Basic Information

Insect: Aphidoletes aphidimyza
Gene Symbol: -
Assembly: GCA_030463065.1
Location: CM059996.1:12242525-12243996[+]

Transcription Factor Domain

TF Family: zf-GAGA
Domain: zf-GAGA domain
PFAM: PF09237
TF Group: Zinc-Coordinating Group
Description: Members of this family bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 5 0.00012 0.81 10.0 0.1 15 46 148 179 143 185 0.77

2 5 0.0041 27 5.1 0.1 21 45 182 206 177 210 0.90

3 5 0.00019 1.3 9.4 0.0 4 47 242 286 240 291 0.88

4 5 0.006 39 4.6 0.0 21 44 288 311 286 318 0.91

5 5 0.00012 0.81 10.0 0.1 26 48 343 365 332 368 0.94

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	5	0.00012	0.81	10.0	0.1	15	46	148	179	143	185	0.77
2	5	0.0041	27	5.1	0.1	21	45	182	206	177	210	0.90
3	5	0.00019	1.3	9.4	0.0	4	47	242	286	240	291	0.88
4	5	0.006	39	4.6	0.0	21	44	288	311	286	318	0.91
5	5	0.00012	0.81	10.0	0.1	26	48	343	365	332	368	0.94

Sequence Information

Coding Sequence: ATGACCTCAatcgcaaataaaaatgcacactGTGCTGTTTCCGCTTCGTTGAAATCGACCGACATGTCGACAGTGATAAAAAATCATTCCAATATACACGAATCAGAGCTGCAGGCTGAAACAATTGAAGTGATACCGGAGTTACCGTTTCACGACAGCGAAGATGATTTTAGTGAGTACAGTGATGAAAATGAGGCAGCCATCGAAAATGGGCATCCATTTGGATTAAATATAACGGATGAAGATGATGAACCGTTCGATGAGTATGCTTATCAAGTGATGTCGAACCACAATGAACCGCAAACTATTTGGTTTGACAATTCCCAATTGAAAACGCTGCCATTGAATAGCTCGACAGGTGACAGTGATGTGATATTAATCGATGATGACGATAGTGATggtgattttaatgaaaacagTAACGGAGGCCTTACCTACGAACCTTCGGACAATTCCAGCGATCAAAAAATCTATTCATGTGATATTTGCCACAGCAAACTATCGAGTAGCTACAATTTAAAACGTCATAAAATGATTCATAGTGgtgaaaaaccatttcaatgtgaagTGTGCGAAAGACGATTCAGAGAGCAAAGTGACTTGAGGAAACATAAAAAGGTCCATAACAATGATTCAACCGTGAAATGTTCGGTTTGTCATCGGAATCAACCGTCCAATCGCAATTCGTCGAAATGTGCTTCATGCGAGAAGCAAGAAATGGTTAAGCGATTCCAACATCCCATTTCCGATGAGATAATGCCACGCATTgatgccaacaacaaaaaagcatttgTATGCACATATTGTGATCGAGCCTTCGGAAGCAGCTCAAATCTAAAAAGGCATGTTATGATTCACACCGgagaaaaaccatttaaatgcCCTGATTGCAATCGTCCGTTCCGCGAAATGagcacattgaaaaaacactTGATCACACATCGCAGGCAAAATGGTTTTATCAATGTTAAACCACCAGCTTTATTAGAGTCAAAGCAGCATACTCCAGTACAGGGCTCACTACATAAGTGTCCATTGTGCAAGACTATTTGCAGAGGCACCGAAAATCTCATGAATCACATCACTTTAGCTCATCCACcgagtaaaataaaaaccaatggTTCTTCCGCAGTTACCGTTCGAAAGTTGACAAAATCACCGCCGCCACtcattccaatcaataaaGTCGCCTTTAATTACTTGAATGCCAAAcgaattttaaaacaatga
Protein Sequence: MTSIANKNAHCAVSASLKSTDMSTVIKNHSNIHESELQAETIEVIPELPFHDSEDDFSEYSDENEAAIENGHPFGLNITDEDDEPFDEYAYQVMSNHNEPQTIWFDNSQLKTLPLNSSTGDSDVILIDDDDSDGDFNENSNGGLTYEPSDNSSDQKIYSCDICHSKLSSSYNLKRHKMIHSGEKPFQCEVCERRFREQSDLRKHKKVHNNDSTVKCSVCHRNQPSNRNSSKCASCEKQEMVKRFQHPISDEIMPRIDANNKKAFVCTYCDRAFGSSSNLKRHVMIHTGEKPFKCPDCNRPFREMSTLKKHLITHRRQNGFINVKPPALLESKQHTPVQGSLHKCPLCKTICRGTENLMNHITLAHPPSKIKTNGSSAVTVRKLTKSPPPLIPINKVAFNYLNAKRILKQ

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00133715;
90% Identity: iTF_00133715;
80% Identity: iTF_00133715;