Basic Information

Insect: Aphis gossypii
Gene Symbol: foxf1-b
Assembly: GCA_004010815.1
Location: NW:576415-586771[+]

Transcription Factor Domain

TF Family: Fork_head
Domain: Fork_head domain
PFAM: PF00250
TF Group: Helix-turn-helix
Description: The fork head domain is a conserved DNA-binding domain (also known as a winged helix) of about 100 amino-acid residues. Drosophila melanogaster fork head protein is a transcription factor that promotes terminal rather than segmental development, contains neither homeodomains nor zinc-fingers characteristic of other transcription factors [1]. Instead, it contains a distinct type of DNA-binding region, containing around 100 amino acids, which has since been identified in a number of transcription factors (including D. melanogaster FD1-5, mammalian HNF-3, human HTLF, Saccharomyces cerevisiae HCM1, etc.). This is referred to as the fork head domain but is also known as a 'winged helix' [1, 2, 3]. The fork head domain binds B-DNA as a monomer [2], but shows no similarity to previously identified DNA-binding motifs. Although the domain is found in several different transcription factors, a common function is their involvement in early developmental decisions of cell fates during embryogenesis [3].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 1 6.5e-39 6.2e-36 121.9 0.0 1 87 65 150 65 151 0.97

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	1	6.5e-39	6.2e-36	121.9	0.0	1	87	65	150	65	151	0.97

Sequence Information

Coding Sequence: ATGGACATGTTGATCGTTAAGGCAGAGGACGAAAACGACGAGAGGAAAGCTCTCTGCAACggcaataacaacaacaacaacaacaacaacaacaataacaatatcaataaCAATTGTAAGAAGAACAACGGCGTCGGAACGACAGCGAAAACGGTGGCAGCGACGACCGGTGGTGTCGGGACCGGCAGGTCCGAAAAACCACCTTACTCGTACATAGCCCTAATCGTCATGGCGATCCAGAGTTCGCCGGTGAAAAGGCTCACGTTGAGCGAAATATACTCTTTCCTCCAGCACAGATTTCCTTTCTTCAGAGGTTCCTATCAGGGATGGAAAAACTCAGTGCGGCATAACCTGTCACTGAACGAATGTTTCATTAAGCTGCCAAAAGGGCTGGGGCGTCCGGGAAAAGGTCATTACTGGACAGTGGATCCAGCATCAGAGTTAATGTTTGAAGAGAGCTCATTCAGACGAAGACCCCGGGGATTCCGTCGCAAGTGTCAACAGAAGACTGTTGGGCCTATCAGTGGAGTCGTTAGTGGTTATCAAACGTCACAGTACCATCAGCACCTTCATCACCATCATCATCACCAGAACTTACAGCTgcaacaacagcaacagcatCACCATCATCCGACCGTCCAACAGCAGCAAACGCAGTCGTTACCTCAGACTCAGTCGTCACCGATTCTGCCACCTCCACAGCAACCACAGCCTCCACAGCATCAGCAACAGCAACCAATTGCCACTCAATCGCATCCGCAACAACCGCAACCACAGTCACAATCGGCGGCTTGTTACCTGCACGACCAATACGATTACAAGGACGCAACGGCTGCAGTGGTCGCGGGATACCaccagcagcagcaacagcaacaggACTACAGTAGTGGTACAGGTGGAGGAATTGGCATTAGCAACAGTGGAGGGTACTGCAGCAGGAACGACCAGTTGGACCATTTTGCGGCAAATTTTTGGCAAAGTCAAAAGTCTGACGGTTATGTCGGCGGCACGGGTGGCTACCAAGAACAGTTTGATTACGGTTGCCAGTATAACTTGACTCACGACAATGGTTATAGCACGGTTGCGAGAAGATCGGCGACTGCGGCCGGACAAACACAACAAACCGTCATGGACAACGCTATGAACGCCAGTAGCGGATTACCACAACACATAAGTCTCCACCATTATTATGACTGTCCAAAGTTTTGTTAA
Protein Sequence: MDMLIVKAEDENDERKALCNGNNNNNNNNNNNNNINNNCKKNNGVGTTAKTVAATTGGVGTGRSEKPPYSYIALIVMAIQSSPVKRLTLSEIYSFLQHRFPFFRGSYQGWKNSVRHNLSLNECFIKLPKGLGRPGKGHYWTVDPASELMFEESSFRRRPRGFRRKCQQKTVGPISGVVSGYQTSQYHQHLHHHHHHQNLQLQQQQQHHHHPTVQQQQTQSLPQTQSSPILPPPQQPQPPQHQQQQPIATQSHPQQPQPQSQSAACYLHDQYDYKDATAAVVAGYHQQQQQQQDYSSGTGGGIGISNSGGYCSRNDQLDHFAANFWQSQKSDGYVGGTGGYQEQFDYGCQYNLTHDNGYSTVARRSATAAGQTQQTVMDNAMNASSGLPQHISLHHYYDCPKFC

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00135127; iTF_00134052; iTF_01031764; iTF_01032693; iTF_01167414; iTF_00463167; iTF_01303996; iTF_01305355; iTF_00972862; iTF_01328429; iTF_00940185; iTF_00018828; iTF_01304668;
90% Identity: iTF_00134052;
80% Identity: -