Acol002526.1
Basic Information
- Insect
- Aphidius colemani
- Gene Symbol
- -
- Assembly
- GCA_030523065.1
- Location
- JAPYYR010000404.1:16541-21054[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 20 1.1 95 3.7 6.4 2 23 226 248 225 248 0.97 2 20 0.02 1.7 9.1 2.0 1 23 331 353 331 353 0.97 3 20 0.081 6.8 7.3 0.5 1 23 402 424 402 424 0.98 4 20 0.16 13 6.3 0.9 1 20 484 503 484 505 0.91 5 20 5.5 4.6e+02 1.5 4.8 1 23 517 540 517 540 0.91 6 20 0.026 2.2 8.8 1.4 3 23 547 567 545 567 0.95 7 20 4.3e-05 0.0036 17.6 0.4 3 23 584 604 582 604 0.96 8 20 1.4e-05 0.0012 19.1 0.3 2 23 659 681 658 681 0.96 9 20 0.00063 0.053 13.9 1.2 1 23 687 710 687 710 0.95 10 20 0.042 3.5 8.2 0.7 2 23 722 744 721 744 0.87 11 20 5.2e-05 0.0043 17.3 0.9 3 23 754 774 752 774 0.92 12 20 0.0016 0.14 12.6 0.3 2 21 882 901 881 904 0.89 13 20 0.019 1.6 9.2 0.1 2 23 919 940 918 940 0.96 14 20 0.0002 0.017 15.4 0.8 2 23 957 978 956 978 0.96 15 20 7.5e-05 0.0063 16.8 0.3 1 23 999 1022 999 1022 0.90 16 20 0.092 7.7 7.1 0.3 2 23 1110 1132 1109 1132 0.94 17 20 4.2e-05 0.0035 17.6 1.4 2 23 1167 1189 1166 1189 0.95 18 20 0.21 18 5.9 0.7 1 23 1195 1219 1195 1219 0.95 19 20 0.096 8 7.0 0.5 1 23 1224 1247 1224 1247 0.91 20 20 0.36 30 5.2 0.0 2 23 1280 1302 1280 1302 0.93
Sequence Information
- Coding Sequence
- ATGGATGATATTGTCGAGTTGGACAATATCAAAAATGTTTGTAGATTGTGTTTATCTACTGATGAGCCaaaagttgatatttttggtatcaaaaaatcatcaataccaTTTAATCAACTAATTCATCAGCATTTATTAATTgaggtTGCATCTGATGACAAATTGTCGACGCTAATTTGTGAAGAATGTATTAATAAAGTCAAAGAATGGCATATTTACAAGGAATCGTGTAAAACATCACAAGAAAAACTACAACAAtggcttGATCCCAGTGTAAAGGCTGATTCTGATGTAAAAACTCCAGCTGAACAAGCAGATATATCAGTTGAAGATATAATTCCAGAagaaatatcatcaattgagAATGATACATTAAATACAACAATGGATGATGTATCAATGGaatcaattgaagaaaattcaccagaaaaaaatgaattaaaatcacaaaataatgcaaaagctgataaaattgaaataaaacgtGAACCacatgatgattatgataatatCGATGTTGAATCAGTTGctgataatgaattattagtAAATCCAATGACAATTGTAGGAACTAAAATTATCGAGCCTGATTCAACACAAAAGTTtacaaaatctaaaaaaaaaatacgtcgtGGTTTACGTACACACTTTCGTGGTGTTAGagcattcaaaaaaaaatgttcacaTTGTCAAGTTATATTACATTccaaattttcatataaaaatcatatgcAACGatatcataatgataatagtttaattgaaaattgtgataataacACAAAAGGAATTGAAACTGGTAATTCAACTGAAGATGATGAATATTATGATGgtgaaaaacaacaacaaaaacaacaacaaagtaATGAAGATGATTCGGTCATAGATGATGAAGAATCAATTGAAGATGTTGAAGATGAATTAatatcaatggaaaaaaatgcaCCATTAACACAAgttcaagaaaatataataagtcaattaaaaacattttcatgtTATTCATGTCAACAAGTATTTAATGATCGCCGTAGTACATTAAATCATATACGACAACATATGCCCGATTTGCGTCCATATACATGTATTGCATGTTTAACTGAATTTCCAGATcgttcaatatataaattacattgtgGTGCATCATTTGAATGTGCTATGAAAATAGCACTTGTAACTCCAAAACATGgtactgaaaaatattttacatgtaaTATGTGTTTACGTCCAATGCCAAATAGAAAAGATTTATTATCACATTTATCAAAACATTCTGATCGTCAATACGAACAATTAACAGCACCACAAAAAAcaccaattaaattaaaaccaacaacaaatatacaaacaacatcagtgaataataataataataataaaacatataataaattgataaatcaatcatTGCTATTAGCACCATATAAAAATGGTGCTCCAACTCATAATCatacatgtatttattgtggtatgatttataaacataaaccAAATATGTTAAAACATCGTGAATTATGTCAACGTTTACCACCACATGAAAGAAATTCATATCATTGTGCTCATTGtggtttaacatttttaatatttaaaaaatttcaatcacATACTAACACTGAACATCGTCgtaaagaaataatatgtTATATATGTGgttcaaaatataaacatgCACATGAATTTTTAGCACATTATCAAGAACATCGTGATTCAaataatgatgttaaaaataataaagtaataaaatatggTTGTCCATTGTGTCCAAAAGAATTTACAACACAAAATGACTTACAACAACATAAAACatcacatttaaaattaaaaaatacagataAACCTTtgacaattgatgatgatttaaaattaattggtgATTGTAGTATGCAACAAGAGCAACAAGaagaagaacaacaacaacaacaagatacACTATTATTTTCACCACCAAGTGGTGAACCTGGTTCAAGAAGTACTGAATGTCGTTCATGTGGtaaaatatttgcaaattaTCCAAATTTAAGAAGACACGTTAGAACAGCACATATTGTTAATGGAAGATTTTGTTGTCCAAATTGTACAAAAACATTTACCAGTGAAGATTTATGGATACAACATGGACAACGTGCACATCCACGTGATATTGAAgcatcaacaatattaataacatgtcaacaatgtaaaaaagtatttaatgaTGCTGATCAACATTCACAACATTTAATTGAAGAACATGGTATTGATGAAGACGATCACTTAGCATGTGATATATGTGGTAAAAGATTTAGTAATGaaacatcattaaaaatacatcGTGGACATCATTTTAGACGTGATTCACGTTTAAGTATTAGAAATATACCAAATCCAATGGAACAAGTACAAGTTGAAATTCTTGAGGgaacaaatgaattaaatttgagTCCAATTaaatcaccatcatcaataagatcatcatcaccatcaaaagttaaaaaaaatttaatgattaatagttttaatgatttatcaaatgataataatgatgatgatgaagatgaagacgatgatatgaataatattgatgatggtgttagtggtggtggtggtgatgacgttgatgatgatgaagctaataatgatgatattgacaACTTAAAAAGTTTACAATGTACTGTttgtaataatacttttaagGACATACAAGATTTACGTAAACATTTAGTAGATGTACATTGTACTgggaataaaattgatgattcatttgataatgaatTACAATGTAATTTATGTACAGatgtatttgatgatgaacaaTCACTTGAAGACCATATTAAATGGCACAAAGAAGATTCATTAACAAATGATGTTGTAAGACCACCACCAGATATCATGTGTGATATTTGTGGTAagtattattcatcaattaaatcattaacaaaacataaaaaattacataaaacaaattcagcaaatgtaaaatttacatCAGTTAAAAAACCACCAATAACAGCATCATTTCCATGTCCAATatgtaaaaaagtatttaataatgaaaattcaatgaaaaaacataaagCGGGTGCACATTATGCCAGAAGAACAATTGCATCAATAgctgcagcagcagcagcagcagcagctgcTGCGGCAGCATCAACATCAGCGTCACCATCAATGCCATTATCAGTAGCAACACCATCaccaaaaaaatcatcatcaaagaGTGATGACTCTGAAATACGTCCTAAAAGACCAAAACttgattttgatattattagaAAAGCATATAATTTAGGTGAACCATCTGGTAGTAGTGTTGGTACACCAAATGCATCTAAAAAAGCTGTAACATGtggtatttgtaaaaaattattaccaacAATGAGTTCATTATATAAACATCGTTCAAATGTacataaaataacatcaaaatctccaataaaaaatgaaacaactgatgataataatgatgataatggtacTGCTGGTGGgagtgttgatgatgatgatgatggtgtacAATGTTctgattgttttaaaattttttcaaatagttcAAATATGAGACAACATTATACAAAAGTACATGGTAATGGTGAAAAACATTATTGTACAATCGATGATTGTAATGAAGAATTTGATACATCAGTTGCTAAacaattacatgaaaaaagtCATATGAGTATGTTATTTCAATGtaattattgtgataaatttatgtttaatcgTGGAGCAATTGATAGTCATTTATTGACTGATCATTCATCAaatgttaatgatgatgatcttaatgatgaaaaaaaacattttaaaaaagttgatttaGGTGATTATGAAGTTAAAGGAGCTGATGGTCGTGTTTGTCCAGTTTGTCTTATCAAATATCCCAATATAAAagcattgaaaattcattatgtTAAAATTCATGAAGGAAATAcgtag
- Protein Sequence
- MDDIVELDNIKNVCRLCLSTDEPKVDIFGIKKSSIPFNQLIHQHLLIEVASDDKLSTLICEECINKVKEWHIYKESCKTSQEKLQQWLDPSVKADSDVKTPAEQADISVEDIIPEEISSIENDTLNTTMDDVSMESIEENSPEKNELKSQNNAKADKIEIKREPHDDYDNIDVESVADNELLVNPMTIVGTKIIEPDSTQKFTKSKKKIRRGLRTHFRGVRAFKKKCSHCQVILHSKFSYKNHMQRYHNDNSLIENCDNNTKGIETGNSTEDDEYYDGEKQQQKQQQSNEDDSVIDDEESIEDVEDELISMEKNAPLTQVQENIISQLKTFSCYSCQQVFNDRRSTLNHIRQHMPDLRPYTCIACLTEFPDRSIYKLHCGASFECAMKIALVTPKHGTEKYFTCNMCLRPMPNRKDLLSHLSKHSDRQYEQLTAPQKTPIKLKPTTNIQTTSVNNNNNNKTYNKLINQSLLLAPYKNGAPTHNHTCIYCGMIYKHKPNMLKHRELCQRLPPHERNSYHCAHCGLTFLIFKKFQSHTNTEHRRKEIICYICGSKYKHAHEFLAHYQEHRDSNNDVKNNKVIKYGCPLCPKEFTTQNDLQQHKTSHLKLKNTDKPLTIDDDLKLIGDCSMQQEQQEEEQQQQQDTLLFSPPSGEPGSRSTECRSCGKIFANYPNLRRHVRTAHIVNGRFCCPNCTKTFTSEDLWIQHGQRAHPRDIEASTILITCQQCKKVFNDADQHSQHLIEEHGIDEDDHLACDICGKRFSNETSLKIHRGHHFRRDSRLSIRNIPNPMEQVQVEILEGTNELNLSPIKSPSSIRSSSPSKVKKNLMINSFNDLSNDNNDDDEDEDDDMNNIDDGVSGGGGDDVDDDEANNDDIDNLKSLQCTVCNNTFKDIQDLRKHLVDVHCTGNKIDDSFDNELQCNLCTDVFDDEQSLEDHIKWHKEDSLTNDVVRPPPDIMCDICGKYYSSIKSLTKHKKLHKTNSANVKFTSVKKPPITASFPCPICKKVFNNENSMKKHKAGAHYARRTIASIAAAAAAAAAAAAASTSASPSMPLSVATPSPKKSSSKSDDSEIRPKRPKLDFDIIRKAYNLGEPSGSSVGTPNASKKAVTCGICKKLLPTMSSLYKHRSNVHKITSKSPIKNETTDDNNDDNGTAGGSVDDDDDGVQCSDCFKIFSNSSNMRQHYTKVHGNGEKHYCTIDDCNEEFDTSVAKQLHEKSHMSMLFQCNYCDKFMFNRGAIDSHLLTDHSSNVNDDDLNDEKKHFKKVDLGDYEVKGADGRVCPVCLIKYPNIKALKIHYVKIHEGNT
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00132775;
- 90% Identity
- -
- 80% Identity
- -