Agra003801.1
Basic Information
- Insect
- Aphodius granarius
- Gene Symbol
- -
- Assembly
- GCA_963971325.1
- Location
- OZ020221.1:17783115-17788919[+]
Transcription Factor Domain
- TF Family
- CSD
- Domain
- CSD domain
- PFAM
- PF00313
- TF Group
- Beta-Scaffold Factors
- Description
- In molecular biology, the cold-shock domain (CSD) is a protein domain of about 70 amino acids which has been found in prokaryotic and eukaryotic DNA-binding proteins. When Escherichia coli is exposed to a temperature drop from 37 to 10 degrees Celsius, a 4–5 hour lag phase occurs, after which growth is resumed at a reduced rate.During the lag phase, the expression of around 13 proteins, which contain cold shock domains is increased 2–10 fold. These so-called 'cold shock' proteins are thought to help the cell to survive in temperatures lower than optimum growth temperature, by contrast with heat shock proteins, which help the cell to survive in temperatures greater than the optimum, possibly by condensation of the chromosome and organisation of the prokaryotic nucleoid.
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 27 0.012 1.9e+02 3.0 0.1 10 47 5 46 2 49 0.77 2 27 0.013 2.1e+02 2.9 0.2 13 44 49 83 44 87 0.80 3 27 0.0032 52 4.9 0.3 10 46 66 105 60 109 0.80 4 27 0.0029 47 5.0 0.2 10 44 86 123 80 127 0.81 5 27 0.0032 52 4.9 0.4 10 46 106 145 100 149 0.81 6 27 0.0033 54 4.8 0.2 10 44 126 163 120 167 0.81 7 27 0.003 48 4.9 0.3 10 46 166 205 161 209 0.80 8 27 0.0075 1.2e+02 3.6 0.2 10 44 206 243 202 247 0.80 9 27 0.0033 54 4.8 0.3 10 44 226 263 218 267 0.81 10 27 0.0031 50 4.9 0.4 10 46 246 285 240 289 0.81 11 27 0.007 1.1e+02 3.7 0.1 10 42 266 299 262 306 0.84 12 27 0.0029 47 5.0 0.2 10 46 306 345 300 349 0.81 13 27 0.0075 1.2e+02 3.6 0.3 10 46 326 365 323 369 0.80 14 27 0.033 5.4e+02 1.6 0.1 10 41 346 377 340 387 0.82 15 27 0.014 2.3e+02 2.8 0.2 10 44 366 403 361 407 0.79 16 27 0.0033 54 4.8 0.2 10 44 386 423 380 427 0.81 17 27 0.0035 56 4.7 0.3 10 44 406 443 400 447 0.81 18 27 0.0034 55 4.8 0.2 10 46 426 463 422 468 0.85 19 27 0.0052 85 4.2 0.2 10 44 446 483 443 486 0.80 20 27 0.0028 45 5.0 0.2 9 44 465 503 459 507 0.80 21 27 0.0048 78 4.3 0.1 10 44 506 543 502 546 0.80 22 27 0.00087 14 6.6 0.3 10 49 546 588 542 589 0.84 23 27 0.0025 41 5.2 0.1 9 42 585 619 582 627 0.84 24 27 0.0039 63 4.6 0.2 11 44 627 663 620 667 0.80 25 27 0.0014 23 6.0 0.2 10 46 666 705 662 709 0.81 26 27 0.0029 47 5.0 0.3 10 46 706 745 699 749 0.81 27 27 0.0028 46 5.0 0.2 10 44 726 763 720 771 0.81
Sequence Information
- Coding Sequence
- atggttaacgttaaggtgaatatctacgtcacaccgtcgacccgcaacaacgcaagtccgacggttaacgttaaggtgaatatctacgtcacaccgtcgtcgatccgcaacaacgcaaatccgacggttaacgttaaggtgattatctacgtcacaccgtcgacccgcaacaacgcaaatccgacggttaacgttaaggtgaatatctacgtcacaccgtcgacccgcaacaacgcaaatccgacggttaacgttaaggtgaacatctacgtcacaccgtcgtcccgcaacaacgcaaatccgacggttaacgttaaggtgaatatctacgtcacaccatcgacccgcaacaacgcaaatccgacggttaacgttaaggtgaatatctacgtcacaccgtcgacccgcaacaacgcaaatccgacggttaacgttaaggtgaatatctacgtcacaccgtctactcgcaacaacgcaaatccgacagttaacgttaaggtgaatatctacgtcacaccgtcgacccgcaacaacgcaaatccgacggttaacgttaaggtgaatatctacgtcacaccgtcgacccgcaacaacgcaaatccgacagttaacgttaaggtgaatatctacgtcacagcgtcgactcgcaacaacgcaaatccgacagttaacgttaaggtgaatatctacgtcacaccgtcgacccgcaacaacgcaaatccgacggttaacgttaaggtgaatatctacgtcacaccgtcgacccgcaacaacgcaaatccgacggttaacgttaaggtgaatatctacgtcacaccgtcgacccgcaacaacgcaaatccgacggttaacgttaaggtgaatatctacgtcacaccgtcgactcgcaacaacgcaaatttgagggttaacgttaaggtcaatatctacgtcacaccgtcgacccgcaacaacgcaaatccgacggttaacgttaaggtgaatatctacgtcacaccgtcgacccgcaacaacgcaaatccgactgttaacgttaaggtgaatatctacgtcacaccgttgacccgcaacaacgcaaatccgacggttaacgttaaggtcaatatctacgtcacaccgtcgacccgcaacaacgcaaatctgacggttaacgttaaggtgaatatctacgtcacaccgtcgacccgcaacaacgcaaatccgacggttaacgttaaggtgaatatctacgtcacaccgtcgacccgcaacaacgcaaatccgacggttaacgttaaggtgaatatctacgtcacaccgtcgacccgcaacaacgcaaatccgacggttaacgttaaggtgaatatctacgtcacaccgtcgacccgcaacaacgcaaattcgagggttaacgttaaggtgaatatctacgtcacaccgtcgacccgcaacaacgcaaatccgacggttaacgttaaggtgaatatctacgtcacaccgtcgacccgcaacaacgcaaatccgacggttaacgttaaggtgaatatctacgtcacaccgtcgacccgcaacaatgcaaattcgagggttaacgttaaggtgaatatctacgtcacaccgtcgacccgcaacaacgcaaatccgacggttaacgttaaggtgaatatctacgtcacaccgtcgacccgcaacaacgcaaatccgacggttaacgttaaggtgaatatctacgtcacaccgtcgacccgcaacaacgcaaatccgacggttaacgttaaggagaatatctacgtcacaccgtcgacccgcaacaacgcaaattcgacggttaacgttaaggtgaatatctacgtcacaccgtcgacccgcaacaacgcaaatccgacggttaacgctaaggtgaatatctacgtcacaccgtcgacccgcaacaacgcaaatccgacggttaacgttaaggtgaatatctacgtcacaccgtcgacccgcaacaacgcaaatccgacggttaacgttaaggtcaatatctacgtcacaccgtcgacccgcaacaacgcaaatccgacggttaacgttaaggtgaatatctacgccacaccgtcgacccgcaacaacgcaaatccgacggttaacgttaaggtgaatatctacgtcacaccgtcgacccgcaacaacgcaaatccgacggttaacgttaaggtgaatatctacgtcacaccgtcgacccgcaacaacgcaaatccgacggttaacgttaaggtgaatatctacgtcacaccgtcgacccgcaacaacgcaaatccgacggttaacgttaaggtcaggaatcttctgttttataacagcaaaaatcagatgcaataa
- Protein Sequence
- MVNVKVNIYVTPSTRNNASPTVNVKVNIYVTPSSIRNNANPTVNVKVIIYVTPSTRNNANPTVNVKVNIYVTPSTRNNANPTVNVKVNIYVTPSSRNNANPTVNVKVNIYVTPSTRNNANPTVNVKVNIYVTPSTRNNANPTVNVKVNIYVTPSTRNNANPTVNVKVNIYVTPSTRNNANPTVNVKVNIYVTPSTRNNANPTVNVKVNIYVTASTRNNANPTVNVKVNIYVTPSTRNNANPTVNVKVNIYVTPSTRNNANPTVNVKVNIYVTPSTRNNANPTVNVKVNIYVTPSTRNNANLRVNVKVNIYVTPSTRNNANPTVNVKVNIYVTPSTRNNANPTVNVKVNIYVTPLTRNNANPTVNVKVNIYVTPSTRNNANLTVNVKVNIYVTPSTRNNANPTVNVKVNIYVTPSTRNNANPTVNVKVNIYVTPSTRNNANPTVNVKVNIYVTPSTRNNANSRVNVKVNIYVTPSTRNNANPTVNVKVNIYVTPSTRNNANPTVNVKVNIYVTPSTRNNANSRVNVKVNIYVTPSTRNNANPTVNVKVNIYVTPSTRNNANPTVNVKVNIYVTPSTRNNANPTVNVKENIYVTPSTRNNANSTVNVKVNIYVTPSTRNNANPTVNAKVNIYVTPSTRNNANPTVNVKVNIYVTPSTRNNANPTVNVKVNIYVTPSTRNNANPTVNVKVNIYATPSTRNNANPTVNVKVNIYVTPSTRNNANPTVNVKVNIYVTPSTRNNANPTVNVKVNIYVTPSTRNNANPTVNVKVRNLLFYNSKNQMQ
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -