Basic Information

Insect: Aphis craccivora
Gene Symbol: L
Assembly: GCA_009835225.1
Location: VUJU01000009.1:156955-165242[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 17 0.0071 0.8 11.0 0.7 1 23 151 174 151 174 0.97

2 17 3.1 3.4e+02 2.7 1.0 1 23 225 248 225 248 0.94

3 17 0.0042 0.47 11.7 2.1 2 23 426 447 425 447 0.94

4 17 0.00014 0.016 16.3 1.6 1 23 455 478 455 478 0.96

5 17 0.00016 0.018 16.2 0.6 1 23 483 506 483 506 0.95

6 17 0.00065 0.072 14.3 0.8 2 23 556 577 555 577 0.96

7 17 0.082 9.1 7.7 3.6 1 23 581 603 581 604 0.96

8 17 1 1.2e+02 4.2 0.2 3 23 648 670 647 670 0.86

9 17 0.0012 0.13 13.4 4.6 2 23 684 705 683 705 0.96

10 17 0.0027 0.3 12.3 0.3 1 23 715 737 715 737 0.98

11 17 0.54 61 5.1 3.3 2 23 745 766 744 766 0.97

12 17 0.0027 0.3 12.3 0.1 2 23 841 863 841 863 0.97

13 17 0.14 15 7.0 1.3 1 23 867 889 867 889 0.97

14 17 0.07 7.9 7.9 0.1 2 23 901 922 900 922 0.95

15 17 0.0081 0.9 10.8 0.0 1 23 930 953 930 953 0.96

16 17 0.56 63 5.0 0.2 1 23 960 984 960 984 0.94

17 17 6.7 7.5e+02 1.7 3.4 1 22 1011 1032 1011 1034 0.87

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	17	0.0071	0.8	11.0	0.7	1	23	151	174	151	174	0.97
2	17	3.1	3.4e+02	2.7	1.0	1	23	225	248	225	248	0.94
3	17	0.0042	0.47	11.7	2.1	2	23	426	447	425	447	0.94
4	17	0.00014	0.016	16.3	1.6	1	23	455	478	455	478	0.96
5	17	0.00016	0.018	16.2	0.6	1	23	483	506	483	506	0.95
6	17	0.00065	0.072	14.3	0.8	2	23	556	577	555	577	0.96
7	17	0.082	9.1	7.7	3.6	1	23	581	603	581	604	0.96
8	17	1	1.2e+02	4.2	0.2	3	23	648	670	647	670	0.86
9	17	0.0012	0.13	13.4	4.6	2	23	684	705	683	705	0.96
10	17	0.0027	0.3	12.3	0.3	1	23	715	737	715	737	0.98
11	17	0.54	61	5.1	3.3	2	23	745	766	744	766	0.97
12	17	0.0027	0.3	12.3	0.1	2	23	841	863	841	863	0.97
13	17	0.14	15	7.0	1.3	1	23	867	889	867	889	0.97
14	17	0.07	7.9	7.9	0.1	2	23	901	922	900	922	0.95
15	17	0.0081	0.9	10.8	0.0	1	23	930	953	930	953	0.96
16	17	0.56	63	5.0	0.2	1	23	960	984	960	984	0.94
17	17	6.7	7.5e+02	1.7	3.4	1	22	1011	1032	1011	1034	0.87

Sequence Information

Coding Sequence: atgaatgacggttttatttttcgtcGTTTGATTTCAGACTCATGGAGAATCAATGCCGTTCAAGTGTCAATTCTGCCGGAGGCTGTTCAAACACAAGCGCAGCCGAGACCGGCACGTGAAATTACACACGGGGGACAAGAACGATCACCTGAAGATCCACATGAAAACGCACGACAATCAAAAACCGTTCCAGTGTACGGTTTGCAACAGAGGTTACAGCACGGCGGCCGCGCTAACGTCACACATGCAGAACCATCACAAACGGGCTGCGGAACGGGCAAACTCGCCACAGATATCCGGCCCCTCGTACAAGTGTTTACAGTGCACGCAGATATTCCGTGGGAACCCTTCGGTCTAAAGAATCACACTGCGACTCATCATCTCGGCGAGCAACTGTCGTCCAACTCCCGGAGCTCGAAACGTTCGACACCGCCCAAAACACCCAACCAGTACATCTGCATGTACTGCACCAAAGAAGTGTCCAGCATGGACGCATTGCAACAGCACTTCCAGACCAAACACTTTCGGTATTATCTAATCGTCGGATTTTGCTTGTCCACAGCCGCGATCGTCAACGGCAAGCCCCAAGAGGACGTCTTCTCGGCCGTACCGCCGGCAGCCGCGTTCCCGTGGCTCAACTTTGCCGATTCGCCAGCCCTGGCACTGCCCCCGTACTCGTGCCGATTGTGCATGAGCCAATTCCCGTCCGTCACTTCGTTACAGAAACACTTTACGACCGCCCACTATCTGAGTTCCGTCCTCAACAACAACAtacaaaacaacaacaataacaacagcaacagcaacaacaacaacaccaACGGCTGCAAAGGCGCAGGTGGCGCCATGCCCTTGTACAACTGGCCGGTAATAACCGGCGCGAACGGTTACCACAACCACCACCAACGACACTCGACGTCGGGCGGCGGTTTGTTGCCCGAAGAAACCGTCCAGACGGGTCCCACAGACTTGTCGCTGTCGTCGTCCAAGcacggtggcggcggcggcagcggcGGCAAACACCATCACTCCTCGTCGGGCAAGCACAAGTCGGCCGACGACCAGCGGAATCACGCGACCAGCAAAAAGTCCCGTTCGTCGCCGAGTCGCGATCCGTCGGCGGCCGACCAGCGTCACATAAAACAAGAACGACACAACGCTTATGACGGAAAACATCAGCAACCGCAACCGACCGCGGCTCGACCTTCCTCGCAGATCGGCgtcaacaacaataacaacaacaacattcACGCCAACAACAACAAGATCCAATTGCCGTGTCCGCACTGCCATCTGACGTTCGCGCACTTCGAAGACTATCAGCAGCACGTCATCGGTCACTTTCTCATGGCCGCTGCCGAGTACTCGTGTCAGGAGTGCTCCACGTCGTTCGCCACGTCCGAACACGTACAGAAACACCTGATGGAAACTCACGCTCAGAACTTTTACCGGTGCATGCTGTGCAAAGAAGTGTTCCCGACCAAATCGGCCCTGAAAGTGCACTTCAGCATGAACCACGGTAGCGAACACCGCATGTTCCGCTGCAACAACTGCACGGGACTGTCCCGGCCGCTGTTCCAAACGGAAATAGAGTTCATCGATCATCTGCGCAACGCCCATTACTCCGCGAGATCACCTCCGCCGGTCCAAGCGAATTTGATGCTTAGGTGTTTGGTATGCCACGCTACGTTCAACACGCAGTCCGATATGGAACAACATTTAGCTAGTCACTCCAAACAATTCCAATGCCAATTTTGTTCGGAAGCGTTCCACATCGAGTTCTTGTTGGATAGACACATACAAACGCATCACAGTTCGAGTATTTTAAGTCACCTAAACCGGAACCACAGGGAATCGCCAAATTCCATGTGTACGTCACCCACGTATATTTCCAGGACGGCGGACGGCGGTAAGCATCCGGCGGAAAACGGCACGAACGCTTGTGATATATGCGAGAAAAATGATTTTCGAAACGAATTGGACTTGATTGCCCACAAAAGAACAATGCACCAGGTGAAACCTACGAATCTTTCGACAAAAGTGAGCTTACATTGCGCATATTGTAACGAAAACTGCAAATCGAGAACAGAGTTGGAGAACCACATGAAGACGCATTCACAACACGGTTCAAATGTCGGAAAACACAAGTGCAATATTTGTGACGAAATTTATCAGTCCGCAATCAGTTTGGCCGAACACAAACTCACTCATTGCAAGGTCGCTACGAGTACTGTGTGTAGTCACTGCAAAATGATCATTGATAACGAGGATCAGTTCCATCAACACCTCCAGAAGCACTGCAACCCGGCGAACGCGAACGGCGGCCAAGTGGCGTTCCCCACGTCGTGCATAATATGCAGGCAGACGCTAGTTTCAGACATCGAAGTGAAGGTGCACGTACACTATCACCTGTCCCGGGTCAAAGAATCTCCTGCCGTGTGTGGCAACTGCAACCGGTACAAGCGGTCAGCTTCGTCTCCGTGCGACGGCTGCAACCCGACCAGAAATAGTGCGGCGGAACGATGTCCTGACTGCGGTGCGGCGTTCGACGCTTTCGGCGCCCTACAACACCACCTGACCACCGTCCACAGGAAGCCTTTTCACTGTTTCAAGTGCAAAATCGGATTCGAATCGCAGCAGGAAGCCACGATCCACTTGGGCACGCACCTGGCCACGCTCAACGGTTCCGTGGACGGCATCGAGTGCGGCCTTTGCCCGTGCGTGCTGCCCACGGCCAACAGTCTCCAGACTCACCTGATCGAGCACACGTTCGCCGGCTGCAAAGCGTTCACGTGCTACTTGTGCTCGGCCATATTCACCGCGCCCACCGGGCTGCAGGCGCACATGACCGTCGACCACTCGGCCGAAACGCCGCCGTACGACTGCCCCAGACCCGGATGCCAAGCCAAGTTCTTCTTCACGGCCGAACTGGACCGGCACACCCTCGAGCACCAGGGACAGGACGTCCTGGCCAAcATGAATTTCTACAAGTACCAAAACAAGCTTATGTCCATCTGCGAAAAACTGTCGTTCAAGTGTGCCGAGTGCTATCAGAGCTTTTTGACACAAGCCGACTTACAGTGTCACGTGTACGATCACCATCGGCAACAAACGGATGCACCGCCGGCGGGATCGGAAACGATGGACGTCAAACAGGAAACGAGCGGATGCGTGGTTAACGGTAACGCGGAAAAGCGACCTTTGGATGGATGCGAACGGACCGAGAATCCGATCAAAGTGGAGGAAGACGGGGACGAGGTGAGCGTGAAAACGGAACACCGTGAAAGAGACGACGAGGACGAAGAGATGATTGACGTGGTAGAGAACAATCGCGATGAGCCGAAGTCGGGCGAAGACGAAAACGAGGCGGATATGCATTGA
Protein Sequence: MNDGFIFRRLISDSWRINAVQVSILPEAVQTQAQPRPAREITHGGQERSPEDPHENARQSKTVPVYGLQQRLQHGGRANVTHAEPSQTGCGTGKLATDIRPLVQVFTVHADIPWEPFGLKNHTATHHLGEQLSSNSRSSKRSTPPKTPNQYICMYCTKEVSSMDALQQHFQTKHFRYYLIVGFCLSTAAIVNGKPQEDVFSAVPPAAAFPWLNFADSPALALPPYSCRLCMSQFPSVTSLQKHFTTAHYLSSVLNNNIQNNNNNNSNSNNNNTNGCKGAGGAMPLYNWPVITGANGYHNHHQRHSTSGGGLLPEETVQTGPTDLSLSSSKHGGGGGSGGKHHHSSSGKHKSADDQRNHATSKKSRSSPSRDPSAADQRHIKQERHNAYDGKHQQPQPTAARPSSQIGVNNNNNNNIHANNNKIQLPCPHCHLTFAHFEDYQQHVIGHFLMAAAEYSCQECSTSFATSEHVQKHLMETHAQNFYRCMLCKEVFPTKSALKVHFSMNHGSEHRMFRCNNCTGLSRPLFQTEIEFIDHLRNAHYSARSPPPVQANLMLRCLVCHATFNTQSDMEQHLASHSKQFQCQFCSEAFHIEFLLDRHIQTHHSSSILSHLNRNHRESPNSMCTSPTYISRTADGGKHPAENGTNACDICEKNDFRNELDLIAHKRTMHQVKPTNLSTKVSLHCAYCNENCKSRTELENHMKTHSQHGSNVGKHKCNICDEIYQSAISLAEHKLTHCKVATSTVCSHCKMIIDNEDQFHQHLQKHCNPANANGGQVAFPTSCIICRQTLVSDIEVKVHVHYHLSRVKESPAVCGNCNRYKRSASSPCDGCNPTRNSAAERCPDCGAAFDAFGALQHHLTTVHRKPFHCFKCKIGFESQQEATIHLGTHLATLNGSVDGIECGLCPCVLPTANSLQTHLIEHTFAGCKAFTCYLCSAIFTAPTGLQAHMTVDHSAETPPYDCPRPGCQAKFFFTAELDRHTLEHQGQDVLANMNFYKYQNKLMSICEKLSFKCAECYQSFLTQADLQCHVYDHHRQQTDAPPAGSETMDVKQETSGCVVNGNAEKRPLDGCERTENPIKVEEDGDEVSVKTEHRERDDEDEEMIDVVENNRDEPKSGEDENEADMH

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00136337;
90% Identity: iTF_00136337;
80% Identity: -