Basic Information

Insect: Aphis glycines
Gene Symbol: -
Assembly: GCA_009928515.1
Location: scaffold:180689-185804[+]

Transcription Factor Domain

TF Family: zf-GAGA
Domain: zf-GAGA domain
PFAM: PF09237
TF Group: Zinc-Coordinating Group
Description: Members of this family bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 13 1.5 5.7e+03 -2.3 0.0 22 36 189 203 185 214 0.65

2 13 0.054 2.1e+02 2.2 0.0 26 44 249 267 240 271 0.88

3 13 0.00091 3.5 7.9 0.1 21 47 272 298 268 303 0.86

4 13 0.007 27 5.1 0.1 21 48 300 327 296 331 0.86

5 13 0.0011 4.1 7.7 0.1 21 47 328 354 324 360 0.85

6 13 0.1 4e+02 1.3 0.1 21 47 356 382 352 387 0.81

7 13 0.022 84 3.5 0.1 21 49 384 412 378 416 0.85

8 13 0.18 7.1e+02 0.6 0.1 20 44 411 435 404 441 0.84

9 13 0.043 1.7e+02 2.6 0.0 21 44 466 489 458 497 0.89

10 13 0.14 5.6e+02 0.9 0.0 26 45 499 518 490 521 0.88

11 13 0.0034 13 6.1 0.0 21 44 522 545 518 549 0.90

12 13 0.0012 4.8 7.5 0.2 21 46 550 575 545 581 0.85

13 13 0.0025 9.6 6.5 0.1 21 47 578 604 574 610 0.85

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	13	1.5	5.7e+03	-2.3	0.0	22	36	189	203	185	214	0.65
2	13	0.054	2.1e+02	2.2	0.0	26	44	249	267	240	271	0.88
3	13	0.00091	3.5	7.9	0.1	21	47	272	298	268	303	0.86
4	13	0.007	27	5.1	0.1	21	48	300	327	296	331	0.86
5	13	0.0011	4.1	7.7	0.1	21	47	328	354	324	360	0.85
6	13	0.1	4e+02	1.3	0.1	21	47	356	382	352	387	0.81
7	13	0.022	84	3.5	0.1	21	49	384	412	378	416	0.85
8	13	0.18	7.1e+02	0.6	0.1	20	44	411	435	404	441	0.84
9	13	0.043	1.7e+02	2.6	0.0	21	44	466	489	458	497	0.89
10	13	0.14	5.6e+02	0.9	0.0	26	45	499	518	490	521	0.88
11	13	0.0034	13	6.1	0.0	21	44	522	545	518	549	0.90
12	13	0.0012	4.8	7.5	0.2	21	46	550	575	545	581	0.85
13	13	0.0025	9.6	6.5	0.1	21	47	578	604	574	610	0.85

Sequence Information

Coding Sequence: ATGGAACCTTCAAGAACAACCATTAGTAATTCAGGGATAAATTCCAAAACTGATGATGAATTATTAAATAGAGTTATAAAACAGGAAATCATTGATGAAACAGACGACCAAAATAATGATTATATATCTTTACAAATTGGAACTGATGATCAAATGTTGAATAGAATCATAAAACAGGAAATCATTGATGAAACAAATGACTACAATAATGATTATCAATTATTACAAATTGGAACAAAGGGTGAAAATGAAGAAGTAAAAACAATTGATAACAAGATAAAAATCGAAAATGATGTTATCGAGGGTTATGAATTTGAAGGAACAATGTTCACCGAGAACCGATCTTCGGAATTCATTTCTTTAATGAATTCTGATAATGGACCTAACATTAGAGAAACACATATAACATGTAATGTGTGTAAAGTATCTTCAAATACATGTCAATTTCAAGGCCATATGCATTCTCATACTAGAGATAATCTTCACAAATGCAAAATTTGTGGTCATTTTTTTAACTCAAAAATACTTTTGAATAAACATGCAATGATACATACCAGTAAAAAAATTAGGCCATTCATTTGTGACATTTGTAATAAATCATATTCTACTAAATCACGTTTAAAAATTCACATACTGCTTCATAATGAAGATAATCATTATAAATGTAATACTTGTAATAAAAAATTTTCTCAAAAAAATCATTTTAAAAACCATATAAAGACACATACTAAAAAAACTTCACATAAATGTGATATATGTGATCAAGTGTTTTCTCTAGCACAAAATTTAAAAAATCATACAAGAGTACATACTGGTGAAAAGCCATATAAATGTAAAATCTGCGATTCAGTGTTTACTCAAGCAAGTCACTTAAAATGTCATACAAAAGTACATACTGGAGAAAAACCTCATAAATGTGAAATCTGTGATCGAGCGTTTTCTCTAGCACATAATTTAAAAACTCATATAAGAATACATACTGGTGAAAAGCCCTATAAATGTGAAATCTGCGATTCATTGTTTTCTCAATCAAGTCACTTAAAAAGTCATACAAGAGTACATACTGGTGAAAAGCCACATAAATGTGGTATATGTGATCAAGGGTTTTCTCGAGCAGATTGTTTAAAACATCATATAAGAGTACACACTGGTGAAAAGCCCTATAAATGTGAAGTCTGCGATTCATTGTTTTCTCAAGCAAGTCACTTAAAAATTCATACAAGAGTACATACTAGTGAAAAGCCATATAAATGTGATAACTGTGAACAAGCATTTTTTCAAAGAAATCACTTAAAAAATCATACAAGAGTACATTCTAGTAAATATAAATGTGAAAAATGTGATCAAGTGTTTTCTTATATTTCTAATTTAAAAACACATATTAAGACACATACTGGAGAAAACCCTTATAAGTGTAGTACTTGTAATAAAGAATTTTCCCAAAAACTTAATTTAAAAAAACATACAAAGACACATACTAAAATAAAATCACATAAATGTGAAATCTGCAATTCATTGTTTTCTCAAGCAAGTCATTTAAAAAGTCATACAAAAGTACATACTGGTGAAAAGCCATATAAATGTAATATCTGTGATCAAGTGTTTTCTCTAGCACATAATTTAAAAAGTCATACAAGAGTACATACTGGTGAAAAGCCATATAAATGTGAAATCTGCGATTCTGTGTTTTCTCAAGCAAGTCACTTAAAATGCCATACAAGAGTACATACTGGTGAAAAACCGTATAAATGTGAAATCTGTGATCGAGTATTTTCTGTAGCACATAATTTAAAAAGTCATACAAGAGTACATACTGGTGAAAAGCCATATAAATGA
Protein Sequence: MEPSRTTISNSGINSKTDDELLNRVIKQEIIDETDDQNNDYISLQIGTDDQMLNRIIKQEIIDETNDYNNDYQLLQIGTKGENEEVKTIDNKIKIENDVIEGYEFEGTMFTENRSSEFISLMNSDNGPNIRETHITCNVCKVSSNTCQFQGHMHSHTRDNLHKCKICGHFFNSKILLNKHAMIHTSKKIRPFICDICNKSYSTKSRLKIHILLHNEDNHYKCNTCNKKFSQKNHFKNHIKTHTKKTSHKCDICDQVFSLAQNLKNHTRVHTGEKPYKCKICDSVFTQASHLKCHTKVHTGEKPHKCEICDRAFSLAHNLKTHIRIHTGEKPYKCEICDSLFSQSSHLKSHTRVHTGEKPHKCGICDQGFSRADCLKHHIRVHTGEKPYKCEVCDSLFSQASHLKIHTRVHTSEKPYKCDNCEQAFFQRNHLKNHTRVHSSKYKCEKCDQVFSYISNLKTHIKTHTGENPYKCSTCNKEFSQKLNLKKHTKTHTKIKSHKCEICNSLFSQASHLKSHTKVHTGEKPYKCNICDQVFSLAHNLKSHTRVHTGEKPYKCEICDSVFSQASHLKCHTRVHTGEKPYKCEICDRVFSVAHNLKSHTRVHTGEKPYK

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00135584;
90% Identity: iTF_00135584;
80% Identity: iTF_00135584;