Agly012480.1
Basic Information
- Insect
- Aphis glycines
- Gene Symbol
- L
- Assembly
- GCA_009928515.1
- Location
- scaffold:530651-643115[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 22 3.2e-06 0.00027 21.3 1.2 1 23 166 188 166 188 0.98 2 22 1.7 1.5e+02 3.3 7.0 1 23 194 216 194 216 0.97 3 22 7e-07 6e-05 23.4 5.6 1 23 222 244 222 244 0.99 4 22 8.8e-06 0.00075 19.9 0.9 1 23 250 272 250 273 0.96 5 22 0.00011 0.0091 16.5 2.3 1 23 290 312 290 313 0.96 6 22 0.0071 0.61 10.8 0.7 1 23 337 360 337 360 0.97 7 22 0.6 51 4.7 0.9 1 23 398 421 398 421 0.95 8 22 0.0042 0.36 11.5 2.1 2 23 600 621 599 621 0.94 9 22 0.00014 0.012 16.1 1.5 1 23 629 652 629 652 0.96 10 22 0.00016 0.014 15.9 0.6 1 23 657 680 657 680 0.95 11 22 0.00065 0.055 14.1 0.8 2 23 730 751 729 751 0.96 12 22 0.082 6.9 7.4 3.6 1 23 755 777 755 778 0.96 13 22 1 89 4.0 0.2 3 23 822 844 821 844 0.86 14 22 0.0012 0.1 13.2 4.6 2 23 858 879 857 879 0.96 15 22 0.0027 0.23 12.1 0.3 1 23 889 911 889 911 0.98 16 22 0.54 46 4.9 3.3 2 23 919 940 918 940 0.97 17 22 0.0027 0.23 12.1 0.1 2 23 1015 1037 1015 1037 0.97 18 22 0.14 12 6.8 1.3 1 23 1041 1063 1041 1063 0.97 19 22 0.07 6 7.7 0.1 2 23 1075 1096 1074 1096 0.95 20 22 0.0081 0.69 10.6 0.0 1 23 1104 1127 1104 1127 0.96 21 22 0.56 48 4.8 0.2 1 23 1134 1158 1134 1158 0.94 22 22 6.7 5.7e+02 1.4 3.4 1 22 1185 1206 1185 1208 0.87
Sequence Information
- Coding Sequence
- ATGTCTAGGAGGAAACAGGCTACACCTCGTTCGCTCAGACATGGAAATCTTGATGCGGAAGATGTACTCGACGACGAAGATCTCATGCCACCGTTATCTCCTACAGGGTCTGGAAGTACGAAAAGCGATGAAGACGAGGGAGATGAGGACGACGAGGAAGAGTGCACCGTTGATGATGATGATGACGACGAAGACGACGACGACGATTTGCAGTCAGTCAGTTCTACGGAGGGATCAAACCACAGTCTACTTTCCGCACTGAGTGGCGCGGGCGAGGCGAGCACCGAAGAGGCAGCTTCGTCGTGGAGTTCGGCCGTATCGGAGGACCACACGTCGCCGGACAGCTGCGCCACGAGCAACAGCCGGCCCGGTTCCACGGTCGACCACCGACGCGATCGCCACAGCCGTCCATCGTCGTACGCAACGGCCGGAGCTGCTGCCGCTGCCGCCGTCGCCGCTGTCACAGCCGCAGCCAACTCCACCGACGCCAACCCATACGCATGCCAATACTGCGACAAGACGTTTCCCCGAGGCAGCTACCTGAAAAAACACGAACAGACTCATGGAGAATCAATGCCGTTCAAGTGTCAATTCTGCCGGAGGCTGTTCAAACACAAGCGCAGCCGAGACCGGCACGTGAAATTACACACGGGGGACAAGAAGTACAAGTGTACTCAATGTGACCATGCTTTTTCAAGGAGCGATCACCTGAAGATCCACATGAAAACGCACGACAATCAAAAACCGTTCCAGTGTACGGTTTGCAACAGAGGTTACAGCACGGCGGCCGCGCTAACGTCACACATGCAGAACCATCACAAACGGGCTGCGGAACGGGCCAACTCGCCGCAGATATCCGGCCCCTCGTACAAGTGTCTAAAGTGCACGCAAATATTCCGTAAACCCGACGAGCTTCAGAATCACACTGCGACTCATCATCTCGGCGAGCAACTGTCGTCCAACTCCCGGAGCTCGAAACGTTCGACACCGCCCAAAACGCCCAACCAGTACATTTGCATGTACTGCACCAAAGAAGTGTCCAGCATGGACGCACTGCAACAGCACTTCCAGACCAAACACTCCGCGATCGTCAACGGCAAGCCGCAAGAGGACGTCTTCTCGGCCGTACCACCGGCAGCCGCGTTCCCGTGGCTAAACTTTGCCGATTCACCAGCCCTGGCACTGCCCCCGTACTCGTGCCGGTTGTGCTTGAGCCAATTCCCGTCCGTCACTTCGTTACAGAAACACTTTACGACCGCCCACTATCTGAGTTCCGTCCTCAACAACAACATACAAAACAACAACAACAACAACAACAACAGCAACAGCAACAACAACAACACCAACGGCTGCAAAGGCGCAGGTGGCGCGATGCCCTTGTACAACTGGCCGGTAATAACCGGAGCGAACGGTTACCACAACCACCTCCAACGACACTCGACGTCGGGCGGCGGTTTGTTGCCCGAAGAAACCGTCCAGACGGGTCCCACAGATTTGTCGCTGTCGTCGTCCAAGCACGGTGGAGGCGGCGGCAAACACCATCACTCCTCGTCGGGCAAGCACAAGTCGGCCGACGACCAGCGGAACCACGCGAGCAGCAAAAAGTCCCGTTCGTCGCCGAGCCGCGATCCGTCGGCGGCCGACCAGCGTCACATAAAACAAGAACGCCACAACGCTTATGAAGGCAAACATCAGCAGCTGCAACCGACCGCGGCTCAACCTTCCTCGCAGATCGGCGTCTCCGGCGTCAACAACAACAACAACAGCATTCACGCCAACCACAACAAGATCCAATTGCCGTGTCCGCATTGCCATCTGACGTTCGCGCACTTCGAAGACTATCAGCAGCACGTCATCGGCCACTTTCTCATGGCCGCCGCCGAGTACTCGTGCCAGGAGTGTTCCACGTCGTTCGCCACGTCCGAACACGTACAGAAACACCTGATGGAAACTCACGCGCAGAACTTTTACCGGTGCATGTTGTGCAAAGAAGTGTTCCCGACCAAGTCGGCCCTGAAGGTGCACTTCAGCATGAACCACGGCAGCGAACACCGGATGTTCCGCTGCAACAACTGCACGGGGCTGTCCCGGCCGCTGTTCCAAACGGAAATAGAGTTCATCGATCATCTGCGCAACGCCCATTATTCCGCGAGATCTCCTCCGCCGGTCCAAGCGAATTTGATGCTTAGGTGTTTGGTATGCCACGCTACGTTCAACACGCAATCCGATATGGAACAACATTTAGCTAGTCACTCCAAACAATTCCAATGCCAATTTTGTTCGGAAGCGTTCCACATCGAGTTCTTGTTGGACAGACACATACAAACGCATCACAGTTCGAGTATTTTAAGTCACCTCAACCGGAACCACAGGGAATCGCCAAATTCCATGTGTACGTCACCCACGTACATTTCCAGGACGGCGGACGGCGGTAAACATCCGGCGGAAAACGGCACGAACGCTTGTGATATATGTGAGAAAAATGATTTTCGAAACGAATTGGACTTGATTGCACACAAAAGAACAATGCACCAGGTGAAACCTACGAATCTTTCGACAAAAGTGAGCTTACATTGCGCATATTGTAATGAAAACTGCAAATCGAGAACAGAATTGGAGAACCACATGAAGACGCATTCACAACACGGTTCAAACGTCGGAAAACACAAGTGCAATATTTGTGACGAAATTTATCAGTCCGCAATCAGCTTAGCCGAACACAAACTCACTCATTGCAAGGTCGCTACGAGTACCGTGTGTAGTCACTGCAAAATGATCATTGATAACGAGGATCAGTTCCATCAACATCTCCAGAAACACTGCAACCCGGCGAACGCGAACAGCGGCCAAGTGGCGTTCCCCACGTCGTGCATAATATGCAGGCAAACGCTCGTTTCAGACATCGAAGTGAAGGTGCACGTACACTATCACCTGTCCCGAGTCAAAGAATCTCCTGCCGTGTGTGGCAACTGCAACCGGTACAAGCGGTCAGCGTCGTCTCCGTGCGACGGCTGCAACCCGACCAGAAACAGTGCGGCGGAACGATGTCCTGACTGCGGTGCGGCGTTCGACGCTTTCGGCGCGCTGCAACACCACCTGACCACCGTCCACAGGAAACCTTTTCACTGTTTCAAGTGCAAGATCGGATTCGAATCGCAGCAGGAAGCCACGATCCACCTGGGCACGCACCTGGCCACGCTCAACGGTTCCGTGGACGGCATCGAGTGCGGCCTTTGCCCGTGCGTGCTGCCCACGGCCAACAGTCTCCAGACTCACCTGATCGAGCACACGTTCGCCGGCTGCAAAGCGTTCACGTGCTACTTGTGCTCGGCCATATTCACCGCGCCCACCGGACTGCAGGCGCACATGACCGTCGACCACTCGGCCGAAACGCCGCCGTACGACTGCCCCAGGCCCGGGTGCCAGGCCAAGTTCTTCTTCACCGCCGAACTGGACAGGCACACACTCGAGCACCAGGGACAGGACGTCCTGGCCAACATGAATTTTTACAAGTACCAAAACAAACTTATGTCCATCTGCGAAAAACTGTCGTTCAAGTGTGCCGAGTGCTATCAGAGCTTTTTGACCCAAGCCGACTTACAGTGTCACGTGTACGATCACCATCGGCAACCCCAAACGGATGCACCGCCGGCGGGATCGGAAACGATGGACGTCAAACAGGAAATGAGCGGATGCGTGGTTAACGGTAACGCGGAAAAGCGGCCTTTGGACGGATGCGAACGGACCGAGAATCCGATCAAAGTGGAGGAAGATGGGGACGAAGTGAGCGTGAAAACGGAACATCGCGAAAGAGACGACGATGACGAAGAGATGATTGACGTGGTAGAGAACAATCGCGATGAGCCGAAGTCGGACGAAGACGAAAACGACGTGGATATGCATTGA
- Protein Sequence
- MSRRKQATPRSLRHGNLDAEDVLDDEDLMPPLSPTGSGSTKSDEDEGDEDDEEECTVDDDDDDEDDDDDLQSVSSTEGSNHSLLSALSGAGEASTEEAASSWSSAVSEDHTSPDSCATSNSRPGSTVDHRRDRHSRPSSYATAGAAAAAAVAAVTAAANSTDANPYACQYCDKTFPRGSYLKKHEQTHGESMPFKCQFCRRLFKHKRSRDRHVKLHTGDKKYKCTQCDHAFSRSDHLKIHMKTHDNQKPFQCTVCNRGYSTAAALTSHMQNHHKRAAERANSPQISGPSYKCLKCTQIFRKPDELQNHTATHHLGEQLSSNSRSSKRSTPPKTPNQYICMYCTKEVSSMDALQQHFQTKHSAIVNGKPQEDVFSAVPPAAAFPWLNFADSPALALPPYSCRLCLSQFPSVTSLQKHFTTAHYLSSVLNNNIQNNNNNNNNSNSNNNNTNGCKGAGGAMPLYNWPVITGANGYHNHLQRHSTSGGGLLPEETVQTGPTDLSLSSSKHGGGGGKHHHSSSGKHKSADDQRNHASSKKSRSSPSRDPSAADQRHIKQERHNAYEGKHQQLQPTAAQPSSQIGVSGVNNNNNSIHANHNKIQLPCPHCHLTFAHFEDYQQHVIGHFLMAAAEYSCQECSTSFATSEHVQKHLMETHAQNFYRCMLCKEVFPTKSALKVHFSMNHGSEHRMFRCNNCTGLSRPLFQTEIEFIDHLRNAHYSARSPPPVQANLMLRCLVCHATFNTQSDMEQHLASHSKQFQCQFCSEAFHIEFLLDRHIQTHHSSSILSHLNRNHRESPNSMCTSPTYISRTADGGKHPAENGTNACDICEKNDFRNELDLIAHKRTMHQVKPTNLSTKVSLHCAYCNENCKSRTELENHMKTHSQHGSNVGKHKCNICDEIYQSAISLAEHKLTHCKVATSTVCSHCKMIIDNEDQFHQHLQKHCNPANANSGQVAFPTSCIICRQTLVSDIEVKVHVHYHLSRVKESPAVCGNCNRYKRSASSPCDGCNPTRNSAAERCPDCGAAFDAFGALQHHLTTVHRKPFHCFKCKIGFESQQEATIHLGTHLATLNGSVDGIECGLCPCVLPTANSLQTHLIEHTFAGCKAFTCYLCSAIFTAPTGLQAHMTVDHSAETPPYDCPRPGCQAKFFFTAELDRHTLEHQGQDVLANMNFYKYQNKLMSICEKLSFKCAECYQSFLTQADLQCHVYDHHRQPQTDAPPAGSETMDVKQEMSGCVVNGNAEKRPLDGCERTENPIKVEEDGDEVSVKTEHRERDDDDEEMIDVVENNRDEPKSDEDENDVDMH
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00136337;
- 90% Identity
- iTF_00136337;
- 80% Identity
- -