATGTCACATTGGCCTTCCACTACAACAAGCAGGAGGCATTGCCGGTCCCGCCTGGTAAGAACGTCGTCAATTTAACACCAAATTATCCGGACGCGGGACGATGTACGCCGATTAATCGTCTTCCCATCATGGCTAAACACGTTCTGGATCTATTCcaactgtacaatttggttGTCGAACGTGGAGGCTTAGTAGAAGTTATCAATAAGAAGCTATGGCAAGAAATCATCAAGGGTTTGAATCTACCTTCCTCTATAACGTCAGCTGCGTTTACTCTGCGGACGCAATACATGAAATATTTGTACAACTACGAAACGGAGAAAAAgaagtttagcacattctcAGAGCTCCAAGTGGCCATCGATGGCAATCGCCGTGAAGGCAGGCGGGCAACTTACTATGACCACAGAACCACATCATCGAATCCACCAACACCTCAACAACAGTTGACAAACGCCAGATTAAACCAGCTAGCAAATTCCGCAATGAGCCTTCACAATGGTCATGGTATCCAACCACCTCCAATGCCAAATCCCCAAATGAACGGTTCTGCTGTTCTACAAGCGGCCATTGGAAACGAATTGCAGCAGTCGATCAACATGATGGACTATATTAAGATGTTCCAGAACGTTTCCATGCCTACCAGTGTAGCCGCTGCCATGCCAACACCGGGCGGACTGAACGTTGCCGCCACCTTGTGGAATtccgtgtataataataatccgaATCAGCACCATCCGCCACCGGTACATCATCAGATACCTGAGCAAAGGGAGCCGATTAATTTGGCGAATCCGGATACGAATAATGATTCGTTCGAAGCGACGGCGAGTGCAGCGAGGAGGAAAAGGAGCAGGAGGTCGCCTTACGATAGGTCCGATAATAGCAATGATTCCGCGACTGCAGTTCGCAGGAGAAGGTCGCCCAGTACCAGCCCGCCACCAGCGCAAAGACCAGCGCCGTTCGCCACCAGCATAAGGATTGAAACGCGAGGTAAGTTCCACAGTAATTAG
- Protein Sequence
- MGLLGPSGPTTLSILARQLNKHVTLAFHYNKQEALPVPPGKNVVNLTPNYPDAGRCTPINRLPIMAKHVLDLFQLYNLVVERGGLVEVINKKLWQEIIKGLNLPSSITSAAFTLRTQYMKYLYNYETEKKKFSTFSELQVAIDGNRREGRRATYYDHRTTSSNPPTPQQQLTNARLNQLANSAMSLHNGHGIQPPPMPNPQMNGSAVLQAAIGNELQQSINMMDYIKMFQNVSMPTSVAAAMPTPGGLNVAATLWNSVYNNNPNQHHPPPVHHQIPEQREPINLANPDTNNDSFEATASAARRKRSRRSPYDRSDNSNDSATAVRRRRSPSTSPPPAQRPAPFATSIRIETRGKFHSN
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00137687;
- 90% Identity
- iTF_00137687;
- 80% Identity
- -