Agif000911.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Aphidius gifuensis
Gene Symbol
RpL9
Assembly
GCA_014905175.1
Location
CM026525.1:482530-494014[-]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 28 5.5e-06 0.00048 19.8 0.8 1 23 218 240 218 240 0.98
2 28 0.0018 0.15 11.9 1.9 1 23 264 287 264 287 0.96
3 28 0.0016 0.14 12.1 0.8 2 23 294 316 293 316 0.96
4 28 4.3e-05 0.0038 17.0 0.6 1 23 434 457 434 457 0.96
5 28 7.7e-05 0.0068 16.2 0.1 1 23 531 554 531 554 0.96
6 28 0.0026 0.23 11.4 0.5 1 23 560 583 560 583 0.96
7 28 0.078 6.9 6.7 1.5 1 23 596 618 596 618 0.97
8 28 1.5e-05 0.0013 18.4 2.4 3 23 664 685 662 685 0.96
9 28 0.075 6.6 6.8 1.8 2 23 752 775 751 775 0.94
10 28 2 1.8e+02 2.3 0.0 2 23 784 806 784 806 0.84
11 28 0.011 0.99 9.4 0.1 2 23 813 835 812 835 0.95
12 28 8.5e-06 0.00075 19.2 1.2 1 23 843 865 843 865 0.98
13 28 0.0013 0.12 12.3 1.3 2 23 913 936 912 936 0.94
14 28 2.7e-05 0.0024 17.6 2.3 1 23 939 962 939 962 0.97
15 28 0.0028 0.25 11.3 0.7 2 23 969 991 968 991 0.95
16 28 0.0021 0.19 11.7 5.1 1 21 1031 1051 1031 1052 0.95
17 28 0.0018 0.15 11.9 1.8 2 23 1066 1087 1065 1088 0.93
18 28 0.24 22 5.2 1.1 1 23 1091 1114 1091 1114 0.94
19 28 0.0095 0.84 9.6 1.6 2 23 1121 1142 1120 1142 0.95
20 28 0.84 74 3.5 0.2 2 23 1150 1172 1150 1172 0.95
21 28 2.4 2.1e+02 2.1 0.0 2 23 1179 1201 1178 1201 0.87
22 28 0.15 13 5.9 2.7 2 23 1210 1232 1210 1232 0.96
23 28 1.3 1.1e+02 2.9 0.2 2 23 1238 1260 1238 1260 0.92
24 28 0.28 25 5.0 0.3 1 23 1319 1342 1319 1342 0.94
25 28 0.00021 0.019 14.8 0.8 1 21 1365 1385 1365 1386 0.96
26 28 0.32 28 4.8 1.3 2 23 1515 1537 1514 1537 0.93
27 28 0.45 40 4.3 2.5 1 23 1577 1599 1577 1599 0.97
28 28 0.49 43 4.2 0.1 3 20 1608 1625 1608 1627 0.93

Sequence Information

Coding Sequence
ATGGATACCAGGGAAAAGTACGATGAATTGTGCAGGCTATGTGCCTCGTACGACGCcgttaaaatgaatatatttggTCAGGACGGAAAAAATCGACAATTAGTTGATAAAATACAAACTTGTCTTCCATTCAAGattAATGAAGATGATCGATTACCAAAATGTTTGTGCTACAGATGTATGTAcaatttggaaaatttttatgactTTAGAACAGCATGTGTTAATGCTGTTGCATTACTTGAACGTAGTCTTCCATCAAATGATTCcaaaaaTGGAGGAAGAAATGGTATAGATATGGAAAAATGTTTTGAGCTACGTACAGAGctattgaaagaaaaagaaaaaatgccAATATTAATACCAGAAGCACCAGTTGTTAATCCAAATGCTGCCCTAGGTACACCACCAAGATTAAATTCCGATGGTGAAGCAATACATGATTTAGAAATGGGACAATCAAGTACTGATGATTGTCAATATTATctagatgataataatcataataacaaATCAGATGAATATGAAATGGATATTGAATTAAATCCATCTGATTTTCTTGACATGATAACAGACATGGAATCGTCAAATCAAATTGACCAAATATCATCACATGATGTATTTAAACATACATCAGAACAACATGAAGTTTATGTATGTTCATTGTGTGATAAAGCATTTAGTTCAAAGGGACATTTATCATTACATGCTAAAATTCATGTTGGTGCTGAAAATGATGTTGTAGGAGAAAAAGTTATAACTGATGATCATACATCATACAAACGACCCTATCAATGTGATTTATGTAATAAATCATATTCAACAGCTAAACACAGATGGGGTCATGTATCAACAACACATCGTGGTCATCCAGCAGTAACATGTCGTTTTTGTTCACGTATTTACTCAacaagaattaatttagaagaACATATTAAATCAAGACACACTGGTTTATCAGCACCACCTGAACCACCTGGACCATATATACAACAAGATACACGttttcaatgtaaaaaatgtccaaaatGTAAATGTTTAATGGATGCATCAGACGACATGTCAAGTAATGAATCAGATGATTATAGTCGTGAATATCGTAATGCTGAAgctaaattatctaaaaatccACAATTAACAATACTTAAACAAGCATTAacacgtaataataataataacaataatgaagGTATTAATAaacgtttaaaaattaaagataaaaagaaattaataattaaaaaagaaatgattgATGGTGGTGGTTATTCAAAAgagtatgaaaaaatacaagaaaaaccATATATTTGTACATTATGTAAAAAagattttgttgttaaatcatcattaaGTAGACATATATTATCATCACATGGTATTGATCCATCAccatttattgaaaatgataaatgtcttaaaaaattattattaatgccaacagcaacaaataataatattaaaagtgaACCATTAGAAATTAATTCTATAAATCAAGAAGATGAAAATGATGAGAATGATGATGAggaagaacaacaacaacaacaacatgatgatgaaacaataaatgataatcatattgaaattgaaacaGTATTTGTTTGTGAAATATGTACACGTGATTTTAATGATCGTGCATCATTATGGTTACATATACGTGCAACACACAAAGAATATGCTGCATTTGCATGTggtatttgtttaaaaatatgttcagataatgaacaattattaaatcatgtTAATATGTATCATGGTGGATCAAAATTATTAGTATCTGAACAAAGACGTTATAGTTGTACAATATGTGGTAGACAGCATGattctagaaaaaaattaataacacatGTGTCAATACATAATATTGATTCATCATATGATCCAGCTAATTTTGTACAgcttaattcaaattattacaGTGATAATATaccaataataaatgatgGACAAGAACAATGGACTGATTTTGATGCTGAAGATGgtgaaaaagtaaattgtCATGTTTGTTTTAAATCATTTCCAAATGAAGATCATTTAATACGTCATCAACGTAATGCACATAAAACagatcaattaataaatgatacaacagcaacattatcaacaacaccatcatcatcatcaacaacaacaacaacaaatggtACAAAAGGaccatataatttattttatgtttgtgAATTATGTGGTAGTTCACATCCAAGTAAATGGGAACGTTGGCTTCATGTATCAAATACTCATTATGATGATGCAACAATAAAATGTGAACGTACTGATTGTgccaaaatattttcaacaaaatcattaaaaaatgatcatgTACAACATCATGCAATGCAGGGACCATCACCAAATACATGTGAAATATGTGGTAAATTATGGGGAAGTAGAGTTGATTATTGGAAACATGTTATGGGTGTACATGCTGATACAGTACCATTAATATGTGGTGTTTGTTTAAAAGTATTTCCTGATGTTTATCAACTTAGTttacatgttaaaaaaaatcattggcCATTGACAAATGGTGATTTTAGTTGTGATATTTGTGGTCGTccatattcaaataaatcaaaaatgtcACGTCACAGAAAAATACATggtattgttgataatgatttgatgatgatgacgacaacaatgacaacaacaacaacaaatggtatgtcattattaaatcaaataaataatgatgatgataataatattatgatgaatgataatatacaagattataatttaacatgtGAAATATGTACagataaaagttttataaattgggATGATTTATGTAATCATCGTAGATTAACACATGGTTTATTTCCATGTGATTTGTGTAATAAATGTTATGGTAGAGCATCACATCTTTGGAAGCATGTTAATAGAGTACACAAAGGACATAGTGATGTAACATGTcgttattgtttaaaaacaaGTGCATCAAAAGATCATCTTGCTGCTCATATTGCTAAAACTCATCGTTATGAACCAgatgaaaaacaacaattaattaataattacattaataGTAAAACAAGTGGTGgtagtagtggtggtggtggtggtgttggtgttggtggtgatgatgatgttattcATCATTgtgaaaaatgtaataaagGTTTTcataaaagatatttattaCGTAGACATATGAAAGGTTGTCAAAATTATCGTAAAGATCCTGGTGCATTATTAACACGTTGTCGTGCATGTGaaagaatatttaaagatCGTGCAAGTTTACAAAAACACATTGAAAATCATCACAGTAGTTATACATGTCATTTGTGTAATGAAACAATAACATCAAAACTTGGTATTATGACACACAATAGAATTAATCATATGAATCATGATGATTTAACATGTACatcatgtaaaaaattatttagaacaaAAGAAGATCTTGATGTTCATAAAAAAGAtcataaatatcataattcattaaatgttTGTGATTTTTGTGGTGATACTGTTGAGAGTaagctaaaattaaaaatgcataTACTTAGTTTACATAGAAATGAAATTGGTGTATCATGTGGTGTATGTTTAATTCCAATGAAAGATCCaaaggatttaaaaaaacacgTTGAGGATGAACATCCTGGTATATTATCACGACCAAATACATGTCAAGTTTGTGGTAAACAATATGCATCAAAATGGAAAGCATTTGATCACACTAAAAAATGTCATGGTAAAGTATTTAGAACATGTAAACAATGTTTAGCTGTATTTAcaagtgatgatgatattagaTATCACTATGAATACATTCACAATGTAACTAAAGAACAACTTGCTAATATTGAAAGTAGTTATGATAATTCATCTAAAATTGATGATCAATCAATTGACATTGATTACTtggattatgatgatgatgatgatgataataattcattattatacaataatagtttttcaacaacaaaacgCAAAAGATCAGAGTCACATGAGTGTGATATTTGTTATGAATTATTTGCAAATGACGATGAATTTGGTCAACATTATCGTGATGTACATAATAAAGATCCAGATaagatgtttaaaaaaattaaatccaagaaaaaatctaaaaatcgTGATAATTATGAATGTAAAAGTTGTACAAAACAATTTAGTACAAGATCATTGTATTGGAAtcacataaaaatatgtacaaataaatatttaaaagatgatTTAGAAAGTGGCAATTCAATGTCGATACTTGAATCacatcttaaaaataataatcaattaaaaatacaacaacaacaacaacaacaatatgataataataatgatgattttactGATGCAGCTGCTGGTGCTggtgctgctgctgttgttgatgatgatgataataatgatgtaaTGAATGATATGAGTTTAAATATAcctgattttaatttatttgaagataTTAATATGCAATTATCTGGACAAAAACCTTTGCCACCATTGATGCCACTGACAACAGTAAAAAATCCACAGCCAACAAAATGTTATCGTAAAGATTCAAGAAAAGTTTATGATGAATCAACAAATACTGTGTGTGCTTGTGAAGTATGTGGTAAACAATGGCCAgctaaaaaacatttatggCAACATTTAATTAGATTTCATCGTGCTGAAGCTGCTGTAACATGTGGTGTTTGTTTGAAATTATGTAAaacatattttgatttatcatgtCATTTAAAAGAAGCACATGAAGCTATATTAAGCTGTGaaggaaataattttacatgtaaAACTTGTGGTAGATATCACAATGCAAGAAGTAAATTATTACTTCATATGAgtattcatattaataataatgaacatATTTGGTGTATGAAATGTGCTGTTAGTTTTGAAAatcaagataaattaaatgaacatgctaataattgtattgtTAAACGTCGTGAAGAAGCTGATGTTGGGGAccaaattatagaaaaaaataatattaaacatgaaaatgaagaacaagaagaagaacaacaacaacaacaacaaaataaaaaagcagaAGAGCACGAAGAACAACAAGAACAagtagaagaagaagaagaagaaggagAATATGATGATAAAGGTAGTTTAATTGGTGATGGTGCTTCATTGATGGAAGAAGTTGGTGAAGAAGCTGATTTTGAAAGTGAACATGAAGCATTTGAAGATAatggtgaaaataatactGAACAAAGTGAACATTCACAACACTCTGAAGATTCTGATAGCAGTAGCAGTAGTAGTAGCAGTAATAGTAGTGTTGCAGCATCAGCCagtgaagatgaagaagaagaagaagccGAGGCCAATGCCAAAGATACAACAAAATGCTctgatgttattattaaagagCATGAAAgtcatgatgataaatcaaatatttcaattgatattaaaccagttataaataatgattcatcaacaagtcaaaaaaataaaaatgatgatgaaaaattattaaacactGTTGATGTAATTGAGcctattaatattaaatgtgaaaaaaattctaataatgaagaaaaaccATTAATATCAAGTGAATCTTCTCCAAAGccagatgataatgataataataattatgataaaataaaacaagataaagatgaagaagaaaatgaaaatgaagaagaagacgaagaagaagaagagatGGCAATTGATTCAGAGCATGATGAAAGTGTCGAACAAGATGAAcaaaatgaagaagaaaatgaaggtgaagatgatgatgatcaagtagaagaagaagaagaagaagaagaacaagAAGACGAGGCGGAGGAGGAAGAAGATATATATCCAGAAGTAAATCATGAAGGTTTAGAAGGCATAAAAGATATTGATTATGAACAATCATCTCCTGATAAATCACACGATGAAATTGAatctgataatgaaaataatgaagaagagGAGGGGGTATTTGTAACTGAGCATGAAGATGAAATGCAAATTGAAAATCTTGATGGTACTatCTTCATCATGAAGCAAATTGTTTGTGAACAGACTGTCAAAGTCCCAGAGGGATTGACTGTTACAGTCAAATCTCGTTTGGTGACTGTTAAAGGACCCCGAGGTGTCCTCAAGAGATCCTTCAAGCACTTGGCTCTTGACATTAAAATGGTTGGTCCAAGAACCTTGAAAGTCCAAAAATGGTTTGGAACTAAAAAAGAGTTGGCTGCTGTAAGAACAGTTTGTTCTCACATTGAAAATATGTTAAAGGGAGTCACCAAGGGATTCCTTTACAAGATGAGAGCAGTATATGCCCATTTCCCAATTAATTGTGTTGCCACTGAAAACAACACAGTTATTGAAATTAGAAATTTCCTTGGAGAGAAGTACATTCGTCGTGTTAAAATGTCACCAGGTGTTACTGTATCAAACTCAACTCAACAAAAGGAAGAGTTAATTATTCAAGGTAACTCACTTGAAGATGTCTCAAGATCAGCAGCCCTCATTCAACAGTCAACAACTGTTAAAAATAAGGATATCAGAAAGTTTTTGGATGGATTATATGTATCACAAAAAACAACTGTTGTCCAAGATGATGattaa
Protein Sequence
MDTREKYDELCRLCASYDAVKMNIFGQDGKNRQLVDKIQTCLPFKINEDDRLPKCLCYRCMYNLENFYDFRTACVNAVALLERSLPSNDSKNGGRNGIDMEKCFELRTELLKEKEKMPILIPEAPVVNPNAALGTPPRLNSDGEAIHDLEMGQSSTDDCQYYLDDNNHNNKSDEYEMDIELNPSDFLDMITDMESSNQIDQISSHDVFKHTSEQHEVYVCSLCDKAFSSKGHLSLHAKIHVGAENDVVGEKVITDDHTSYKRPYQCDLCNKSYSTAKHRWGHVSTTHRGHPAVTCRFCSRIYSTRINLEEHIKSRHTGLSAPPEPPGPYIQQDTRFQCKKCPKCKCLMDASDDMSSNESDDYSREYRNAEAKLSKNPQLTILKQALTRNNNNNNNEGINKRLKIKDKKKLIIKKEMIDGGGYSKEYEKIQEKPYICTLCKKDFVVKSSLSRHILSSHGIDPSPFIENDKCLKKLLLMPTATNNNIKSEPLEINSINQEDENDENDDEEEQQQQQHDDETINDNHIEIETVFVCEICTRDFNDRASLWLHIRATHKEYAAFACGICLKICSDNEQLLNHVNMYHGGSKLLVSEQRRYSCTICGRQHDSRKKLITHVSIHNIDSSYDPANFVQLNSNYYSDNIPIINDGQEQWTDFDAEDGEKVNCHVCFKSFPNEDHLIRHQRNAHKTDQLINDTTATLSTTPSSSSTTTTTNGTKGPYNLFYVCELCGSSHPSKWERWLHVSNTHYDDATIKCERTDCAKIFSTKSLKNDHVQHHAMQGPSPNTCEICGKLWGSRVDYWKHVMGVHADTVPLICGVCLKVFPDVYQLSLHVKKNHWPLTNGDFSCDICGRPYSNKSKMSRHRKIHGIVDNDLMMMTTTMTTTTTNGMSLLNQINNDDDNNIMMNDNIQDYNLTCEICTDKSFINWDDLCNHRRLTHGLFPCDLCNKCYGRASHLWKHVNRVHKGHSDVTCRYCLKTSASKDHLAAHIAKTHRYEPDEKQQLINNYINSKTSGGSSGGGGGVGVGGDDDVIHHCEKCNKGFHKRYLLRRHMKGCQNYRKDPGALLTRCRACERIFKDRASLQKHIENHHSSYTCHLCNETITSKLGIMTHNRINHMNHDDLTCTSCKKLFRTKEDLDVHKKDHKYHNSLNVCDFCGDTVESKLKLKMHILSLHRNEIGVSCGVCLIPMKDPKDLKKHVEDEHPGILSRPNTCQVCGKQYASKWKAFDHTKKCHGKVFRTCKQCLAVFTSDDDIRYHYEYIHNVTKEQLANIESSYDNSSKIDDQSIDIDYLDYDDDDDDNNSLLYNNSFSTTKRKRSESHECDICYELFANDDEFGQHYRDVHNKDPDKMFKKIKSKKKSKNRDNYECKSCTKQFSTRSLYWNHIKICTNKYLKDDLESGNSMSILESHLKNNNQLKIQQQQQQQYDNNNDDFTDAAAGAGAAAVVDDDDNNDVMNDMSLNIPDFNLFEDINMQLSGQKPLPPLMPLTTVKNPQPTKCYRKDSRKVYDESTNTVCACEVCGKQWPAKKHLWQHLIRFHRAEAAVTCGVCLKLCKTYFDLSCHLKEAHEAILSCEGNNFTCKTCGRYHNARSKLLLHMSIHINNNEHIWCMKCAVSFENQDKLNEHANNCIVKRREEADVGDQIIEKNNIKHENEEQEEEQQQQQQNKKAEEHEEQQEQVEEEEEEGEYDDKGSLIGDGASLMEEVGEEADFESEHEAFEDNGENNTEQSEHSQHSEDSDSSSSSSSSNSSVAASASEDEEEEEAEANAKDTTKCSDVIIKEHESHDDKSNISIDIKPVINNDSSTSQKNKNDDEKLLNTVDVIEPINIKCEKNSNNEEKPLISSESSPKPDDNDNNNYDKIKQDKDEEENENEEEDEEEEEMAIDSEHDESVEQDEQNEEENEGEDDDDQVEEEEEEEEQEDEAEEEEDIYPEVNHEGLEGIKDIDYEQSSPDKSHDEIESDNENNEEEEGVFVTEHEDEMQIENLDGTIFIMKQIVCEQTVKVPEGLTVTVKSRLVTVKGPRGVLKRSFKHLALDIKMVGPRTLKVQKWFGTKKELAAVRTVCSHIENMLKGVTKGFLYKMRAVYAHFPINCVATENNTVIEIRNFLGEKYIRRVKMSPGVTVSNSTQQKEELIIQGNSLEDVSRSAALIQQSTTVKNKDIRKFLDGLYVSQKTTVVQDDD

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
iTF_00132142;
90% Identity
iTF_00132759;
80% Identity
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