Basic Information

Insect: Aphidoletes aphidimyza
Gene Symbol: -
Assembly: GCA_030463065.1
Location: CM059999.1:11399596-11401935[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 14 0.00046 0.026 15.1 0.5 1 23 131 154 131 154 0.95

2 14 1.6e-05 0.0009 19.7 3.1 1 23 160 182 160 182 0.98

3 14 0.00011 0.0061 17.1 1.8 2 23 221 243 220 243 0.95

4 14 4.5e-05 0.0025 18.3 3.8 1 23 249 271 249 271 0.99

5 14 0.00069 0.039 14.6 2.0 1 23 310 333 310 333 0.96

6 14 3.7e-06 0.00021 21.7 2.8 1 23 339 361 339 361 0.98

7 14 0.0004 0.022 15.3 0.1 1 23 397 420 397 420 0.96

8 14 3.1e-06 0.00017 21.9 0.7 1 23 427 449 427 449 0.98

9 14 0.00066 0.037 14.6 0.7 2 23 483 505 482 505 0.95

10 14 9.5e-06 0.00053 20.4 4.6 2 23 514 536 514 536 0.97

11 14 0.001 0.057 14.0 0.5 2 23 552 573 551 573 0.97

12 14 0.0001 0.0055 17.2 2.0 2 23 579 601 578 601 0.96

13 14 0.0009 0.05 14.2 0.3 1 23 607 632 607 632 0.96

14 14 0.043 2.4 8.9 1.9 3 23 641 662 640 662 0.89

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	14	0.00046	0.026	15.1	0.5	1	23	131	154	131	154	0.95
2	14	1.6e-05	0.0009	19.7	3.1	1	23	160	182	160	182	0.98
3	14	0.00011	0.0061	17.1	1.8	2	23	221	243	220	243	0.95
4	14	4.5e-05	0.0025	18.3	3.8	1	23	249	271	249	271	0.99
5	14	0.00069	0.039	14.6	2.0	1	23	310	333	310	333	0.96
6	14	3.7e-06	0.00021	21.7	2.8	1	23	339	361	339	361	0.98
7	14	0.0004	0.022	15.3	0.1	1	23	397	420	397	420	0.96
8	14	3.1e-06	0.00017	21.9	0.7	1	23	427	449	427	449	0.98
9	14	0.00066	0.037	14.6	0.7	2	23	483	505	482	505	0.95
10	14	9.5e-06	0.00053	20.4	4.6	2	23	514	536	514	536	0.97
11	14	0.001	0.057	14.0	0.5	2	23	552	573	551	573	0.97
12	14	0.0001	0.0055	17.2	2.0	2	23	579	601	578	601	0.96
13	14	0.0009	0.05	14.2	0.3	1	23	607	632	607	632	0.96
14	14	0.043	2.4	8.9	1.9	3	23	641	662	640	662	0.89

Sequence Information

Coding Sequence: ATGACAGCTCTCTTAGGTAATTTTGAACCTCCCCCACTGGAGTCGATCAAACAAGGTGCTGTTTTAATCAAACAGGAGCCGGCCAATGAGCTGGAATCCGATCAACTTGATGAACCATTAAATGTTAAAACTGATGtcgatttcaataattttgggGAGATTTTTACGGCAAACCTTAGCACAAGCATCGaaacaaatgacaacaatACAGTAAATGCAACACTGCCACAAcacaatgatgatgaaatgcaCTTTTTAAGCAGTTTGAATTCTCAATACACGTTCAATGTGATCAATGTGGAagaattgaacaattcaacGAATACCAGCGATTATTTGATTGTGAGGAAAAAATACGCACGAAATCATCCCCATCGTCCTAAAATGGATTATACGTGTGATATTTGCGGCAAAGccataaaacatttcaatcttTTGGAAGAGCACATGAGCGCATTCCATTCGGCTCGTGATAGTTTTCAATGTAGAATATGTGGACGATGCTATCCAAATCGTTACTATTTGCGCAAACATGTTGCACGCCACAAAGATGCCACGGCAGCTAACATTAACGAATGTGCCGATGATCTGGACAAAGGTTTAATGgaaagaaacaaatacaacCGACCGTGCAATCGGAGGAAAcgcaaaatcaatttgacttGTGATGAATGTGGTCGGATATTCAAGCATAACTATCTCTTGTTGGAGCACAAAAACTCGAAACACTCAGGCGCGAGCACATTTCAGTGTAGAAAATGTGGCAGATATTATCCAAATCGCTATTACTTGACGAAACATTTGAAACGCCACGAGGATGCTGAAAAGAATGGCATTCCATTCGATCAACTTGGAAATGATTTGGATGAAGATTTGATGCAGAAGAATAGATATGTGCGATCGGATCCAAACGAAGATAAAACATCATTCGATTGTGAAGAGTGCGGGAGCACTTTTAAGAAATTCTATTTGCTAACAGAGCATAAACGGTCAAAACATTCCTACGACAATGGTTTTCCGTGTAGAAAATGCGGTCGACGTTATCCGAACCGATATTATTTGACTAAGCATATGAAGCGTCACcaaaataatgatgaaaaccaaaatctGCACTCATCAGATGATGATTCAATTGGATTCGAACGAAAGCCAAACGTTCAAAATCATCCACACCAACCAAAATCAGAATTTACGTGCGAAGATTGTGGAATGATATACAATACATTCGAATTGCTTGAGGAGCACATTACATCGAATCATTCAAACAAAGTGGCCGGTTTTATGTGCCAGATATGCAGTCGCGTCTATCCCGATCGGGACTCTCTCCAAAATCATATGAAGAAACATCAAACTAAGCGGatgaaaaaagatgaaaatttgGATGAGGATCTAATAGAACGGCCCAAATACATGAGAGTGCATCCACATCGTCCAACCTCCAATCTTACTTGTGATATTTGCCAAAAGGTTCTATCCAACTACTATTCAATGAAAGATCACATGTCATCTAAGCACTCTGGCAAAACAAAAGTGAAGcgcaaatgcacaaaatgtaataaaacatttgtatcgaaaaaatcacttgaaaagcATCAAAGACAAAAGCATACGGATGTTCCTGAGGCGATCAAATCAAAAgttgaaaccaaacaaatgtgttcaatttgtGGTCGACTATTTCCCGACCGATCGAAAATGCTTTCACACGAGAAAACACACTTCGGCATAACGATATCGTGTGAAATTTGTGGCAAGAAGTTTTTGCACAAAAACTATCTTCGAAAGCATATCAAAAGTGTTCATACAGGCGTCCGACCATTTAGTTGTAATGTTGATGGATGCAAATGGACATTCGGGTACCCACAGGGCTTAAAGCGACATCAGGCTCGACGGCATGGCATGGTCACACATCGAAATGCGTGCCCGATTTGCTCCAAAGAATTTCCCGACAGTACTTATCATCTTAAGCGTCACTTGAAAGCGCATGCAAATAATACGGCCAAAGAGTATATTCCAGAACCGAAGCCAGATACACCACAGCCAACAGCATAA
Protein Sequence: MTALLGNFEPPPLESIKQGAVLIKQEPANELESDQLDEPLNVKTDVDFNNFGEIFTANLSTSIETNDNNTVNATLPQHNDDEMHFLSSLNSQYTFNVINVEELNNSTNTSDYLIVRKKYARNHPHRPKMDYTCDICGKAIKHFNLLEEHMSAFHSARDSFQCRICGRCYPNRYYLRKHVARHKDATAANINECADDLDKGLMERNKYNRPCNRRKRKINLTCDECGRIFKHNYLLLEHKNSKHSGASTFQCRKCGRYYPNRYYLTKHLKRHEDAEKNGIPFDQLGNDLDEDLMQKNRYVRSDPNEDKTSFDCEECGSTFKKFYLLTEHKRSKHSYDNGFPCRKCGRRYPNRYYLTKHMKRHQNNDENQNLHSSDDDSIGFERKPNVQNHPHQPKSEFTCEDCGMIYNTFELLEEHITSNHSNKVAGFMCQICSRVYPDRDSLQNHMKKHQTKRMKKDENLDEDLIERPKYMRVHPHRPTSNLTCDICQKVLSNYYSMKDHMSSKHSGKTKVKRKCTKCNKTFVSKKSLEKHQRQKHTDVPEAIKSKVETKQMCSICGRLFPDRSKMLSHEKTHFGITISCEICGKKFLHKNYLRKHIKSVHTGVRPFSCNVDGCKWTFGYPQGLKRHQARRHGMVTHRNACPICSKEFPDSTYHLKRHLKAHANNTAKEYIPEPKPDTPQPTA

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00133598;
90% Identity: iTF_00133598;
80% Identity: -