Acrc007454.1
Basic Information
- Insect
- Aphis craccivora
- Gene Symbol
- -
- Assembly
- GCA_009835225.1
- Location
- VUJU01002240.1:3379-8952[-]
Transcription Factor Domain
- TF Family
- zf-GAGA
- Domain
- zf-GAGA domain
- PFAM
- PF09237
- TF Group
- Zinc-Coordinating Group
- Description
- Members of this family bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 10 0.012 1.2e+02 3.6 0.0 22 44 200 222 196 225 0.86 2 10 2.3 2.3e+04 -3.7 0.1 23 30 259 266 255 271 0.79 3 10 5.3e-05 0.53 11.2 0.0 21 47 313 339 304 344 0.83 4 10 0.0019 19 6.2 0.0 22 44 342 364 337 368 0.89 5 10 8.9e-05 0.89 10.4 0.0 21 47 369 395 364 401 0.85 6 10 0.029 2.9e+02 2.4 0.0 21 44 397 420 393 424 0.88 7 10 4.3e-05 0.43 11.5 0.0 21 44 425 448 414 456 0.85 8 10 0.2 2e+03 -0.3 0.1 22 46 454 478 450 484 0.79 9 10 0.0027 27 5.7 0.1 21 48 481 508 472 513 0.83 10 10 0.028 2.8e+02 2.5 0.2 21 44 509 532 504 536 0.85
Sequence Information
- Coding Sequence
- atggaGCCTTTAAGAACAACTAATAGTGATTCGAGGATAAATTCCAAaactgataatcaattattgaatAGAGTTATAAAACAGGAAATCATTGATGAAACAGACGaccataataatgatgatcaattattacaaattggaTGTTtggATGGGCCGATTGATTTTAAACCAATTCGTCTTGGTAAATCAAACGCTACATCTATCCGTCCCTTCAAAGTCATCTTCAATAATCATTCTACTGCTGCTGCCATCTTATCTTCTTTCCGGGCCATGAAACTACAGTCTCCAGCTTTCCACCCTCACGTATCGATGGTACGTGACAAGACTTGTGTCGAACGTGAAAAACTTCGTGCCTGTCATTCTGAACTTGACCGTCGCTTGGAAGCTGGTAAAGTGGATTTGTCCATCATCTACCGTAATGGCATTCCATGTGTTATaactatGTGTGAAAATGAAGagataaaaacaattgataatgtgataaaaatcgaaaatgatGTTATCGAGGATTATGAATTTGAAGGAACAATATTCACCGAGAACCGCTCTTTGGAATTCATTACTTTAATGAATTCTGATAATGAACCTAACTTTAAGGAAACACCTTTAACATGTAATGTGTGTAATAAAGTATCTTCAAATTCATATCAATTTCAAGTCCATATGCATTCTCATACTGGAGATGATCTTCACAAATGCAATATctgtaatcatttttttaactcaaaaatacttttgaataaACATGCAATGATACATATTAGTAAAAGAATTAAGCCATTCATTTGTGacatttgtaataaatcatattattctaaatcatgtataaaaattcacATACTGCTTCATAATGaagataaacattataaatgtaatacttgtaataaaaaattttcccaaaaaattcatttaaaaaatcatgcaAGAGTACATACTGGAGAAAAGCCATATAAATGTGATATCTGTGATCAAGTGTTTTCTCAAGCagggaatttaaaaaatcatgcaAGAGTACATACTAGAGAAAAGCCATATAAATGTGATATCTGTGATCAAGTGTTTTCTCAAGCAGGgagtttaaaaaatcatgCAAGAGTACATACTAGAGAAAAGCCATATAAATGTGATATCTGTGATCAAGTGTTTTCTCAAGCATGGAACTTAAAAAGTCATACAAGAGTACATACTGGAGAAAAACCATATAAATGTGATGTCTGTGATCAACTGTTTTCTCAAGCAGGgagtttaaaaaatcatgCAAGAATACATACTGGAGAAAAGCCATATAAATGTGATATCTGTGATCAAGTGTTTTCTCAAGCAAGgagtttaaaaaatcatgCAACAGTACATACTGGAGAAAAATCATATGAATGTGATATATGTGATCAAGTGTTTTCTCGagcatgttatttaaaaagtcaTACAAGAGTACATACTGGAGAAAAACCATATAAATGTGATACCTGTAATCAAGTATTTTCtcgaaaacataatttaaaaaatcatgcaAGAATACATACTGGAGAAAAGCCATATGAATGTGATATATGTGATCAAGTGTTTTCTCGagcatgttatttaaaaagtcaTACAAGAGTACATACtggagaaaaataa
- Protein Sequence
- MEPLRTTNSDSRINSKTDNQLLNRVIKQEIIDETDDHNNDDQLLQIGCLDGPIDFKPIRLGKSNATSIRPFKVIFNNHSTAAAILSSFRAMKLQSPAFHPHVSMVRDKTCVEREKLRACHSELDRRLEAGKVDLSIIYRNGIPCVITMCENEEIKTIDNVIKIENDVIEDYEFEGTIFTENRSLEFITLMNSDNEPNFKETPLTCNVCNKVSSNSYQFQVHMHSHTGDDLHKCNICNHFFNSKILLNKHAMIHISKRIKPFICDICNKSYYSKSCIKIHILLHNEDKHYKCNTCNKKFSQKIHLKNHARVHTGEKPYKCDICDQVFSQAGNLKNHARVHTREKPYKCDICDQVFSQAGSLKNHARVHTREKPYKCDICDQVFSQAWNLKSHTRVHTGEKPYKCDVCDQLFSQAGSLKNHARIHTGEKPYKCDICDQVFSQARSLKNHATVHTGEKSYECDICDQVFSRACYLKSHTRVHTGEKPYKCDTCNQVFSRKHNLKNHARIHTGEKPYECDICDQVFSRACYLKSHTRVHTGEK
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00134730;
- 90% Identity
- iTF_00134730;
- 80% Identity
- iTF_00134730;