Acrc026205.1
Basic Information
- Insect
- Aphis craccivora
- Gene Symbol
- -
- Assembly
- GCA_009835225.1
- Location
- VUJU01004195.1:1941-4166[+]
Transcription Factor Domain
- TF Family
- zf-GAGA
- Domain
- zf-GAGA domain
- PFAM
- PF09237
- TF Group
- Zinc-Coordinating Group
- Description
- Members of this family bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 9 0.0066 66 4.5 0.1 24 50 82 108 67 110 0.80 2 9 0.072 7.2e+02 1.1 0.0 21 43 107 129 103 133 0.80 3 9 0.002 20 6.1 0.1 22 46 136 160 117 167 0.84 4 9 0.00096 9.6 7.1 0.0 21 44 191 214 183 218 0.89 5 9 0.015 1.5e+02 3.3 0.1 22 46 220 244 214 250 0.84 6 9 0.026 2.6e+02 2.6 0.0 21 45 275 299 265 306 0.82 7 9 0.014 1.4e+02 3.5 0.1 18 38 300 320 297 330 0.81 8 9 0.029 2.9e+02 2.4 0.1 21 44 331 354 324 362 0.85 9 9 0.066 6.6e+02 1.3 0.0 21 49 359 387 356 390 0.87
Sequence Information
- Coding Sequence
- atgaaatcaaTTAACGGTGTTCATCAACCATCGGATATGGTAATTAAACAGGAATATATTCCAACAGCTGACGATTATGATGCCTATCAATCATCACAAATCGGGACAAGATGTGAAACTGtacaaaaagttataaatggaACGGAAGTAAAAGTCGAAAGAGATTATATTAATGGCAGTATATTTGAAAGTATAGTTTCTAGAAGTTATTCCAATGAAAGCTCAGATCATATAGAAGACAAATCCAAGAAATGtgcaatttgtaataaatcctTTACATTAATCTGCAATTTAAAAAGACATATGAAGATCCATACTGGTGAAAAACCTTTTAAATGTGGAATATGTAAGAAAGCATTTACTCGGGCTGtgagtttaaaaaatcatacaagAACACATACTGGAGAAAACTCTTACAAGTGTgatgtttgttataaaatgttcaatagaAACAATTCTTTAATAAGACATATGAGGATCCATAGTGGAAAGAAAGCTTTAAAATGTGAAACATGCGATAAAGTATTTTCTCAAACTGGGCATTTAAATGTTCACAAAAGAACTCATACAGGTGAAAAACCTTTTAAATGTGGAATATGTGAGAAAGCATTTGCTCAGTCTgtgagtttaaaaaaacatacaagaACACATACTGGAGAAAACTCTTACAAGTGTgatgtttgttataaaatgtttaatagaaacaattctttaataaaacatatgagGATCCATAGTGgaaagaaatttttaaaatgtgaaacatgcgataaaacattttctcaAACTTCGCATTTAAAGGTTCACAAAAGAACTCATACAGGTGAAAAACCTTTTAAATGCGGATTATGTGAGAAAGCATTTGCTAAtgctgtaaatttaaaaactcataCAAGAAGACATACTGGAGAAAAACCTTTTAAATGTGGAATATGTGGTAAAGTATTTTATCAGAAGTCTGAATGCAACATTCATACAAGAACACATACAGGTGAAAAACCTTACAAATGTAATGTTTgtagaaaaacattttctgCACCCTCCAATTTAAAAGCACACATAATAACTCATACTGGagaaaaaccatttaaatgtGACATGTGTTCAAAAACATTTGCTCTTAAAGATTCTATAAAGagacacatttttaatattcatttcaaaagctgtaattaa
- Protein Sequence
- MKSINGVHQPSDMVIKQEYIPTADDYDAYQSSQIGTRCETVQKVINGTEVKVERDYINGSIFESIVSRSYSNESSDHIEDKSKKCAICNKSFTLICNLKRHMKIHTGEKPFKCGICKKAFTRAVSLKNHTRTHTGENSYKCDVCYKMFNRNNSLIRHMRIHSGKKALKCETCDKVFSQTGHLNVHKRTHTGEKPFKCGICEKAFAQSVSLKKHTRTHTGENSYKCDVCYKMFNRNNSLIKHMRIHSGKKFLKCETCDKTFSQTSHLKVHKRTHTGEKPFKCGLCEKAFANAVNLKTHTRRHTGEKPFKCGICGKVFYQKSECNIHTRTHTGEKPYKCNVCRKTFSAPSNLKAHIITHTGEKPFKCDMCSKTFALKDSIKRHIFNIHFKSCN
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00134731;
- 90% Identity
- iTF_00134731;
- 80% Identity
- iTF_00134731;