Agly013513.1
Basic Information
- Insect
- Aphis glycines
- Gene Symbol
- bab2
- Assembly
- GCA_009928515.1
- Location
- scaffold:6392156-6397191[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 4 1.5e-11 1.4e-08 34.4 0.0 2 38 436 473 435 478 0.89 2 4 1.3e-11 1.2e-08 34.6 0.1 2 39 490 527 489 530 0.94 3 4 2.1e-16 2.1e-13 49.9 0.0 3 45 546 589 544 589 0.97 4 4 6.3e-17 6.1e-14 51.6 0.1 1 43 596 639 596 641 0.96
Sequence Information
- Coding Sequence
- ATGTTAAGAATTAATAGAAGTACAATGACAGTTAATGGCCAGCACTACTGTCTGCGATGGAATAATTACCAATCAAACATGACTTCTGTGTTTCATCAGCTTCTTCGAAATGAATCGTTTGTTGATGTTACTCTTGCTTGTAATGAGAGCACGCTTAAAGCACACAAAGTGGTGTTATCAGCTTGTTCATCATACTTCCAAAAATTATTGATGGATAACCCATGTAAACATCCAACCATTATATTGCCTTACGATGTTTGTTTTAACGATCTTAAGTTCATCATAGAGTTTGTGTATAGAGGCGAGATTGATGTGTCTCAAGCTGAATTACAATCTCTTCTAAAAACTGCAGATCAGTTAAAGATTAAAGGACTATGTGAAGTACCTGAAGATGAACGTGATACATCTATTGTTGCTGAAGTAACTCCTTTGGGGCCATTAAAAAGTGGTGGAAGAGTGTTCACAAAATTACAACGGAGAACTTCTCCCTATTCAAAAAAATTGAGTCCTAATCAGATTCAGCAGGATCAGTTTAATCGAAGTTATTATCGAATTGAACAATCAGGTTTTACCCCTATTAGTGTTGATCAAGAAAACAAATCTATAAATACTATCCATTGCATGACTGTAGCAACATCAACTGAAGATGATGAAAAAGAATTGAAGTCAACACTAACAGATTTACCGGTGGTCATACTAGAACCACATCCTTCATTAAATTTACAAGCCCAACAACAGTCCCAGATAGTTCACATACCAATACCACCATCACAACAACAACAACAACAGCAATTAAGTCATGTAACACAACATACAAATCAACCACAGTTGCAACAAGCTGCAGTTCAAACTCATTCACAAATGATTATCACCACAGGTCCTGTTATGACAGTGAATGAAGCTGACATTTCACCTGATATACAGCCTGTTGGACCAAGGGCAACACCAGTACCAGTAAAAAATAGCACAAGTCCTTCATCAACACCTACACATAGAGATATGGCTGTTGGTACATCATGTTCAAATGATATGATGAGAAGTGATGGAAGTGAGAGAAAATTTGAAAGTACTAAATTTGAAACACTTCGTACAATTGATCAGTCATCAGATGCAATTGGAATAGAAAGACAACATTCTAATGACCGTAATATAAATGATGAAGATAATTCAATGCATACAATGATGATAACACCCGAACTTTTGGGATTATTACCAAATTCTTCTAATACAGGAGATGTTAGTGAAGATAGTTCTAGTAATAATATTAACAAACAGTATGGTACAAATGGGGGAAAAGGATGGACAGCTGATGATATGGAAAATGCTTTAGAAGCATTACGTTCACATAATATGTCTTTAACTAAAGCATCCATAACATTTGGAATTCCTTCTACAACATTATGGCAGCGGGCTCATCGAGCTGGAATAGATACTCCTAAAAAAGACGGACCTGCTAAATCTTGGAACGATGAAGCTTTAAACATTGCATTAGACGCTCTACGTACTGGCACTATTTCAGCAAATAAAGCTAGTAAAGCGTATGGTATACCTAGTAGTACATTATATAAGATTGCACGGCGGGAAGGAATTAGATTAGCTGCTCCATTCAATGCGGCACCTACTTCTTGGGGTCAGGAACAGTTAGACCAGGCATTACATGCCATACGAACAGGGCAAACGACTGTACAACGAGCTGCAGCTGACTATGGTATACCTTCTGGTACACTATATGGTCGGTGTAAACGTGAGAAAATTGAATTATCCCGCAGCAATCCAACCCCATGGTCTGAGGATGCTATGATGGAAGCTCTGGAGTCTGTACGATTAGGTCATATGAGTATTAATCAGGCAGCTATACATTACAATCTACCATATTCTTCATTATACGGACGTTTCAAAAGGGTGAAATATGGAGCTGGGCATCCAGATGATGATTGTGATGATATGATTGATTCAGATACACAAAGTGAACAACAGCACATTCAACAACAACAACAGCAGCAGGCAAATCAGCAAGTACAGGCTACTCCAGTGTCTCAAATAATGTTAGTTCAATACCCAGCACCACAGATTCAAATGTACCAACAACATCCAACTCATTCAACGACTAGTTGA
- Protein Sequence
- MLRINRSTMTVNGQHYCLRWNNYQSNMTSVFHQLLRNESFVDVTLACNESTLKAHKVVLSACSSYFQKLLMDNPCKHPTIILPYDVCFNDLKFIIEFVYRGEIDVSQAELQSLLKTADQLKIKGLCEVPEDERDTSIVAEVTPLGPLKSGGRVFTKLQRRTSPYSKKLSPNQIQQDQFNRSYYRIEQSGFTPISVDQENKSINTIHCMTVATSTEDDEKELKSTLTDLPVVILEPHPSLNLQAQQQSQIVHIPIPPSQQQQQQQLSHVTQHTNQPQLQQAAVQTHSQMIITTGPVMTVNEADISPDIQPVGPRATPVPVKNSTSPSSTPTHRDMAVGTSCSNDMMRSDGSERKFESTKFETLRTIDQSSDAIGIERQHSNDRNINDEDNSMHTMMITPELLGLLPNSSNTGDVSEDSSSNNINKQYGTNGGKGWTADDMENALEALRSHNMSLTKASITFGIPSTTLWQRAHRAGIDTPKKDGPAKSWNDEALNIALDALRTGTISANKASKAYGIPSSTLYKIARREGIRLAAPFNAAPTSWGQEQLDQALHAIRTGQTTVQRAAADYGIPSGTLYGRCKREKIELSRSNPTPWSEDAMMEALESVRLGHMSINQAAIHYNLPYSSLYGRFKRVKYGAGHPDDDCDDMIDSDTQSEQQHIQQQQQQQANQQVQATPVSQIMLVQYPAPQIQMYQQHPTHSTTS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00184731;
- 90% Identity
- iTF_01330472;
- 80% Identity
- iTF_00135522;