Agos002257.1
Basic Information
- Insect
- Aphis gossypii
- Gene Symbol
- -
- Assembly
- GCA_004010815.1
- Location
- NW:275770-280331[+]
Transcription Factor Domain
- TF Family
- zf-GAGA
- Domain
- zf-GAGA domain
- PFAM
- PF09237
- TF Group
- Zinc-Coordinating Group
- Description
- Members of this family bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 8 0.37 2.3e+03 -1.7 0.1 22 43 190 211 185 216 0.66 2 8 0.028 1.8e+02 1.9 0.0 26 44 250 268 237 272 0.85 3 8 0.00053 3.3 7.4 0.0 21 44 273 296 268 301 0.89 4 8 0.00086 5.4 6.7 0.0 21 45 301 325 297 331 0.90 5 8 0.00076 4.8 6.9 0.0 22 46 330 354 325 360 0.86 6 8 0.022 1.4e+02 2.2 0.1 21 44 357 380 354 389 0.87 7 8 0.011 68 3.2 0.0 26 46 390 410 385 416 0.84 8 8 0.0049 30 4.3 0.1 21 47 413 439 408 445 0.84
Sequence Information
- Coding Sequence
- ATGAAACCTTCAAGAACAACCATTAGTGATTCAGGGATAAATTCCAAaactgATGATGAATTATTGAATAGAGTTATAAAACAGGAAATCATTGATGAAAAAGACGaccaaaataatgattataaatctatacaaATTGGAACTGATGATCAAATGTTGAATAGAGTCATAAAACAGGAAATCATTGATGAAACAGATGACTACAATAatgattatcaattattacaaattggaacaAAGGGTAAAAATGAAGaagtaaaaacaattgataacaagataaaaatcgaaattgaTGTTATAGAGGGTTATGAATTTGAAGGAGCAATATTCCCCGAGAACCAATCTTCGGAATTCATTTCTTTAATGAATTCTGATAATGGACCTAACATTAGAGAAACACATATAACATGTAATGTGTGTAAAGTATCTTCAAATACATGTCAATTTCAAGAAGTCCATATGCATTCTCATACTGGAGATAATCTTCACAAATGCAAAATTTGTGgtcatttttttaactcaaaaatacttttgaataaACATGCAATGATACATACCAGTAAAAGAATAAGGCCATTCATTTGTGacatttgtaataaatcatattctaCTAAATCACGTTTAAAAATTCACATACTGCTTCATAATGaagataatcattataaatgtaatacttgtaataaaaaatttactcaaaaaaatcattttaaaacccATACCAAGACACATACTAAAAAAACTTCACATAAATGTGAAATCTGTGATTCAGTGTTTTTTCAAGCAAGtcacttaaaaattcatacaAGAGTACATACTGGTGAAAAGCCATATAAGTGTGAAATCTGCGATTCTGTGTTTTCTCAAGcaactcaattaaaaattcatacaaGAGTACATACTGGAGAAAAGCCATATAAATGTGGTACATGTGGTCGAGTGTTTTCTGTagcacaaaatttaaaaagacatACAAGAGTACATACTGGTGAAAAGCAATATAAATGTGATATATGTGATCAAGTGTTTTCTCaactttctaatttaaaaacacatattaagATACATACTGGAGAAAACCCTTATAAGTGTAGTATTTGTAATAAAGAATTTTCCCAAAaaccttatttaaaaaaacatacaaagacacatattaaaataaaatcacataaaTGTGAAATCTGTGGTTCATTGTTTTCTCAATCAAGTCACTTAAAAAGTCATACAAGAGTACATACTGGTGAAAAACCGTATAAATGTGAAATCTGTGATCGAGTATTTTCTAAagcacatattttaaaaagtcataCAAAAGTACATACTGGTGAAAAGCcatataaatgtgaaaaatgtGATTAA
- Protein Sequence
- MKPSRTTISDSGINSKTDDELLNRVIKQEIIDEKDDQNNDYKSIQIGTDDQMLNRVIKQEIIDETDDYNNDYQLLQIGTKGKNEEVKTIDNKIKIEIDVIEGYEFEGAIFPENQSSEFISLMNSDNGPNIRETHITCNVCKVSSNTCQFQEVHMHSHTGDNLHKCKICGHFFNSKILLNKHAMIHTSKRIRPFICDICNKSYSTKSRLKIHILLHNEDNHYKCNTCNKKFTQKNHFKTHTKTHTKKTSHKCEICDSVFFQASHLKIHTRVHTGEKPYKCEICDSVFSQATQLKIHTRVHTGEKPYKCGTCGRVFSVAQNLKRHTRVHTGEKQYKCDICDQVFSQLSNLKTHIKIHTGENPYKCSICNKEFSQKPYLKKHTKTHIKIKSHKCEICGSLFSQSSHLKSHTRVHTGEKPYKCEICDRVFSKAHILKSHTKVHTGEKPYKCEKCD
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00136314;
- 90% Identity
- iTF_00136314;
- 80% Identity
- iTF_00136314;