Basic Information

Insect: Aphidoletes aphidimyza
Gene Symbol: Snapc4
Assembly: GCA_030463065.1
Location: CM059999.1:42649328-42660330[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 20 0.0025 0.14 12.8 1.6 1 23 122 144 122 144 0.98

2 20 2e-06 0.00011 22.5 6.8 1 23 150 172 150 172 0.99

3 20 0.00092 0.051 14.2 7.4 1 23 176 198 176 198 0.98

4 20 0.68 38 5.1 1.3 1 20 205 224 205 226 0.92

5 20 0.036 2 9.2 2.5 1 23 232 255 232 255 0.97

6 20 5.6e-05 0.0031 18.0 5.1 1 23 261 284 261 284 0.97

7 20 0.024 1.3 9.7 0.8 1 23 468 491 468 491 0.95

8 20 0.0025 0.14 12.8 1.6 1 23 654 676 654 676 0.98

9 20 3e-06 0.00017 22.0 6.5 1 23 682 704 682 704 0.99

10 20 0.00092 0.051 14.2 7.4 1 23 708 730 708 730 0.98

11 20 0.68 38 5.1 1.3 1 20 737 756 737 758 0.92

12 20 0.028 1.6 9.5 2.9 1 23 764 787 764 787 0.90

13 20 5.6e-05 0.0031 18.0 5.1 1 23 793 816 793 816 0.97

14 20 0.00065 0.036 14.6 2.2 1 23 993 1015 993 1015 0.99

15 20 0.0019 0.11 13.2 6.6 1 21 1021 1041 1021 1042 0.95

16 20 6.2 3.5e+02 2.1 5.6 1 21 1049 1069 1049 1074 0.90

17 20 0.0024 0.13 12.9 2.8 1 23 1078 1100 1078 1100 0.99

18 20 7.1e-06 0.00039 20.8 2.4 1 23 1106 1128 1106 1128 0.99

19 20 1.2 68 4.3 2.0 1 20 1135 1154 1135 1156 0.91

20 20 0.033 1.9 9.3 0.9 1 23 1162 1185 1162 1185 0.94

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	20	0.0025	0.14	12.8	1.6	1	23	122	144	122	144	0.98
2	20	2e-06	0.00011	22.5	6.8	1	23	150	172	150	172	0.99
3	20	0.00092	0.051	14.2	7.4	1	23	176	198	176	198	0.98
4	20	0.68	38	5.1	1.3	1	20	205	224	205	226	0.92
5	20	0.036	2	9.2	2.5	1	23	232	255	232	255	0.97
6	20	5.6e-05	0.0031	18.0	5.1	1	23	261	284	261	284	0.97
7	20	0.024	1.3	9.7	0.8	1	23	468	491	468	491	0.95
8	20	0.0025	0.14	12.8	1.6	1	23	654	676	654	676	0.98
9	20	3e-06	0.00017	22.0	6.5	1	23	682	704	682	704	0.99
10	20	0.00092	0.051	14.2	7.4	1	23	708	730	708	730	0.98
11	20	0.68	38	5.1	1.3	1	20	737	756	737	758	0.92
12	20	0.028	1.6	9.5	2.9	1	23	764	787	764	787	0.90
13	20	5.6e-05	0.0031	18.0	5.1	1	23	793	816	793	816	0.97
14	20	0.00065	0.036	14.6	2.2	1	23	993	1015	993	1015	0.99
15	20	0.0019	0.11	13.2	6.6	1	21	1021	1041	1021	1042	0.95
16	20	6.2	3.5e+02	2.1	5.6	1	21	1049	1069	1049	1074	0.90
17	20	0.0024	0.13	12.9	2.8	1	23	1078	1100	1078	1100	0.99
18	20	7.1e-06	0.00039	20.8	2.4	1	23	1106	1128	1106	1128	0.99
19	20	1.2	68	4.3	2.0	1	20	1135	1154	1135	1156	0.91
20	20	0.033	1.9	9.3	0.9	1	23	1162	1185	1162	1185	0.94

Sequence Information

Coding Sequence: ATGGAAACTGTTGGCTTCATCAACGAACCATTAACTCAGACTGGATATGGTCTGTCTGACGATAATCAGTCAACTGATTCACATTTGGGAAGCTCAGTGAATGAGGAAAAGACCAACTCAatcgatgacgatgacgatgacaatgtgaatgtaaaatcGGAAATGGAAGCAAATGAATTGGAATACGTGATAGAAATAGATGGCTCGAGTGACGAAGAAGACATGATCGACGATCCATTCAGaatattgaatccaaaagACGTCACACACGGAATTGGTACTAGATCATCTCTGCGACTAATGGCAAGAGCAAACGATGAATCAAATGCTCAGAAGCCATCATGTTCAAAGAATGCAAAGCGATTCAATTGCAAGCTTTGTGAATATGGAAGTGATCACAAAGGGAGTCTCAGTGTGCATATGCGAACGCACAACAAAGAGAAACCTTTTCGATGCAGCCGATGTTCTAAACGCTTTACAAATTCGTCACATCTCAAATCACATATGAGGACGCATAATAAACCACATCGATGCAGTCATTGTTCGAAAAGATTCAACCAATTGCAGCTTCTCAAAACACATATGACAACTCACAAAGACAGAAGACTCCTGTTTCATTGTAAAGGATGTTTTCAAAGATTTGCAAAGGAAAGTGAAAAGAAAGCACATGAAAAAGGCTGTCGATATCGTCGTTACGAATGTGATATTTGCAAGAATTTTGTCACTCGTTATAAATCTCATATGGAAACACACATGCGAGTTCACACGGGTGAAACCCCGTTTCGCTGCAAGGTTTGCATGAAATGCTTCAATCAAAAAGGCAATCTTAAGAAACACATGAAGAACGTTCACAACAGACGCAACTTATTGTCAACCAGTTACACCaaagttcaaattgaaaccaaagGAGGTCAAACGGAAACTGGTGACTTTATCAACGAACCTTCGGCTCAGGCTGGATATGGAATTTCAGTGAAAGAGGAAAATATCAACTTAATCGATgacaatgtgaatgtgaaatgggAAGAGATTGAAACTCGAGTGGACTCAGTGGTAGAAAAACTCAACTCGGGCTACGAAGAAGACATCGATGAATCGCAGAACTATCACTTagaaaccaaaattgaatgggAGGAAACTGATTGGACGAACGATGCGTTTGGCAACGAAGTGAGTCACAACAACGACGAAGGGAACATTGATGACGACTACGTCTCTTTGAATGATGGATACAGTACAGGTAATGACGTCACAAATGGGAATCGTGATGGATCATCTTCACGACGGAAGAAAAAGAAGGAGAAGCCATCATGTCTAAAGCCATCAAAGGATTCGAAACGATTCAAATTTCCGAAGGAAAGTGAGAAGAAAGATCATGAAAAAGACTGTCGATATCGTCGTTACGAATGTGACATCTGCAAGAAATATGTCACTAATAATAAAACTCAAATGGAAATACACATGCGAAGTCATACGGGTGAAAAACCGTTTCGCTGCGAGTCCTTCAATAGATTGTCGACCAGTTACACCAAAGTCCAAACTGAAATTAACAGAAGTCAAATGGAAACTGTTGGCTTCATCAACGAACCATTAACTCAGACTGGATATGGTCTGTCTGACGATAATCAGTCAACTGATTCACATTTGGGAAGCTCAGTGAATGAGGAAAAGACCAACTCAATCGATGACGATGAAGATGataatgtgaatgtgaaattggaggagaatgcaaatgaattggaaTACGTGATAGAAATAGACGGCTCGAGTGACGAAGAAGACATGATCGATGATCCATTCAGaatattgaatccaaaagACGTCTCTTCGAATGGTGGATGTAGAACAGATGGTGATGTCTCACACGGAATTGGTACTAGATCATCTCTGCGACTAATGGCAAGAGCAAACGATGAATCAAATGCTCAGAAGCCATCATGTTCAAAGAATGCAAAGCGATTCAATTGCAAGCTTTGTGAATATGGAAGTGATCACAAAGGGAGTCTCAGTGTGCATATGCGAACGCACAACAAAGAGAAACCTTTTCGATGCAGCCGATGTTCTAAACGCTTTACAAATTCGTCACATCTCAAATCACATATGAGGATGCATAATAAACCACATCGATGCAGTCATTGTTCGAAAAGATTCAACCAATTGCAGCTTCTCAAAACACATATGACAACTCACAAAGACAGAAGACTCCTGTTTCATTGTAAAGGATGTTTTCAAAGATTTGCAAAGGAAAGTGAAAAGAAAGCACATGAAAAAGGCTGTCGATATCGTCGTTACGAATGTGATATTTGCAAGAAATTTGTCACTCGTTATAAATCTCATATGGAAACACACATGCGAGTTCACACGGGTGAAACCCCGTTTCGCTGCAAGGTTTGCATGAAATGCTTCAATCAAAAAGGCAATCTTAAGAAACACATGAAGAACGTTCACAACAGACGCAACTTATTGTCAACCAGTTACACCaaagttcaaattgaaaccaaagGAGGTCAAACGGAAACTGGTGACTTTATCAACGAACCTTCGGCTCAGGCTGGATATGGTCTGCCTGACGATGATCAGTCAACTAGTTCATTTTTAGGAATTTCAGTGAAAGAGGAAAATATCAACTTAATCGATgacaatgtgaatgtgaaatgggAAGAGATTGAAACTCGAGTGGACTCAGTGGTAGAAAAACTCAACTCGGGCTACGAAGAAGACATCGATGAATCGCAGAACTATCACTTagaaaccaaaattgaatgggAGGAAACTGATTGGACGAACGATGCGTTTGGCAACGAAGTGAGTCACAACAACGACGAAGGGAACATTGATGACGACTACGTCTCTTTGAATGATGGATACAGTACAGGTAATGACGTCACAAATGGGAATCGTGATGGATCATCTTCACGACGGAAGAAAAAGAAGGAGAAGCCATCATGTCAAAAGCCATCAAAGGATTCGAAACGATTCAAGTGTATGCATTGTGAATATGGAACTAATGAGAAAGGAAATCTCAATCAACATATTCGAACGCACACAAATGAGAAACCTTATCGATGCAGCTGTTGTGATAAATGCTTTGTACATTCGTCGAGCCTCAAAAGACATATGGCGAAAAATAAGTACGAATTTCCATTCCATTGCTCGAAATGTTTCCGCAGATTCAttcgaaagaatgaaaaagagtCACATGAACAGAGGTGCGGAAATCATagcaataaatatgaatgctATGTTTGTAAGTATTTCACCAGCATTAAGCCACATTTGGTTAGACACATGCGTACGCACAGCGGTAATAAGCCATATCGATGCAGTCAATGCTCCAAAGTATTCACCCAATCGCTGAATCTCAAAATGCACATGACAACTCACAAAGACAAAAATCTCCCGTTTCATTGTAAAGGCTGTTTTCGCAGATTTCCGAAGGAAAGTGAAAAGAAAGATCATGAAAAAGACTGTCGATATCGTCGCTTCGAATGTGACATCTGCAAGAAATATGTCACTAATAATAAAACTCAAATGGAAATACACATGCGAAGTCATACGGGTGAAAAACCGTTTCGCTGCGAGAATGATAGTGAATATGACGAATGGGTGGTTGACGATATTAATTATGTGCAAGAAGCTCAACAAATGGTTTGCAATTACAGTCAAATATCCATCGAAAATGCACTCATTCTAAATAAACAGATGCGATCCTatttaaacgatttaaaaCATGAACTCGAACGAATGCTAAGCGTATGCCAAgagaaatacaaacaaaatgatgtgCGGCTGGCTGACATGAGCAAAATCAAACCAACACCAAAAATCTACACCACATATTATTTCTGTGGTTATCCATTTTTTAAAGATCGAATGGGCGGTGCACCACCAAAATCGGCCGAATATTTACGACGTTCGGAAACCGATGGTGAATTATTTCCATTGGATTTAGAAAAGCGTGCTTTATGGTTGCCACGTGATAAAGTTGAATTGGTACAAGGTGTTAAAAAGCAAACCATTGCGTATTTACAATCAATGCATCGAAATCGAATTCGACAAGCAGCCGGCAAACGGTGTGCTAGTGAACTGACGGCTCGAATTCAAAATGAAAGTGATGCATTGGAAAATATGCATTTGAGTGAGCTGTTTAAGAAAACTGAAGGAAGTGATTTCCGTATCAATtggttcaatgtttcaatggatGCTCTGCAAGATCGTCATTCAGCCAACGAATGCATGGCGATGTGGAATGCTTATTTAATGCCAACACTAAATCGAAAATCATGGACACCGGCTGAAGAGGATAAATTATTAAATGCTGCTATCAAATATGATGCACAAAATTGGCCAGAAATTGCTAAAGCCGTGGAAAATCGTTCGGTTTATCAATGTTTGGTGCACTATCAAACccaatttaatgtgaaaagtGTGCAAAAAAATGTACGCTGGACAACGGACGAGGATCAACAGTTGATGGCATGTGTGGACAAATTTCGCATCGGTAACATTATACCGTGGACTAAAGTGATGGAAAGTTGCCCGGGTCGAAGTAAACTTCAGCTGTACAACAGGTACATGTTTTCATTGAACCCAGAGATAAATCGAGCTCCATTCACCGTTGAAGAGGACTGCATACTAATGGCCGCCATAAAAGAATATGGTTTAAATTATCGTGAATTTCCAACGAATTTATTGCCCGGTCGAAGTATGAAACAAATTCGAAGTCGATACAACAATGTGTTGAAGCATGTAAATGTGCGTGAGCATTGGACTGAACAACATGATCAAAAGCTAATGCAATTGGTTGAACAGCATGGTACAACCGAATGGGCAAAAATTGccgaacaaatgataaatcatAGTCGAACATCATGCCGTCAACGATACACAACGATAAAACGATTTCTTGACAAACATCCCGGTAAAACGGTACTCGATGTACCACGACGAAAACgtgcattttcaacaaatgttaCCACCGACAATTGGATGAAAACAATCATTGAAGCGaaacatttcgattcaatcgaatcagctgaatcaatggaatttcaaGTAAACACTGGTccacaaaacaacgaaaaacccaacaacaaaacacaattataTAATACACCGTATTGGGATCTATTGAAATATTcgtataattttaaatttggtaCAGCAATTGCTGGCAGTGAtgcattatttgaaaatgttcaaattgcaTGCCAATTATTGCAAGCACCATCACTGCCCGCCCGTATTGATGTCACGGATAAATGGTTTAGTGGTTTTgtgcaaatggaaaaacaagcgaaaaaaatccaacttGAATCGGATTTACTGCGTTCACTGATTCAATTgggaaaaaatgattttttttatcccgTCAATTTCAATACCGTCCTTGGAATGCGTGGATTAACAATTATGTTTGAAACGGTTGATAAGAGAAAATCATCGGCCAAAGCTATTAAAGCCGAACCAAATGCCATTGAGGAACATGATGCGCTCAATCTCTTTAAAATGCgttttaaatccatttttaagCACACGGCAGCCGTTTCACAGTTACAACGATCACTAACATCGGTTTCACTGCGATTAAGGAATCAAAAACGAAGCCTAATGGAAATGCAAATGGTCACACCGTTAAATCCAGATGTTGACACCAATACCGCTGATCAACATTTGGTTGGTGTTCAAACCGAACCCAAAATCACAACAATATGTGAATCGGAAGAGTTAACAATGAGCGAAAGTGAATGTCAACCACGGAAACGATGCCGTGTTACCGTTCTCGAGAGTATTCCAGTCAATATAATCGATCAAAATGCCATTGATCCATTATCACAAGCATCAACATCCACTGAAATTAAATACAATCGCTATCGATATCGTGTTGAAACATCAGACAGCATTcatgaaaccaaaattcaacCGTATTACAGTGAAAGTGAAACAGAAGGTACGGTTGGTGATGAGACGGATTTTGTCATTTGGACACCAACTCTAACTGATGAAGCTACCGGTTCGACTACAATTAAACCAGAAAAAAAGTga
Protein Sequence: METVGFINEPLTQTGYGLSDDNQSTDSHLGSSVNEEKTNSIDDDDDDNVNVKSEMEANELEYVIEIDGSSDEEDMIDDPFRILNPKDVTHGIGTRSSLRLMARANDESNAQKPSCSKNAKRFNCKLCEYGSDHKGSLSVHMRTHNKEKPFRCSRCSKRFTNSSHLKSHMRTHNKPHRCSHCSKRFNQLQLLKTHMTTHKDRRLLFHCKGCFQRFAKESEKKAHEKGCRYRRYECDICKNFVTRYKSHMETHMRVHTGETPFRCKVCMKCFNQKGNLKKHMKNVHNRRNLLSTSYTKVQIETKGGQTETGDFINEPSAQAGYGISVKEENINLIDDNVNVKWEEIETRVDSVVEKLNSGYEEDIDESQNYHLETKIEWEETDWTNDAFGNEVSHNNDEGNIDDDYVSLNDGYSTGNDVTNGNRDGSSSRRKKKKEKPSCLKPSKDSKRFKFPKESEKKDHEKDCRYRRYECDICKKYVTNNKTQMEIHMRSHTGEKPFRCESFNRLSTSYTKVQTEINRSQMETVGFINEPLTQTGYGLSDDNQSTDSHLGSSVNEEKTNSIDDDEDDNVNVKLEENANELEYVIEIDGSSDEEDMIDDPFRILNPKDVSSNGGCRTDGDVSHGIGTRSSLRLMARANDESNAQKPSCSKNAKRFNCKLCEYGSDHKGSLSVHMRTHNKEKPFRCSRCSKRFTNSSHLKSHMRMHNKPHRCSHCSKRFNQLQLLKTHMTTHKDRRLLFHCKGCFQRFAKESEKKAHEKGCRYRRYECDICKKFVTRYKSHMETHMRVHTGETPFRCKVCMKCFNQKGNLKKHMKNVHNRRNLLSTSYTKVQIETKGGQTETGDFINEPSAQAGYGLPDDDQSTSSFLGISVKEENINLIDDNVNVKWEEIETRVDSVVEKLNSGYEEDIDESQNYHLETKIEWEETDWTNDAFGNEVSHNNDEGNIDDDYVSLNDGYSTGNDVTNGNRDGSSSRRKKKKEKPSCQKPSKDSKRFKCMHCEYGTNEKGNLNQHIRTHTNEKPYRCSCCDKCFVHSSSLKRHMAKNKYEFPFHCSKCFRRFIRKNEKESHEQRCGNHSNKYECYVCKYFTSIKPHLVRHMRTHSGNKPYRCSQCSKVFTQSLNLKMHMTTHKDKNLPFHCKGCFRRFPKESEKKDHEKDCRYRRFECDICKKYVTNNKTQMEIHMRSHTGEKPFRCENDSEYDEWVVDDINYVQEAQQMVCNYSQISIENALILNKQMRSYLNDLKHELERMLSVCQEKYKQNDVRLADMSKIKPTPKIYTTYYFCGYPFFKDRMGGAPPKSAEYLRRSETDGELFPLDLEKRALWLPRDKVELVQGVKKQTIAYLQSMHRNRIRQAAGKRCASELTARIQNESDALENMHLSELFKKTEGSDFRINWFNVSMDALQDRHSANECMAMWNAYLMPTLNRKSWTPAEEDKLLNAAIKYDAQNWPEIAKAVENRSVYQCLVHYQTQFNVKSVQKNVRWTTDEDQQLMACVDKFRIGNIIPWTKVMESCPGRSKLQLYNRYMFSLNPEINRAPFTVEEDCILMAAIKEYGLNYREFPTNLLPGRSMKQIRSRYNNVLKHVNVREHWTEQHDQKLMQLVEQHGTTEWAKIAEQMINHSRTSCRQRYTTIKRFLDKHPGKTVLDVPRRKRAFSTNVTTDNWMKTIIEAKHFDSIESAESMEFQVNTGPQNNEKPNNKTQLYNTPYWDLLKYSYNFKFGTAIAGSDALFENVQIACQLLQAPSLPARIDVTDKWFSGFVQMEKQAKKIQLESDLLRSLIQLGKNDFFYPVNFNTVLGMRGLTIMFETVDKRKSSAKAIKAEPNAIEEHDALNLFKMRFKSIFKHTAAVSQLQRSLTSVSLRLRNQKRSLMEMQMVTPLNPDVDTNTADQHLVGVQTEPKITTICESEELTMSESECQPRKRCRVTVLESIPVNIIDQNAIDPLSQASTSTEIKYNRYRYRVETSDSIHETKIQPYYSESETEGTVGDETDFVIWTPTLTDEATGSTTIKPEKK

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00133175;
90% Identity: iTF_00133175;
80% Identity: iTF_00133175;