Acrc004777.1
Basic Information
- Insect
- Aphis craccivora
- Gene Symbol
- foxd5-b
- Assembly
- GCA_009835225.1
- Location
- VUJU01001004.1:7224-12834[-]
Transcription Factor Domain
- TF Family
- Fork_head
- Domain
- Fork_head domain
- PFAM
- PF00250
- TF Group
- Helix-turn-helix
- Description
- The fork head domain is a conserved DNA-binding domain (also known as a winged helix) of about 100 amino-acid residues. Drosophila melanogaster fork head protein is a transcription factor that promotes terminal rather than segmental development, contains neither homeodomains nor zinc-fingers characteristic of other transcription factors [1]. Instead, it contains a distinct type of DNA-binding region, containing around 100 amino acids, which has since been identified in a number of transcription factors (including D. melanogaster FD1-5, mammalian HNF-3, human HTLF, Saccharomyces cerevisiae HCM1, etc.). This is referred to as the fork head domain but is also known as a 'winged helix' [1, 2, 3]. The fork head domain binds B-DNA as a monomer [2], but shows no similarity to previously identified DNA-binding motifs. Although the domain is found in several different transcription factors, a common function is their involvement in early developmental decisions of cell fates during embryogenesis [3].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 1 6.6e-41 1.2e-37 128.5 0.0 2 87 185 269 184 270 0.98
Sequence Information
- Coding Sequence
- ATGTGCTGCGTGGTGATTGGCACCGCCGGAATGCAGGACGACGATCATCACCATCACCATCAGAACCGTCACCAGCAACACCAACACCaccgcagcagcagcagcagcagcaacagtaGCGGCAGCGGAAGTGCTCTGGCCACTACGTCGCCCTCTTCCACCGCTGCGGCCGCGGCAGCCGCCGTGTTCCTGCCCGTTTACGATTTTAGCCGCCGATATCAGGCCGCCCTGGACTCGGCGGTCATGCATCAAGTGGTCAGCCCGCTGGACCTGAGAGGCGTCGGAGCCGCGTCCGCTGCAGCGATGGTGCAGGCCGGCTCGACAGCGGCGTCCGTGTCGCCGCCGTGCAGCGTCGGCTCGGCCGAGACGACCGACGTGAACGTCGATTcggccgacgacgacgacgactacgACGCGGCAGTGGTCGCGGCCGGATGCAACGACAACAACAACGGCGGTGGCCGCAGCAAGACGACTTCGCCGGGCGCGCAAGAGGGCGCGTGCAGCGAGGACGGCGACAAGACTTCGGCCGCCGGCAACGGATCGCCCGTCAAGCCGCCGTACAGTTACATAGCGCTGATCACCATGGCCATACTGCAGTCGCCGCACAAGAAGCTCACCCTGAGCGGCATCTGCGAGTTCATCATGTCCCGGTTCCCGTACTATCGGGACAAGTTTCCCGCCTGGCAGAACTCCATCAGGCACAACCTGTCGCTCAACGACTGCTTCATCAAGATACCCCGGGAACCGGGAAACCCGGGAAAGGGCAACTACTGGACCCTGGACCCGATGGCCGAGGACATGTTCGACAACGGCAGTTTTCTGCGCAGACGAAAGCGATACAAGCGAATGCAGGCCCCCTCGGACTTTTTCATCCATCGCGGCGACCACCACCCTCAACACCATCCGCACCATCACCATCACCATCCGCACCACAGCCATTTCGCCGCGGCCGCCGATCCGTACTCGGTGTTGCACCACCACCATCACTACCCTTACCATCATCTCGGACCGCCGCCGCTGCCGAGCCATCCTTCGCAGGCCCAGGCACAGCCCCTGCAGGGATCGCAGTCACAGCAACATTCGCCGCAGCCGCCGACCGCGTCCGCGCCCCCCATGCAACCCTTACAGTTACCGGCCGCCGAGCTGGCGCGCATAACGTTCGGTCTGAACCTGCTGCACAACGGGCAAGTGGCCGCCGCCGCGGCGGCCGCGGCTGCGGCCGCGGCTTACAAACCGCAACAGCTTGCGCAGCCTCCGCTGGTGACGCACCAGCACGGCAATCTCATTCAGCCGTCGTACGCGACCACCGTGGTGGCCGGCGGCGGTCGGTTGGCGGTCAAACAGCCGTCCACCGGGTTCAGCATCGATTCCATCATGGGCAAGAGGTCGTCGCCCGCACCGCCGGCCAACGTGTCGCCGGCCCGACCGGGTGGCCGTCACCCGTTGCAGCAGCGCGAgcccgacgacgacgacgacgacgaagacgATCGCAACGAACGCCGCCGTCACCACGACGCCGCGGTCGTCTCGCCGCAGCCGTCGGCCAGACCGAATTTCGATTCGGCGTTCACGCCGCTCCAGCAGACCACGTGGGCCAGGTGA
- Protein Sequence
- MCCVVIGTAGMQDDDHHHHHQNRHQQHQHHRSSSSSSNSSGSGSALATTSPSSTAAAAAAAVFLPVYDFSRRYQAALDSAVMHQVVSPLDLRGVGAASAAAMVQAGSTAASVSPPCSVGSAETTDVNVDSADDDDDYDAAVVAAGCNDNNNGGGRSKTTSPGAQEGACSEDGDKTSAAGNGSPVKPPYSYIALITMAILQSPHKKLTLSGICEFIMSRFPYYRDKFPAWQNSIRHNLSLNDCFIKIPREPGNPGKGNYWTLDPMAEDMFDNGSFLRRRKRYKRMQAPSDFFIHRGDHHPQHHPHHHHHHPHHSHFAAAADPYSVLHHHHHYPYHHLGPPPLPSHPSQAQAQPLQGSQSQQHSPQPPTASAPPMQPLQLPAAELARITFGLNLLHNGQVAAAAAAAAAAAAYKPQQLAQPPLVTHQHGNLIQPSYATTVVAGGGRLAVKQPSTGFSIDSIMGKRSSPAPPANVSPARPGGRHPLQQREPDDDDDDEDDRNERRRHHDAAVVSPQPSARPNFDSAFTPLQQTTWAR
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00972856; iTF_00135121; iTF_00940179; iTF_00018821; iTF_01303989; iTF_01305349; iTF_01304662; iTF_01328417; iTF_00184412; iTF_01032686; iTF_01031759; iTF_01167408; iTF_00463161;
- 90% Identity
- iTF_00135121;
- 80% Identity
- -