Basic Information

Insect: Aphodius granarius
Gene Symbol: rfx7.L
Assembly: GCA_963971325.1
Location: OZ020222.1:11405512-11415445[+]

Transcription Factor Domain

TF Family: RFX
Domain: RFX domain
PFAM: PF02257
TF Group: Basic Domians group
Description: RFX is a regulatory factor which binds to the X box of MHC class II genes and is essential for their expression. The DNA-binding domain of RFX is the central domain of the protein and binds ssDNA as either a monomer or homodimer [1]. It recognize X-boxes (DNA of the sequence 5'-GTNRCC(0-3N)RGYAAC-3', where N is any nucleotide, R is a purine and Y is a pyrimidine) using a highly conserved 76-residue DNA-binding domain (DBD) [2].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 2 3.6e-33 4e-29 101.9 0.1 4 78 213 287 210 288 0.97

2 2 1.7 1.8e+04 -2.8 0.0 16 40 751 775 747 787 0.67

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	2	3.6e-33	4e-29	101.9	0.1	4	78	213	287	210	288	0.97
2	2	1.7	1.8e+04	-2.8	0.0	16	40	751	775	747	787	0.67

Sequence Information

Coding Sequence: ATGTTAGTAGCGGGTAAGATAGCGCCAGGACGTCCGGCGCAGGATAGCTCCAGGAGAATCCGGAGCGAGGAGGTACGGGTACCGGAATACCGGACCAAAACGACTTCAGGAATTCCGAAGCCAGGGAGGGAACGCCGGAATACCGCAGTCCCAGAAGAAGGTAGCGCCACATATGTGGGAGAAGTGGTACCACAGCCTTGGTGGCATTTGCTACAAGTTCGGGGTCGACCGAGTCGATTCGATTGTGTGATTGTGGAACAGCAGAGGACAGAACTAGACCAGCTGATTGGAATTGACAGAATAAAAAATGTCCCGGTCTTGTCTGCCCGTAGCGTTGGTGGTATGGCAGTGCAGGCGAGAGATGGACGAACAGCCATAGATGGGATGGGAGATGCAGTGTTAAACAATGGCAGCTGTGACAGTCTGCACCAGGAGGGAGACAGTCAACTACACGATATAGAAGAAGCTATCAGTGAGTGTAGTAAAGCTAAAATCAACAACATCCTCAAAGAAGTTGACACACTATTGCCACTAGAGAAGCTACTTTTATATTTCAAATTGCCCACCGACAATACTTTGGTCGACCCATTGAAACAACCAACTAATCCGCTCGGCAGCAGATCGGAAATTTACCTTACCATACAATGGATTAAAACGCATTTGGAGGAAGATCCCGGCATATCTCTGCAGAAGAAAAATGTTTACGATGAATACATCTCATTCTGCACAGAGAACAAGATCAAGCCACTTTCAACAGCGGATTTTGGTAAGGTTATGAAACAGGTGTACCCGAAAGTAAGGCCAAGAAGATTAGGTACAAGAGGACATTCGCAATACTGCTATTCAGGGCTGCGGACGCGGATAAAGCTGCAAACCCCAACGCTGCCAGACTTATCTCAAAAACCACAATCATCTGAGTTTACTATAGGAACCGATTGCGACTTGTCCAACGCAGCCTGGACCATAATAAAACAATGGTCGGAGGTAAATCTCGGGGCCAAGTTTGGTACATTTTTGGATTTGGCCCGGTACCTCGTGAAGTCGTTGTCAATTGGTGTTGGGACTAATGCTGCTTCTGTGATCATTTCTGTTCCATCGTGCGAACAGAATGGTGATTTAACGAATGCTGTGAATAGTAACAGACATAAGGAAACAATTCgaaaaattcaattaaaatgcGAGGGCAAGGAGCAGAAACGAAAATTGCAGGCGCAACAATCCAAGTTGGAGCAGAAGCCACGCCCGAAGAAATCGAAAATAAACCAATCAGCGCCCCCCTCTGTGTCTAGCAGCCGCGGGCCGTCGCCGATTCTCTCACCTGGCGTGGTCTTCGACAGTAAGCAGCAGAGCCCGGTCCAGGGTCCGATTCCAGTCTGTGATAAAGCCCTAGATTTCCGCAGCAACGGGGTGACGGCTCAGCCAGTGCCGGAAGCGGGGGCCGCTGTCGCCGGTCTTACTTTTCCGGACGGCGGCAACGTCCCCCCGCTAGGCAAGGTGCCCATCCCCAGGCTGGCACCGCTTCCCAAGCAACTCCAGTCGCCCCCGCCCGCCAAGAACATGAAGTACAAACACATCCAGCCGAAATGTGATACCGCCACGTACAACCAGCAACTCAGATCTCAAGAAACAATCGTAGGTAAGTCTAGAAGGTTAAGGAAGAAGGAGGAAACGGTAACGCCGAGCCTATTGGCCGACGATACAAACGAGTTACTCTCGAGGAAGCGTCTGATAAGTGTTGCCAACTTAGATAAAGACGCCCTCGATGAGTATTTGGGGCAGAACAACAGCCAAGAAAATGAAGAGGAGATCACGAAAATCTACGAGAGCTCCATTCAGAAGGACGACAACTCGGCCAAACTATCGCAGCTGCGCTCACTGCTGGAACAGACGACGCAGCACCCGGTGCAGGATAACAACGCAAACATCAAAGGAAACGCAACGTTCCTGAAGGAGTCGGATAATCAGGTTATTCTTCCTAGTTTTCAGACAAATCTAAGCGCCAGACGTCGCGTAAGTTTTGATCCACCGTTTGCCGAAGAGGTACCGCAAAGTCCCACGACAAAATACGCGTTTATGCCGATTTCTCCCGGTTCGAAGTGTTCGAGTTCAACACCGAGCCCATTTGTAAGTCCGAGGAATACCCCTTTGCCGAGAGCAAGGGGTAATTCCCACCCTTATTTCCCGCTGTTAAACAAAAAGTCGAAGAAAAATATCGAATTGGCGAACTTGCCGATGTCCGCTCCTCCGAGTCCAAAGGTCACCGTGCCTAACGCTCAAATGTTCCATTACAACACCCAGTACAAAAATAATAACGTAGTACAACCGGATCAATTTGCCGCAGAGTTAAGTAACTTGATCGCGAATATTCAGCAACCGAACGCAATTGAAACACAACAGCACACTCTGATGCGTTCCCAGTCCGTTCCTGTGCAGAATTTCCTCACGTTTCAAGATTTCGGGAATGATTTTAACCTCCCGTTGACGGAGACTTACAACATATCAAATTTCGAACCGGAAGAGAACTTAAATAATCCATCCCGGTCGGTTCCCAGCACTCCGATACCAAATTGCGATCGGAAGCAGATTAAACAAGAAGTCCCGAGTTATTCTTCACGGTCTTACCCATCGACACCGTTAACCGATGATACTTTTAATTACAGCACCGGTTTAACTCAGGATTTCTTGTTAAACGGCCAACCAATCAAAGATAAACTCGACCCGGAGCTTGAGTTGAATTTAATCGATATGGAACCGAAACCGGATATGGATATATTTGGGGACACGACTTCGAAGGATAATTTCGATTTCGGACAGTATGACGGCAGTTTTAACGTTAAGCAGACGGAAAGTCTCCCACCGGAGTTTGAGGGCATTccgaattattttaaaaatccgTAG
Protein Sequence: MLVAGKIAPGRPAQDSSRRIRSEEVRVPEYRTKTTSGIPKPGRERRNTAVPEEGSATYVGEVVPQPWWHLLQVRGRPSRFDCVIVEQQRTELDQLIGIDRIKNVPVLSARSVGGMAVQARDGRTAIDGMGDAVLNNGSCDSLHQEGDSQLHDIEEAISECSKAKINNILKEVDTLLPLEKLLLYFKLPTDNTLVDPLKQPTNPLGSRSEIYLTIQWIKTHLEEDPGISLQKKNVYDEYISFCTENKIKPLSTADFGKVMKQVYPKVRPRRLGTRGHSQYCYSGLRTRIKLQTPTLPDLSQKPQSSEFTIGTDCDLSNAAWTIIKQWSEVNLGAKFGTFLDLARYLVKSLSIGVGTNAASVIISVPSCEQNGDLTNAVNSNRHKETIRKIQLKCEGKEQKRKLQAQQSKLEQKPRPKKSKINQSAPPSVSSSRGPSPILSPGVVFDSKQQSPVQGPIPVCDKALDFRSNGVTAQPVPEAGAAVAGLTFPDGGNVPPLGKVPIPRLAPLPKQLQSPPPAKNMKYKHIQPKCDTATYNQQLRSQETIVGKSRRLRKKEETVTPSLLADDTNELLSRKRLISVANLDKDALDEYLGQNNSQENEEEITKIYESSIQKDDNSAKLSQLRSLLEQTTQHPVQDNNANIKGNATFLKESDNQVILPSFQTNLSARRRVSFDPPFAEEVPQSPTTKYAFMPISPGSKCSSSTPSPFVSPRNTPLPRARGNSHPYFPLLNKKSKKNIELANLPMSAPPSPKVTVPNAQMFHYNTQYKNNNVVQPDQFAAELSNLIANIQQPNAIETQQHTLMRSQSVPVQNFLTFQDFGNDFNLPLTETYNISNFEPEENLNNPSRSVPSTPIPNCDRKQIKQEVPSYSSRSYPSTPLTDDTFNYSTGLTQDFLLNGQPIKDKLDPELELNLIDMEPKPDMDIFGDTTSKDNFDFGQYDGSFNVKQTESLPPEFEGIPNYFKNP

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00980670;
90% Identity: -
80% Identity: -