Agos005742.1
Basic Information
- Insect
- Aphis gossypii
- Gene Symbol
- bab2
- Assembly
- GCA_004010815.1
- Location
- NW:5157728-5164560[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 4 1e-11 9.1e-09 34.4 0.0 2 38 428 465 427 470 0.89 2 4 8.8e-12 7.8e-09 34.6 0.1 2 39 482 519 481 522 0.94 3 4 1.5e-16 1.3e-13 49.9 0.0 3 45 538 581 536 581 0.97 4 4 4.3e-17 3.9e-14 51.6 0.1 1 43 588 631 588 633 0.96
Sequence Information
- Coding Sequence
- ATGACAGTTAATGGCCAGCACTACTGTCTGCGATGGAATAATTACCAATCAAACATGACTTCTGTGTTTCATCAGCTTCTTCGAAATGAATCGTTTGTTGATGTTACTCTTGCTTGTAATGAGAGCACGCTTAAAGCacacaaaGTGGTATTATCAGCTTGTTCATCATACttccaaaaattattgatgGATAACCCATGTAAACATCCAACCATTATATTGCCTTACGATGTTTGTTTTAACGATCTTAAGTTCATCATAGAGTTTGTGTATAGGGGCGAGATTGATGTGTCTCAAGCTGAATTACAAtCTCTTCTAAAGACTGCAGATCAGTTAAAGATTAAAGGACTATGTGAAGTACCTGAAGATGAACGTGATACATCTATTGTTGCTGAAGTAACTCCTTTGGGGCCATTAAAAAGTGGTGGAAGAGTGTTCACAAAATTACAAAGGAGAACTTCTccctattcaaaaaaattgagtcCTAATCAGATTCAGCAGGATCAGTTTAATCGAAGTTATTATCGAATTGAACAATCAGGTTTTGCCCCTATTAGTGTTGATCAAGAAAACAAatctataaatACTATCCATTGCATGACTGTAGCAACATCAACTGAAGATGATGAAAAAGAATTGAAGTCAACACTAACAGATTTACCGGTGGTCATACTAGAACCACATCcttcattaaatttacaagCCCAACAACAGTCCCAGATAGTTCACATACCAATACCACCatcacaacaacaacaacaacagcaatTAAGTCATGCAACACAACATACAAATCAACCACAGTTGCAACAAGCTGCAGTTCAAACTCATTCACAaATGATTATCACCACAGGTCCAGTTATGACAGTGAATGAAGCTGACATTTCACCTGATATACAGCCTGTTGGACCAAGGGCAACACCAGTACCAGTAAAAAATAGCACAAGTCCTTCATCAACACCTACACATAGAGATATGGCTGttggtACATCATGTTCAAATGATATGATGAGAAGTGATGGAAGTGAGAGAAAATTTGAAAGTACTAAATTTGAAACACTTCGTACAATTGATCAGTCATCAGATGCAATTGGAATAGAAAGACAACATTCTAATGACCgtAATATAAATGATGAAGATAATTCAATGCATACAATGATGATAACACCCGAACTTTTGGGATTATTACCAAATTCTTCTAATACAGGAGaTGTTAGTGAAGATAGttctagtaataatattaacaaacagTATGGTACAAATGGGGGAAAAGGATGGACAGCTGATGATATGGAAAATGCTTTAGAAGCATTACGTTCACATAATATGTCTTTAACTAAAGCATCCATAACATTTGGAATTCCTTCTACAACGTTATGGCAGCGGGCTCATCGAGCTGGAATAGATACTCCTAAAAAAGACGGACCTGCTAAATCTTGGAACGATGAAGCTTTAAACATTGCATTAGACGCTCTACGTACTGGCACTATTTCAGCAAATAAAGCTAGTAAAGCGTATGGTATACCTAGTAGTACATTATATAAGATTGCACGGCGGGAAGGAATTAGATTAGCTGCTCCATTCAATGCGGCACCTACTTCTTGGGGTCAGGAACAGTTAGACCAGGCATTACATGCCATACGAACAGGGCAAACGACTGTACAACGAGCTGCAGCTGACTATGGTATACCTTCTGGTACACTATATGGTCGGTGTAAACGTGAGAAAATTGAATTATCCCGCAGCAATCCAACCCCATGGTCTGAGGATGCTATGATGGAAGCTCTGGAGTCTGTACGATTAGGTCATATGAGTATTAATCAGGCAGCTATACATTACAATCTACCATATTCTTCATTATATGGACGTTTCAAAAGGGTGAAATATGGAGCTGGGCATCCAGATGATGATTGTGATGATATGATTGATTCAGATACACAAAGTGAACAACAGCACattcaacaacaacaacagcagcagGCAAATCAGCAAGTACAAGCTACTCCAGTGTCTCAAATAATGTTAGTTCAATACCCAGCACCACAGATTCAAATGTACCAACAACATCCAACTCATTCAACGACTAGTTGA
- Protein Sequence
- MTVNGQHYCLRWNNYQSNMTSVFHQLLRNESFVDVTLACNESTLKAHKVVLSACSSYFQKLLMDNPCKHPTIILPYDVCFNDLKFIIEFVYRGEIDVSQAELQSLLKTADQLKIKGLCEVPEDERDTSIVAEVTPLGPLKSGGRVFTKLQRRTSPYSKKLSPNQIQQDQFNRSYYRIEQSGFAPISVDQENKSINTIHCMTVATSTEDDEKELKSTLTDLPVVILEPHPSLNLQAQQQSQIVHIPIPPSQQQQQQQLSHATQHTNQPQLQQAAVQTHSQMIITTGPVMTVNEADISPDIQPVGPRATPVPVKNSTSPSSTPTHRDMAVGTSCSNDMMRSDGSERKFESTKFETLRTIDQSSDAIGIERQHSNDRNINDEDNSMHTMMITPELLGLLPNSSNTGDVSEDSSSNNINKQYGTNGGKGWTADDMENALEALRSHNMSLTKASITFGIPSTTLWQRAHRAGIDTPKKDGPAKSWNDEALNIALDALRTGTISANKASKAYGIPSSTLYKIARREGIRLAAPFNAAPTSWGQEQLDQALHAIRTGQTTVQRAAADYGIPSGTLYGRCKREKIELSRSNPTPWSEDAMMEALESVRLGHMSINQAAIHYNLPYSSLYGRFKRVKYGAGHPDDDCDDMIDSDTQSEQQHIQQQQQQQANQQVQATPVSQIMLVQYPAPQIQMYQQHPTHSTTS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00184731;
- 90% Identity
- iTF_01330472;
- 80% Identity
- iTF_00136263;