Aaph003622.2
Basic Information
- Insect
- Aphidoletes aphidimyza
- Gene Symbol
- lrrfip2
- Assembly
- GCA_030463065.1
- Location
- CM059996.1:39431057-39434132[+]
Transcription Factor Domain
- TF Family
- LRRFIP
- Domain
- LRRFIP domain
- PFAM
- PF09738
- TF Group
- Unclassified Structure
- Description
- LRRFIP1 is a transcriptional repressor which preferentially binds to the GC-rich consensus sequence (5'- AGCCCCCGGCG-3') and may regulate expression of TNF, EGFR and PDGFA [1]. LRRFIP2 may function as activator of the canonical Wnt signalling pathway, in association with DVL3, upstream of CTNNB1/beta-catenin [2].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 3 0.38 3.7e+03 -3.0 0.5 249 267 20 38 5 69 0.51 2 3 4.8e-106 4.8e-102 341.4 35.6 1 299 163 450 163 451 0.94 3 3 0.024 2.3e+02 1.0 3.9 210 248 470 507 454 525 0.59
Sequence Information
- Coding Sequence
- ATGGACGAGTCTACATCAGAGCTATTGCTCAAGCAGCAAAAttataacaacaataatcgCAAATCGGAGAATACAGATGATGAGAatgtcaattcaattgattcgaatGAGCACAATAACAATGAATTATTTGACATTGATTCAAGTGATTTAGATTACGATAGTTCAGATATTGATCGAGATGAAATTAAAACGGTGCTGCAACAAACAATCGATAGAGAAtcgaaaaatgacaatgaGGATGTGTTAAACAGTAGCAATAACAACGATGTTTCAAATAGTTCCGTTGAAAACATTCCAACAGCACAAATTGAATGCCATTCCAATGAAATACACGttgataataatcaaaatgaaaacacaaacgaTATTCCAAAACCGGCAGATAACTGTTTACAAGATAATGAAACTGTTGCCGCCGCAACCGATGAACATGCTGAAGAGGGAGAGCCAATTTTCGACTTTTTGGGCAAAGCCAACGAAATCGCCGAAGCACGTCTGGCACAACGTCGACTTGCCCGAGCAGAGGCGCGCGACATTCGCATGCGTGAACTTGAACGTCAACAAAAGGAGCAAGAACAAAATGCAGATCGAGCCTTTGATATGCAGACAGCAGCTGGCTTAGATCCAACTGCACGTTCCACGCGTTTTGCCATGTCTTCAGCTGCATTGGGTTCATTACGTAGCGGTGCAATGTCGTCGCGACGCAGCAGCGAAGATTCATTAGAAGATGAAGGCCGTAGCCTTCGTGACATTAAACAAGAAATTAAGGACATGGAAGAGCGGTATCGAAAGGCAATGATTGCAAATGCACAGCTCGACAATGAACGTGCATCGAATacatatcaaattcaattgcttAAAGATAAAGTAGAAGAAATGGAAGAGATGCATGCCCAACTGCATCGTGAACACAAAGAGAAATGCCGTGAATTCGATACGctgaaacgaacaaacgaaaaattgatggAAGATTTAAGACTTGTTCAAGGCCAATTAAATGAACGTGACACATTGATAGCCAATGAAGGGTTGACGATAGTTTCCATTGAGAATGAGGATGGCTCGGACGCTAAACGGGCTCTAGTCAGTGCTGATAATGCACAATTATTAGAAACTCATCAAGGCTCTTTAGATGTACGGTTGAAAAAGTTCACTGAAGAAAAGCAGGCACTACGAGCCGAGATAGAGCAACTGCATCAACAATTAATCAGTGCAAAGACACAAAGGCGATCCGGATCGCAGAATGGGCCCATCGATGATGAGGATTATGAAGATGCACAAAGAGAGGCGAATAAATTAATAGCCGactttaaatataaattgacaAAAGCTGAACAGGAAATAGCAAGTTTACAGGCCAGCCTAGCACGATCGGAGACACAAGTCATTCGATACAAGAGTACGGCCGATGCCGCCGAAAAAGTTGAAGCCGAACTGAAAATTGAGAGAAGAAAGCTTCAACGTGAGaatcgagaaatgatggaaaaactAGAAGAACTGGAAACATCTCACAATCATTTACTAAAGCGTTTAGATAAGCTGAAGAATGCAAAGAGCACTCTACTCAAAGAATTATGA
- Protein Sequence
- MDESTSELLLKQQNYNNNNRKSENTDDENVNSIDSNEHNNNELFDIDSSDLDYDSSDIDRDEIKTVLQQTIDRESKNDNEDVLNSSNNNDVSNSSVENIPTAQIECHSNEIHVDNNQNENTNDIPKPADNCLQDNETVAAATDEHAEEGEPIFDFLGKANEIAEARLAQRRLARAEARDIRMRELERQQKEQEQNADRAFDMQTAAGLDPTARSTRFAMSSAALGSLRSGAMSSRRSSEDSLEDEGRSLRDIKQEIKDMEERYRKAMIANAQLDNERASNTYQIQLLKDKVEEMEEMHAQLHREHKEKCREFDTLKRTNEKLMEDLRLVQGQLNERDTLIANEGLTIVSIENEDGSDAKRALVSADNAQLLETHQGSLDVRLKKFTEEKQALRAEIEQLHQQLISAKTQRRSGSQNGPIDDEDYEDAQREANKLIADFKYKLTKAEQEIASLQASLARSETQVIRYKSTADAAEKVEAELKIERRKLQRENREMMEKLEELETSHNHLLKRLDKLKNAKSTLLKEL
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01288131;
- 90% Identity
- -
- 80% Identity
- -