Aaph010238.1
Basic Information
- Insect
- Aphidoletes aphidimyza
- Gene Symbol
- Trl
- Assembly
- GCA_030463065.1
- Location
- CM059998.1:13785884-13788307[-]
Transcription Factor Domain
- TF Family
- zf-GAGA
- Domain
- zf-GAGA domain
- PFAM
- PF09237
- TF Group
- Zinc-Coordinating Group
- Description
- Members of this family bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 6.1e-29 4e-25 87.8 5.7 1 54 231 284 231 284 0.99 2 2 2.6 1.7e+04 -3.8 0.2 16 24 312 320 309 325 0.75
Sequence Information
- Coding Sequence
- ATGAATTCTCTGTACAGTTTGACATGGGGCGATTATGGCACATCACTTGTTTCAGCAGTTCAATTGCTTCGATGTCACGGCGATTTGGTCGATTGCACTTTAGCTGCCGGCGGTCGAAGCTTTCCAGCACATAAGATCGTTTTGTGTGCGGCCAGCCCATTTTTGTTGGACTTGCTTAAGaatacGCCGTGCAAGCATCCAATTGTGATGTTAGCTGGAGTAAATGCCAGTGACCTAGAAGCTCTGTTGGAGTTTGTGTATAGAGGTGAAGTAAGTGTTGATCACTCTCAACTGCCATCACTTTTGCAAGCTGCATCTTGTCTGAACATACAGGGCTTGGCACCCCAGACAGTCACTAAAGACGAGTACAACACTACTTCGATTCAACTTCATCCCAGCCTGTTGGCACAACACCATGTTAAAGCTGTGATTGATGTTGGGAATGGAACAATGAATGAGGATCTGATGACAGCTATTCACGAATCATCACCGCAACATCAAACCATTCAAGCTCATGTTGTTGAAGAAATTATGCCTGATCAATTGACTGAAGTAACGGATGTGAAGGAGGTGATAAATCAGCTGCTGCCGACTCGCAAACGAAAACCACGGGTCAAAAAACCCACTGTACCAAAACCATCGGATGGGTCACACGCTACAAACGCAGAAAATGAGATCGAAAATTCtccaccaaaaccaaaaaaaccaaaagctCCGCGTGATCCCAACAaaacaaaatcCCGTTCGCAATCTGAACAACCAGCATCTTGTCCAATTTGTGGCGCAGTCATAAAACAGTCTCGAAATCTACGTCGTCACTTGGAATTAAGACATTTTTCGAAACCAGGCATCAAGAAAGAACGTAAAAGCAACGCCAATTCGAACATACCAAGTATGCAAACAGTAACAGTAAAAAAAGAACCCGAAGAAATATCATCGACCTCACAACAAGAGCAGGCGCAGCAGATCCACATTCAGCAGCCTCAAACTCAAACCATTGCTGTGTCGGTTGCACCGAATCAAAGCTCTACACACACTATCGTCGAGACTGCCAATACTAGTGCACACCAACCACAGCACATAGTTACACAACATGATAATTCAGATGGCTCTACGTCGTTACAAATTGCACAGGTACAAAATATGCCAGCAACACATCAACTCACATTGAGCAATCTAAATCAGACAAGTAAAAATCATATCGTGCtgaaaaaagtgatttttgtcAAAGGAAATAATTCAAACTCGTAA
- Protein Sequence
- MNSLYSLTWGDYGTSLVSAVQLLRCHGDLVDCTLAAGGRSFPAHKIVLCAASPFLLDLLKNTPCKHPIVMLAGVNASDLEALLEFVYRGEVSVDHSQLPSLLQAASCLNIQGLAPQTVTKDEYNTTSIQLHPSLLAQHHVKAVIDVGNGTMNEDLMTAIHESSPQHQTIQAHVVEEIMPDQLTEVTDVKEVINQLLPTRKRKPRVKKPTVPKPSDGSHATNAENEIENSPPKPKKPKAPRDPNKTKSRSQSEQPASCPICGAVIKQSRNLRRHLELRHFSKPGIKKERKSNANSNIPSMQTVTVKKEPEEISSTSQQEQAQQIHIQQPQTQTIAVSVAPNQSSTHTIVETANTSAHQPQHIVTQHDNSDGSTSLQIAQVQNMPATHQLTLSNLNQTSKNHIVLKKVIFVKGNNSNS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00133382; iTF_01288289; iTF_01288387; iTF_01288684; iTF_01288685; iTF_01351309; iTF_01350854; iTF_00367828; iTF_00367310; iTF_00957215; iTF_00957628;
- 90% Identity
- iTF_00133382;
- 80% Identity
- iTF_00133382;