Basic Information

Insect: Aphidoletes aphidimyza
Gene Symbol: -
Assembly: GCA_030463065.1
Location: CM059999.1:11395499-11397163[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 14 0.00025 0.014 16.0 0.1 1 23 3 26 3 26 0.94

2 14 3.1e-05 0.0017 18.8 2.8 1 23 32 54 32 54 0.98

3 14 8.6e-05 0.0047 17.4 1.8 2 23 93 115 92 115 0.95

4 14 3.5e-05 0.002 18.6 3.8 1 23 121 143 121 143 0.99

5 14 0.0089 0.49 11.1 4.0 1 23 182 205 182 205 0.96

6 14 2.9e-06 0.00016 22.0 2.8 1 23 211 233 211 233 0.98

7 14 0.00031 0.017 15.7 0.1 1 23 269 292 269 292 0.96

8 14 0.00025 0.014 15.9 6.3 1 23 299 321 299 321 0.98

9 14 0.00052 0.029 15.0 0.7 2 23 355 377 354 377 0.95

10 14 7.4e-06 0.00041 20.8 4.6 2 23 386 408 386 408 0.97

11 14 0.00081 0.045 14.4 0.5 2 23 424 445 423 445 0.97

12 14 0.00014 0.0077 16.8 2.8 2 23 451 473 450 473 0.96

13 14 0.00056 0.031 14.9 1.6 1 23 479 504 479 504 0.96

14 14 0.042 2.3 9.0 2.2 3 23 513 534 512 534 0.89

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	14	0.00025	0.014	16.0	0.1	1	23	3	26	3	26	0.94
2	14	3.1e-05	0.0017	18.8	2.8	1	23	32	54	32	54	0.98
3	14	8.6e-05	0.0047	17.4	1.8	2	23	93	115	92	115	0.95
4	14	3.5e-05	0.002	18.6	3.8	1	23	121	143	121	143	0.99
5	14	0.0089	0.49	11.1	4.0	1	23	182	205	182	205	0.96
6	14	2.9e-06	0.00016	22.0	2.8	1	23	211	233	211	233	0.98
7	14	0.00031	0.017	15.7	0.1	1	23	269	292	269	292	0.96
8	14	0.00025	0.014	15.9	6.3	1	23	299	321	299	321	0.98
9	14	0.00052	0.029	15.0	0.7	2	23	355	377	354	377	0.95
10	14	7.4e-06	0.00041	20.8	4.6	2	23	386	408	386	408	0.97
11	14	0.00081	0.045	14.4	0.5	2	23	424	445	423	445	0.97
12	14	0.00014	0.0077	16.8	2.8	2	23	451	473	450	473	0.96
13	14	0.00056	0.031	14.9	1.6	1	23	479	504	479	504	0.96
14	14	0.042	2.3	9.0	2.2	3	23	513	534	512	534	0.89

Sequence Information

Coding Sequence: ATGGATTATATGTGTGATATTTGCGGCAAAGCCATAAAACGTTTCGAACTTTTGGAAGAGCACATGAGTGCATTCCATTCGGCTCGTGATAGTTTTCAATGTAGAATATGTGGACGATGCTATCCAAATCGTTACTATTTGAGCAAACATGTTGCTCGTCACAAAGATGCCACGGCAGCTAACATTAACGAATGTGCCGATGATCTGGACAAAGGTTTAATGGaacgaaacaaatacaatcgaTCGTGCAATCCGAAGCAACGCGAAATCAATTTGACTTGTGATGAATGTGGTCGGATATTCAAGCATAACTATCTCTTGTTGGAGCACAAAAACTCGAAACACTCAGGCGCGAGCACATTTCAGTGTAGAAAATGTGGCAGATATTATCCAAATCGCTATTACTTAACGAAACATTTGAAACGCCATGAGGATGCTGAAAAGAATGGCGTTCCATTCGATCAACTTGGTAACGATTTGGATGAAGGTTTGATGGAGAGGAATAGATATGTGCGATCGGATCCAAACGAAGATAAAACATCATTCGATTGTGAAGAGTGCGGGAGCACTTTTAAGAAATTCTGTTTGCTAACAGAGCATAAACGGTCAAAACATTCCTACGATAATGGTTTTCCGTGTAGAAAATGCGGTCGACGTTATCCAAACCGGTATTATTTGACTAAGCATATGAAGCGTCACcaaaataatgatgaaaaccaaaatctGGACTCATCAGAtgatgattcaattgaattcgaacgAAAGCCAAACGTTCAAAATCATCCACATCAACCAAAATCAGAATTTACGTGCGAAGATTGTGGAATGATATACAATACATTCGAATTGCTTGAGGAGCACATTACATCGAATCATTCAAACAAAGCAGCCGGTTTTATGTGCCGGATATGCAGTCGCGTGTGTCCCAATCGACACTCTCTTCGAAAGCATATGAAGAAACATCAAACTAAGAggaaagaagaagatgaaaattTGGATGAGGATCTAATGGAACGGTCTAAATACATAAGAGCGCATCCACATCGTCCAACCTCCAATCTTACTTGTGATATTTGCCAAAAGGTTCTATCCAACTACTATTCAATGAAAGATCACATGTCTTCGAAGCACTCTGGCAAAACAAAAGTAAAGcgcaaatgcacaaaatgtaataaaacatttgtatcgaaaaaatcacttgaaaagcATCAAAGACAAAAGCATACGGATGATCCTGAGGCGATCAAATCAAAAgttgaaaccaaacaaatgtgttcaatttgtGGCCGACTTTTTCCCGACCGATCGAAAATGCTTTCACACGAGAAAACACACTTCGGCATAATGACATCGTGTGATATTTGTGGCAAGAAGTTTTTGCACAAAAACTATCTGCGAAAGCATATCAAAAGTGTTCATGCACGCGTCCGACCATTTAGTTGTAATGTTGATGGATGCAAATGGACATTCGCGTATCCCCAGTGCTTAAAGCGACATCAGGCTCGACGGCATGGCATGGTCACACATCGAAATGCGTGCCCGATTTGCTCCAAAGAATTTCCCGACAGTACTTATCATCTTAAACGTCACTTGAAAGCGCATGCAAATAATACAGCCAAAGAGTACATTCCAGAACCGAAGCCAGGTGCACAGCCAACAGCATAA
Protein Sequence: MDYMCDICGKAIKRFELLEEHMSAFHSARDSFQCRICGRCYPNRYYLSKHVARHKDATAANINECADDLDKGLMERNKYNRSCNPKQREINLTCDECGRIFKHNYLLLEHKNSKHSGASTFQCRKCGRYYPNRYYLTKHLKRHEDAEKNGVPFDQLGNDLDEGLMERNRYVRSDPNEDKTSFDCEECGSTFKKFCLLTEHKRSKHSYDNGFPCRKCGRRYPNRYYLTKHMKRHQNNDENQNLDSSDDDSIEFERKPNVQNHPHQPKSEFTCEDCGMIYNTFELLEEHITSNHSNKAAGFMCRICSRVCPNRHSLRKHMKKHQTKRKEEDENLDEDLMERSKYIRAHPHRPTSNLTCDICQKVLSNYYSMKDHMSSKHSGKTKVKRKCTKCNKTFVSKKSLEKHQRQKHTDDPEAIKSKVETKQMCSICGRLFPDRSKMLSHEKTHFGIMTSCDICGKKFLHKNYLRKHIKSVHARVRPFSCNVDGCKWTFAYPQCLKRHQARRHGMVTHRNACPICSKEFPDSTYHLKRHLKAHANNTAKEYIPEPKPGAQPTA

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00133591;
90% Identity: iTF_00133591;
80% Identity: -