Agif000531.1
Basic Information
- Insect
- Aphidius gifuensis
- Gene Symbol
- -
- Assembly
- GCA_014905175.1
- Location
- CM026525.1:7216185-7221234[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 20 0.76 67 3.6 6.4 2 23 241 263 240 263 0.97 2 20 0.014 1.2 9.1 2.0 1 23 348 370 348 370 0.97 3 20 0.049 4.4 7.4 0.6 1 23 419 441 419 441 0.98 4 20 0.11 9.5 6.3 0.9 1 20 508 527 508 529 0.91 5 20 3.7 3.2e+02 1.5 4.8 1 23 541 564 541 564 0.91 6 20 0.059 5.2 7.1 1.7 3 23 571 591 569 591 0.95 7 20 2.5e-05 0.0022 17.7 0.6 3 23 608 628 606 628 0.96 8 20 9.5e-06 0.00083 19.1 0.3 2 23 681 703 680 703 0.96 9 20 0.00042 0.037 13.9 1.2 1 23 709 732 709 732 0.95 10 20 0.042 3.7 7.6 0.7 2 23 744 766 743 766 0.86 11 20 3.5e-05 0.0031 17.3 0.9 3 23 776 796 774 796 0.92 12 20 0.0072 0.64 10.0 0.2 2 21 908 927 907 930 0.89 13 20 0.0075 0.66 10.0 0.2 2 23 945 966 944 966 0.97 14 20 0.00014 0.012 15.4 0.8 2 23 983 1004 982 1004 0.96 15 20 5e-05 0.0044 16.8 0.3 1 23 1025 1048 1025 1048 0.90 16 20 0.00023 0.02 14.7 0.8 2 23 1134 1156 1133 1156 0.94 17 20 2.8e-05 0.0025 17.6 1.4 2 23 1192 1214 1191 1214 0.95 18 20 0.14 13 5.9 0.7 1 23 1220 1244 1220 1244 0.95 19 20 0.06 5.3 7.1 0.4 1 23 1249 1272 1249 1272 0.91 20 20 0.24 21 5.2 0.0 2 23 1305 1327 1305 1327 0.93
Sequence Information
- Coding Sequence
- ATGGATGATATTGTCGAGTTggacaatattaaaaatgtttgtaGATTATGTTTATCTACTGATGAGccaaaaattgatatttttggtATCAAAGAATCATCACTACCATTTGATGAACTAATTCATCAGCATTTATTAATTgaggtTGCATCTGATGACAAATTGTCAACGCTAATTTGTGAAGGATGTATTGATAAAGTCAAAGATTGGCATATTTACAAGGAATCTTGTAAAAAATCACAggaaaaattacaacaatggcttgtaaaaaatatcagcaaTAACAGTTTAAAtatggaTCCCAGTGTAAAGGATGATACTAATGTAAAAAGTCCAGCTGAATTATCACAAGCAGATGTATCAGTTGAAGATATAATTCCAGaagaaatatcatcaattgaaaatgataGTACATTAAATACAACAATGGATGATGTATCAATGGAATCAATTGAAGAAGATTCACCagtaaaaaatgaagaattaaaaacacaaaaaaatacaaaagctgataaaattgaaataaagcGTGAACCacatgatgattatgataatattgatgttgaATCAGTTGCTGATagtgaattattaataaatccaATGGCAGgtgtaacaaataaaattattgagcCTGATTCaacacaaaaatttacaaaatctaaaaaaaaaatacgtcgTGGTTTACGTACACATTTTCGTGGTGTTagagcatttaaaaaaaaatgttcacaTTGTCAAGTTATATTACATtccaaattttcatataaaaatcatatgcAAAGATatcataatgatgataataatttaattgaaaatagtgataataacacaaaagaaattgaaactGGTAATTCAACTGAAGATGATGAATATTATGATGgtgaaaaacaacaagaacaacaacaacaacaaagtaatgaagatgatgaagtaATGGATGATGAAGAATCAATTGAAGATGTTGAAGATGAATTAatatcaatggaaaaaaatgcACCATTAACACAAgttcaagaaaatataataagtcaattaaaaacattttcatgTTATTCATGTCAACAAGTATTTAATGATCGTCGTAGTACATTAAATCATATACGACAACATATGCCTGATTTACGTCCATATACATGTATTGCATGTTTAACTGAATTTCCAGATcgttcaatatataaattacattgtgGTGCATCATTTGAATGTGCTATGAAAATAGCACTTGTAACTCCAAAACATGGtactgaaaaatattttacatgtaaTATGTGTTTACGTCCAATGCCAAATAGAAAAGATTTATTAACACATTTATCAAAACATTCTGATCGTCAATATGAACAATTAACAGCACCACAAAAAAcaccaattaaattaaaatcaacaacaacaacaacaacaactacaaatatagaaaaaacaaCACCTATGAATAATAGctctaataaaaaaacaaataataaattaataaatccatCATTGCTATTAGGACCATATCAAAATGGTGCTCCATCTCATAATcatacatgtatttattgtGGTAtgatttataaacataaaccAAATATGTTAAAACATCGTGAATTATGTCAACGTTTACCACCACATGAAAGAAATTCATATCATTGTGCTCATTGTggtttaacatttttaatatttaaaaaatttcaatcacATACTAATACTGAACATCGTCgtaaagaaataatatgttatttatgtggttcaaaatataaacatgcaCATGAATTTTTAGCACATTATCAAGAACATCGTGATTCAaagaatgataataaaaataataaaataataaaatatggttGTCCATTATGTCCAAAAGAATTTACAACACAAaatcaattacaacaacataAAACatcacatttaaaattaaaaaatacagataAACCATTgacaattgatgatgatttaaaattaattggtgaTTGTAGTATGCAACAAGAGCAACAAGAGcaaccacaacaacaagaTACACCAATATTTTCACCACCAAGTGGTGAACCTGGTTCAAGAAGTACTGAATGTCGTTCATGTGgtaaaatatttgcaaattaTCCAAATTTAAGAAGACACGTTAGAACAGCACATATTATTAATGGAAGATTTTGTTGTCCAAATTGTACAAAAACATTTACCAGTGAAGATTTATGGATACAACATGGACAACGTGCACATCCACGTGATATTGAAGcatcaacaatattaataacatgtcaacaatgtaaaaaagtatttaatgaTGCTGAACAACATTCACAACATTTAATTGAAGAACATGGTATTGATGAAGATGATCATTTAGCATGTGATATATGTGGTAAAAGATTTAGTAATGaaacatcattaaaaatacatcGTGGACATCATTTTAGACGTGATTCACGTTTAAGTATTAGAAATATACCAAATCCAATGGAACAAGTACAAGTTGAAATTGTTGAAGGaacaaatgaattaaatttgagtccaattaaaattgataaattaacatcaccatcatcaataagatcatcatcaccatcaaaagttaaaaaaaatttaatgcttgatagttttaatgatttatcaaatgatgataataatgacgaTGAAGATGAAAATGAAGGTGACGATGAtggaaataatattgatgatgatggtggtgatgacgttgatgatgatgaagcaaataatgatgatattgacAATTCAAAAAGTTTACAATGTActgtttgtaataataattttaatgacataCAAGATTTACGTAAACATTTAGTTGATGTACATTgtactgaaaataaaattgatgattcatttaATGAAGAATTACAATGTAATTTatgtacaaatatatttaatgatgaacAATCACTTGATGAACATATGAAATGGCATAAAGAagattcattattaaatgatgtTGTAAGAGCACCACCAGATATTATGTGTGATATTTgtggtaaatattattcatcaattaaatcattaacaaaacataaaaaattacataaaacaaattcagcaaatataaaatttacatcagTTAAAAAACCACCAATAACAGCATCATTTCCATGTCCAATatgtaaaaaagtatttaataatgaaaattcaatgaaaaaacataaagCTGGTGCACATTATGCTAGAAGAACAATTGCATCAATAGCTGcagctgctgctgctgctgcggcagcatcaacatcaacaacatcaccaTCAATACCATTATCAGTAGCAACACCATCACCaagaaaatcatcaacaaaaagtgATGACTCTGAAATACGTCCAAAAAGACCAAAActtgattttgatattattagaaAAGCATATAATTTAGGTGAACCATCTGGTAGTAGTGTTGGTACACCAAATACATCTAAAAAACCAGTAACATGTggtatttgtaaaaaattattcccaACAAAGAGTTCATTATATAAACATCGTTCAAATGTACataaaataacatcaaaatcaccagcaaaaaataaaacaactgatgataataatgatgataatggtgGTGGTGCTAGTGGCAGtgttgctgatgatgatgatggtgtacAATGTTctgattgttttaaaattttttcaaatagctCAAATATGAGACAACATTATACAAAAGTACATGGTAATGGTGAAAAACATTATTGTACAATTGATGATTGTAATGAAGAATTTGATACATCTGTTGCTAAacaattacatgaaaaaagtCATATGAGTATGTTATTTCAATGTAattattgtgataaaaatatgtttaatcGTGGAGCAATTGATAGTCATTTATTGACTGATCATTCATcaaatgttaatgatgataatcttaatgatgaaaaaaaacattttaaaaaagttgatttaGATGATTATGAAGTTAAAGGAGCTGATGGTCGTGTTTGTCCAGTTTGTCTTATTAAATATCCGAATATTAAAgcattgaaaattcattatgTTAAAATTCATGAAGGAAATACgtag
- Protein Sequence
- MDDIVELDNIKNVCRLCLSTDEPKIDIFGIKESSLPFDELIHQHLLIEVASDDKLSTLICEGCIDKVKDWHIYKESCKKSQEKLQQWLVKNISNNSLNMDPSVKDDTNVKSPAELSQADVSVEDIIPEEISSIENDSTLNTTMDDVSMESIEEDSPVKNEELKTQKNTKADKIEIKREPHDDYDNIDVESVADSELLINPMAGVTNKIIEPDSTQKFTKSKKKIRRGLRTHFRGVRAFKKKCSHCQVILHSKFSYKNHMQRYHNDDNNLIENSDNNTKEIETGNSTEDDEYYDGEKQQEQQQQQSNEDDEVMDDEESIEDVEDELISMEKNAPLTQVQENIISQLKTFSCYSCQQVFNDRRSTLNHIRQHMPDLRPYTCIACLTEFPDRSIYKLHCGASFECAMKIALVTPKHGTEKYFTCNMCLRPMPNRKDLLTHLSKHSDRQYEQLTAPQKTPIKLKSTTTTTTTTNIEKTTPMNNSSNKKTNNKLINPSLLLGPYQNGAPSHNHTCIYCGMIYKHKPNMLKHRELCQRLPPHERNSYHCAHCGLTFLIFKKFQSHTNTEHRRKEIICYLCGSKYKHAHEFLAHYQEHRDSKNDNKNNKIIKYGCPLCPKEFTTQNQLQQHKTSHLKLKNTDKPLTIDDDLKLIGDCSMQQEQQEQPQQQDTPIFSPPSGEPGSRSTECRSCGKIFANYPNLRRHVRTAHIINGRFCCPNCTKTFTSEDLWIQHGQRAHPRDIEASTILITCQQCKKVFNDAEQHSQHLIEEHGIDEDDHLACDICGKRFSNETSLKIHRGHHFRRDSRLSIRNIPNPMEQVQVEIVEGTNELNLSPIKIDKLTSPSSIRSSSPSKVKKNLMLDSFNDLSNDDNNDDEDENEGDDDGNNIDDDGGDDVDDDEANNDDIDNSKSLQCTVCNNNFNDIQDLRKHLVDVHCTENKIDDSFNEELQCNLCTNIFNDEQSLDEHMKWHKEDSLLNDVVRAPPDIMCDICGKYYSSIKSLTKHKKLHKTNSANIKFTSVKKPPITASFPCPICKKVFNNENSMKKHKAGAHYARRTIASIAAAAAAAAAASTSTTSPSIPLSVATPSPRKSSTKSDDSEIRPKRPKLDFDIIRKAYNLGEPSGSSVGTPNTSKKPVTCGICKKLFPTKSSLYKHRSNVHKITSKSPAKNKTTDDNNDDNGGGASGSVADDDDGVQCSDCFKIFSNSSNMRQHYTKVHGNGEKHYCTIDDCNEEFDTSVAKQLHEKSHMSMLFQCNYCDKNMFNRGAIDSHLLTDHSSNVNDDNLNDEKKHFKKVDLDDYEVKGADGRVCPVCLIKYPNIKALKIHYVKIHEGNT
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00131474;
- 90% Identity
- -
- 80% Identity
- -