Aaph004996.1
Basic Information
- Insect
- Aphidoletes aphidimyza
- Gene Symbol
- hang
- Assembly
- GCA_030463065.1
- Location
- CM059996.1:52431327-52442196[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 24 0.0035 0.19 12.4 2.1 2 23 230 252 230 252 0.95 2 24 0.34 19 6.1 3.1 2 22 325 345 324 345 0.93 3 24 0.46 25 5.7 0.8 3 21 355 373 354 374 0.95 4 24 0.045 2.5 8.9 0.4 3 23 415 436 413 436 0.90 5 24 1.3 71 4.3 0.2 2 22 477 497 476 499 0.87 6 24 0.00051 0.028 15.0 0.8 3 23 539 560 537 560 0.95 7 24 0.00088 0.049 14.2 0.1 1 23 568 591 568 591 0.98 8 24 0.013 0.71 10.6 0.4 1 23 607 630 607 630 0.93 9 24 0.051 2.8 8.7 0.5 1 23 633 655 633 655 0.97 10 24 0.00042 0.023 15.2 1.0 1 23 661 684 661 684 0.96 11 24 8.7e-05 0.0048 17.4 2.1 2 23 768 790 767 790 0.96 12 24 0.029 1.6 9.5 3.1 2 23 817 839 816 839 0.96 13 24 0.018 1 10.1 0.5 2 23 848 870 847 870 0.95 14 24 2.8e-05 0.0016 18.9 1.2 1 23 909 932 909 932 0.96 15 24 0.0012 0.065 13.8 1.1 2 23 961 982 960 982 0.97 16 24 0.0019 0.1 13.2 1.1 2 23 991 1013 990 1013 0.96 17 24 6.6e-05 0.0037 17.8 1.0 2 23 1021 1042 1020 1042 0.97 18 24 0.029 1.6 9.4 4.9 2 23 1079 1100 1078 1100 0.96 19 24 0.0013 0.073 13.7 0.6 1 23 1148 1170 1148 1170 0.93 20 24 0.004 0.22 12.2 0.1 3 23 1209 1230 1208 1230 0.91 21 24 0.058 3.2 8.5 0.6 2 23 1253 1274 1252 1274 0.94 22 24 1.6e-05 0.0009 19.7 0.4 3 23 1288 1308 1288 1308 0.99 23 24 5.9e-05 0.0033 17.9 1.0 1 23 1425 1447 1425 1447 0.98 24 24 0.18 10 6.9 2.1 2 23 1564 1586 1563 1586 0.93
Sequence Information
- Coding Sequence
- atgaccGACGAGGCATTGAAAAGAATAGCTCGCAGTGGCGGATGTCGTTTGTGTCTCGCTCCTGATTCGGAATGTGTTCCAATTTTTGCAACAGCTGCTGCTGACAAGGAGCcactttcaaataaaattctttcATGTGTCAGCATTAAGATACTGCCAGCAGATCGGATGTCAAATCGGATATGCCATGCGTGTATCAGTTTTTTGAACTCATGGCAAAGCTTCAAGAATCGTTGCCACACCGCacagaagaaacaacaaaatttcctCGATCTATTGTTGGCCAAAGAGCGTGCAAAGCAAAAAACAGAGAATGATAGACAACGTCAAATACAACAAGAAAATATACCAGTCGATGTTGACCAACAGAGAATTCTGAAAAATGCATTGCTCAGTTCTACAATGCGGTTGAATGCGATTAGCAACTCATCGATCGATGTTAGCTTTATCAAAGAGGAGCCTGAAGACATATCAAGCGATATCGATGAAATGGATAATGTGGATCCAACACAGTTTCTAGCTCAAGAGAATGATGAAGAAATGGATCACGATAAGCATCCATCAATTTTAGCATCTCTCGGGTTAACACACATCAGCCATCAAAATACAGACAATAGCAACGATCAAATGGACGAATCGTATGGTCAACAAAGTGGGAATAATTCAGTTGCAGGACGGTCGCAAGCCAGTTGCACCATTTGCCATATGCAGTTCTCAAATCGGGCGAATGCCCGTCGACATGAACGAAACATTCATGGCATTCGGATATCAGTTCAGGGTTCCACAACGATCATTCAACCAAAAGACAGGCCAGAGATCTCAATTACCGCACCCATTAAATTGAAGCGTCCCCTCGATACACCAGCCGTTTATGATTATACCAAGCCAGAATTGTACAGAAGTTTCTTAACCGAACCACGTTTAAACTTTATTAGACGTCACCTGGAATTTTTGGAACAATATCAAACAATGACCTGTAAATGCTGCGACAAACAATTCCCAACATACAAATTTTTCATGGCTCACATGCGTAAAAAATATGATACACTGTCACGAAATCTATGCTTCAAGTGTTTAAAACAATTCCAAACCAAACCACAATTCATTGCCCATTTGAAAAAACGCAATTGCTTGAATTTATATCGAGTATTTATGGCCGATGATACGATAACAAAAGAACCGCTGCCAAACGCCCCAATACGACATGGATCGAAGGAAAtcattgcaaacaaaacatatgGCTGTCGGCTGTGTACGGAAACGTTCCGCCTCAAGTCTGATTTTCGAACGCACGTTATTGATGCACACAGTGATGCACAGAAGCGAGAAGTTCCAGGTTCCAATTCATGCGGCTATTGCAATCTGGAATTTGAAGATGGCAACGAACGACGACGACATTTCAGCAATGTTGAATGTATGGTCTTCTTGATTTGTGGCACTTGTGAagagaaattcaattcacaccCCGAATATATTGACCACGTATATGCAACACATATTCCAACAGCGAATGCAACGCCAATAAAACAGGAATTTTTGCTAgatgatgaaaatggtttgcTAGCCGAAGAGCCAACACCATCTTCTCAGTCGAAAGCGAGAAGCCCACAAAACTGTACAGTGTGTGGCAAACAATACAACAATTACTATAACGTTTTGCGGCATATGGAGTCGAAGCATCCAGATCAAGTGCCAACTACATATCGATGTGATCGTTGCGAAATTGGATATCCACGTCAAGTAGAATTGCGTGAGCATATGCTACGTGTACACAATGAACGACTCAAATTTGATGctatcaaaatgaaacgtgAACAGTTTATATGTCGCGAATGTAAGGCTTCTTTCGATACCAAAGATTCTTGGCTTACTCATCAAACGGAAGACCATTCCAAGTTTTGTTGCAATCAATGTGAAGAGGAAATTGAAACAAAGGATGACTTTTTGGCCCATCTTGCTACACATTCAGAAGCAAAGTCGTTCAAGTGTCCAGTTTGTCAACACTCTTTCAGTTCGGAGCGTGGATTCGAGACACACTTATCAGTCGTTCACAATATGACCAAAGAAGAAGTGGCTGACAATAATCTGGACGGAAGTGATTTCGGCGAAATTGCAGTTGAATGTGCGGTCGAGATAAACGGTGAGAATGATACGGACAACGAAAATATCAACGATGCAGAAGACTTGGACGGCAACGAAGCTGACATTGATGAAACCATTGAACATCCTgccaaacgaataaaaattgacATAACCGAACAAGAACCAAATGCTCCAGATAGTGAAAGTTCGATAAGCACCACTTGCCGCATTTGCAAGGAAACGTTCAAAACGAGAATGTTGCTAATGCAGCATATGAGAAGTTCGCATAGTTCAGTTCCAAAATTGCCATCGCTTACTGCTTCGCCTCACTTGGCCGTCCAAACACACAATGTTAATAATCGGCTTCGTTGTCGCATTTGCCAAAAACGTATTCACACGAAAAATGGATACAAACGCCACATGCTAACCGTACATAATGTAAACAATTGCGTTTTCATAAAATGCACTTTATGTCCATCTGAGTTCAGCAATGATAAAGGTTTGAAGGTTCATATGTTCCGTACGCATAATATTACTGTGCAGCAAATGCAAGCCGATGAGAGTTTGGTGCCAATACCAAAACAAGAATCCACATCGCCTACTCCAACACCAGTTGTACCAAGAGttgaaccaaaacaaatgtttgaatgcAACATTTGCCACACGGTATATCGCAGTAGAGATCAATTAAAAGCACATCGTAGCATTGTGCATAGCATAAATGACAGcGACTTGAACGAGACAGATTTAATAGATACTATGATTGAGGATAATACTTTTGCTGGCGAGTCATGGTGGCAGTGCCGTTTCTGTAATGAATCATTTAACGCCAGCAAAAAGTTGACCATCCACATGAACAGTCACAGCGAGTATGATAACAAAGAGACCAAATGTAAGGATTGTGGTAATGTGTACGGGACACGAAAGTCACTTTGGGTTCATCGACAAAAAAAGCATCCTCGGTTACCCAATCCATCGCCCTGTGAATTGTGCGACAAGACATTCTTTGATAAAACGGAacttttttatcatttgaaaacacACTCAAATGATGATGTGTTTTCGCATTTACAAGCCATGCAGGAGCAACTCGAAGCCGAACAAGAGAGTCGCCAAAAACAAGAGCAGCTGGGAGAAGGACAAGAAAATCTATCGTGCCATATTTGTAGTCAAAGATTCCATGATAAACGTGTTCTCAGCAAACATCTTCGATTGCATGAGTCTCAAAAACAGAGTGAGAGTTCATTCAATAATAGTGCCCTTGCGGCCATGCTAGCAGATACAAATATTAGCACTGATGAAAATTTAGGTGAATACAGTTATCCATCGTATAAAGGTCAAAACGTagaaaatggtgattttgCTTGTGATATGTGTCCGAAAAAGTTCTCACATGTGAACGCACTGAAAGTACACCGTGGTTGGCATTTCCGTTCACCgGACGGACGTCAAATCACCGATAGCAACAGCATTTGGCGACCTGATGTTGGTGGCGGCGGTAGCAATAAAAATAGACGCTCCAGAGCAGCAAATCCACCAATTTGCCCGTATTGTAAGTCGACCTTTGCCAGTGGCAACAATTTGAGGCGTCACATTGTTGAAGTTCACAAGAGAAATGAAGCTAAAATGATGCGTGAAAATGGCGCTGAAACGACCTTTATTGAGAAAGAATGTGAGTGTCAATCATGCGGCATCACATTCAATACAAGACCGGAGTGGGTTGAACACAAAATATCACATGCTCGCACTATGAAACCATCAACCACATACGAATGGGGCTGTGAAATTTGTGGCAAAGTGTTCACACGTAAAGAGAGGCTACTAGTCCATATGACATCGCACATGAATAGTCAAGAGGAAGAGATCAATCAGAGAAAAGCTGAAATGGGATTTGAAAGTAATTCGCAAAGCTCGATGTCTTCATtatcacaacaacaatcgCAGGAAACAAATAGTTTGCGAAACGCTCTACAAAAGAATTCAGGCGAAACGAAGTCGTCAATTTCATTACTCAAACAACCGTCTTTGCTTAAGCAATCCTTACAAGGAAAAACACTACAGCAAACACAGCAATCAACTTCGAATGACAGAAAACAACATAGAAACACAGAGTCTGATGCCTCGCTTGATTCGGATGAAGAGCACTCAAATGAGCCTGAAGAGGAACAAAACTACAATCTAAAACAGAACTATTCGTGTGATTTGTGTGATTTATTCTTCAAAACTGCAAAAGAGCTACGACAACACGTCAAGAGTCATATTGAATCTATAAGCGGCGGTCCTGCTGAAGAATCAAATTTCGATGATGAGCAATACGATGGCACTGAAATAGAAGACCAAGACGATGAGGATGAACAAGATGAACAGAGCGATCAAGACGAACAAGATAACCAGGAAGACCATTATATTGAGGACAGTATCGATGAAGAAATGGGCGAAGAAGAAATGGTTGAGGAGGACTTTGAGGATGAAGTTGATGAAGACGAGCAAAATGAAGAAGGATCATCAAATGTAACTGGCTTCAATTGTCGACTATGTGGTTCAAATAGCGAATCACACATCAATATGATTAAATGTATGGAAAGccaccaaatgaaaatgaatacacaGTGCGAACAATGtcaattatattttatgaacAACAATCAATTAGAGACTCATGAAATGCTTTGCCACCCGCAAGAGGATTTTGACGAAGATAGCGATTAA
- Protein Sequence
- MTDEALKRIARSGGCRLCLAPDSECVPIFATAAADKEPLSNKILSCVSIKILPADRMSNRICHACISFLNSWQSFKNRCHTAQKKQQNFLDLLLAKERAKQKTENDRQRQIQQENIPVDVDQQRILKNALLSSTMRLNAISNSSIDVSFIKEEPEDISSDIDEMDNVDPTQFLAQENDEEMDHDKHPSILASLGLTHISHQNTDNSNDQMDESYGQQSGNNSVAGRSQASCTICHMQFSNRANARRHERNIHGIRISVQGSTTIIQPKDRPEISITAPIKLKRPLDTPAVYDYTKPELYRSFLTEPRLNFIRRHLEFLEQYQTMTCKCCDKQFPTYKFFMAHMRKKYDTLSRNLCFKCLKQFQTKPQFIAHLKKRNCLNLYRVFMADDTITKEPLPNAPIRHGSKEIIANKTYGCRLCTETFRLKSDFRTHVIDAHSDAQKREVPGSNSCGYCNLEFEDGNERRRHFSNVECMVFLICGTCEEKFNSHPEYIDHVYATHIPTANATPIKQEFLLDDENGLLAEEPTPSSQSKARSPQNCTVCGKQYNNYYNVLRHMESKHPDQVPTTYRCDRCEIGYPRQVELREHMLRVHNERLKFDAIKMKREQFICRECKASFDTKDSWLTHQTEDHSKFCCNQCEEEIETKDDFLAHLATHSEAKSFKCPVCQHSFSSERGFETHLSVVHNMTKEEVADNNLDGSDFGEIAVECAVEINGENDTDNENINDAEDLDGNEADIDETIEHPAKRIKIDITEQEPNAPDSESSISTTCRICKETFKTRMLLMQHMRSSHSSVPKLPSLTASPHLAVQTHNVNNRLRCRICQKRIHTKNGYKRHMLTVHNVNNCVFIKCTLCPSEFSNDKGLKVHMFRTHNITVQQMQADESLVPIPKQESTSPTPTPVVPRVEPKQMFECNICHTVYRSRDQLKAHRSIVHSINDSDLNETDLIDTMIEDNTFAGESWWQCRFCNESFNASKKLTIHMNSHSEYDNKETKCKDCGNVYGTRKSLWVHRQKKHPRLPNPSPCELCDKTFFDKTELFYHLKTHSNDDVFSHLQAMQEQLEAEQESRQKQEQLGEGQENLSCHICSQRFHDKRVLSKHLRLHESQKQSESSFNNSALAAMLADTNISTDENLGEYSYPSYKGQNVENGDFACDMCPKKFSHVNALKVHRGWHFRSPDGRQITDSNSIWRPDVGGGGSNKNRRSRAANPPICPYCKSTFASGNNLRRHIVEVHKRNEAKMMRENGAETTFIEKECECQSCGITFNTRPEWVEHKISHARTMKPSTTYEWGCEICGKVFTRKERLLVHMTSHMNSQEEEINQRKAEMGFESNSQSSMSSLSQQQSQETNSLRNALQKNSGETKSSISLLKQPSLLKQSLQGKTLQQTQQSTSNDRKQHRNTESDASLDSDEEHSNEPEEEQNYNLKQNYSCDLCDLFFKTAKELRQHVKSHIESISGGPAEESNFDDEQYDGTEIEDQDDEDEQDEQSDQDEQDNQEDHYIEDSIDEEMGEEEMVEEDFEDEVDEDEQNEEGSSNVTGFNCRLCGSNSESHINMIKCMESHQMKMNTQCEQCQLYFMNNNQLETHEMLCHPQEDFDEDSD
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01288415;
- 90% Identity
- -
- 80% Identity
- -