Agif001490.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Aphidius gifuensis
Gene Symbol
RpL9
Assembly
GCA_014905175.1
Location
CM026525.1:542833-551719[-]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 28 5.3e-06 0.00046 19.9 0.8 1 23 102 124 102 124 0.98
2 28 0.0017 0.15 12.0 1.9 1 23 148 171 148 171 0.96
3 28 0.0015 0.13 12.1 0.8 2 23 178 200 177 200 0.96
4 28 0.00012 0.01 15.6 0.7 1 21 220 240 220 241 0.95
5 28 4.1e-05 0.0036 17.1 0.6 1 23 359 382 359 382 0.96
6 28 7.4e-05 0.0065 16.3 0.1 1 23 456 479 456 479 0.96
7 28 0.0025 0.22 11.4 0.5 1 23 485 508 485 508 0.96
8 28 0.075 6.6 6.8 1.5 1 23 521 543 521 543 0.97
9 28 1.5e-05 0.0013 18.5 2.4 3 23 589 610 587 610 0.96
10 28 0.072 6.3 6.9 1.8 2 23 677 700 676 700 0.94
11 28 1.9 1.7e+02 2.3 0.0 2 23 709 731 709 731 0.84
12 28 0.012 1.1 9.3 0.0 2 23 738 759 737 759 0.95
13 28 8.1e-06 0.00072 19.3 1.2 1 23 767 789 767 789 0.98
14 28 0.0013 0.11 12.3 1.3 2 23 837 860 836 860 0.94
15 28 2.6e-05 0.0023 17.7 2.3 1 23 863 886 863 886 0.97
16 28 0.0027 0.24 11.4 0.7 2 23 893 915 892 915 0.95
17 28 0.002 0.18 11.7 5.1 1 21 952 972 952 973 0.95
18 28 0.0017 0.15 12.0 1.8 2 23 987 1008 986 1009 0.93
19 28 0.24 21 5.2 1.1 1 23 1012 1035 1012 1035 0.94
20 28 0.0091 0.81 9.7 1.6 2 23 1042 1063 1041 1063 0.95
21 28 2.3 2e+02 2.1 0.0 2 23 1099 1121 1098 1121 0.87
22 28 0.14 12 5.9 2.7 2 23 1130 1152 1130 1152 0.96
23 28 1.2 1.1e+02 3.0 0.2 2 23 1158 1180 1158 1180 0.92
24 28 0.27 24 5.1 0.3 1 23 1238 1261 1238 1261 0.94
25 28 0.0002 0.018 14.9 0.8 1 21 1284 1304 1284 1305 0.96
26 28 0.31 27 4.9 1.3 2 23 1433 1455 1432 1455 0.93
27 28 0.43 38 4.4 2.5 1 23 1495 1517 1495 1517 0.97
28 28 0.47 41 4.3 0.1 3 20 1526 1543 1526 1545 0.93

Sequence Information

Coding Sequence
atgccAATATTAATACCAGAAGCACCAGTTGTTAATCCAAATGCTGCCCTAGGTACACCACCAAGATTAAATTCCGATGGTGAAGCAATACATGATTTAGAAATGGGACAATCAAGTACTGATGATTGTCAATATTATctagatgataataatcataataacaaATCAGATGAATATGAAATGGATATTGAATTAAATCCATCTGATTTTCTTGACATGATAACAGACATGGAATCGTCAAATCAAATTGACCAAATATCATCACATGATGTATTTAAACATACATCAGAACAACATGAAGTTTATGTATGTTCATTGTGTGATAAAGCATTTAGTTCAAAGGGACATTTATCATTACATGCTAAAATTCATGTTGGTGCTGAAAATGATGTTGTAGGAGAAAAAGTTATAACTGATGATCATACATCATACAAACGACCCTATCAATGTGATTTATGTAATAAATCATATTCAACAGCTAAACACAGATGGGGTCATGTATCAACAACACATCGTGGTCATCCAGCAGTAACATGTCGTTTTTGTTCACGTATTTACTCAacaagaattaatttagaagaACATATTAAATCAAGACACACTGGTTTATCAGCACCACCTGAACCACCTGGACCATATATACAACAAGATACACGttttcaatgtaaaaaatgtccaaaaatgtatacaaatataactgatttaaataaacacaGTCGTGTATGtattgttggtggtggtgttggtaaTGAAcgtactaaaaataaaaataaaaataatcataataataaattaccaataaaAGGTAAATGTTTAATGGATGCATCAGACGACATGTCAAGTAATGAATCAGATGATTATAGTCGTGAATATCGTAATGCTGAAgctaaattatctaaaaatccACAATTAACAATACTTAAACAAGCATTAacacgtaataataataataacaataatgaagGTATTAATAaacgtttaaaaattaaagataaaaagaaattaataattaaaaaagaaatgattgATGGTGGTGGTTATTCAAAAgagtatgaaaaaatacaagaaaaaccATATATTTGTACATTATGTAAAAAagattttgttgttaaatcatcattaaGTAGACATATATTATCATCACATGGTATTGATCCATCAccatttattgaaaatgataaatgtcttaaaaaattattattaatgccaacagcaacaaataataatattaaaagtgaACCATTAGAAATTAATTCTATAAATCAAGAAGATGAAAATGATGAGAATGATGATGAggaagaacaacaacaacaacaacatgatgatgaaacaataaatgataatcatattgaaattgaaacaGTATTTGTTTGTGAAATATGTACACGTGATTTTAATGATCGTGCATCATTATGGTTACATATACGTGCAACACACAAAGAATATGCTGCATTTGCATGTggtatttgtttaaaaatatgttcagataatgaacaattattaaatcatgtTAATATGTATCATGGTGGATCAAAATTATTAGTATCTGAACAAAGACGTTATAGTTGTACAATATGTGGTAGACAGCATGattctagaaaaaaattaataacacatGTATCAATACATAATATTGATTCATCATATGATCCAGCTAATTTTGTACAgcttaattcaaattattacaGTGATAATATaccaataataaatgatgGACAAGAACAATGGACTGATTTTGATGCTGAAGATGgtgaaaaagtaaattgtCATGTTTGTTTTAAATCATTTCCAAATGAAGATCATTTAATACGTCATCAACGTAATGCACATAAAACagatcaattaataaatgatacaacagcaacattatcaacaacaccatcatcatcatcaacaacaacaacaacaaatggtACAAAAGGaccatataatttattttatgtttgtgAATTATGTGGTAGTTCACATCCAAGTAAATGGGAACGCTGGCTTCATGTATCAAATACTCATTATGATGATGCAACAATAAAATGTGAACGTACTGATTGTgccaaaatattttcaacaaaatcattaaaaaatgatcatgTACAACATCATGCAATGCAGGGACCATCACCAAATACATGTGAAATATGTGGTAAATTATGGGGAAGTAGAGTTGATTATTGGAAACATGTTATGGGTGTACATGCTGATACAGTACCATTAATATGTGGTGTTTGTTTAAAAGTATTTCCTGATGTTTATCAACTTAGTTTACATGTTAAAAATCATTGGCCATTGACAAATGGTGATTTTAGTTGTGATATTTGTGGTCGTccatattcaaataaatcaaaaatgtcACGTCACAGAAAAATACATggtattgttgataatgatttgatgatgatgacgacaacaatgacaacaacaacaacaaatggtatgtcattattaaatcaaataaataatgatgatgataataatattatgatgaatgataatatacaagattataatttaacatgtGAAATATGTACagataaaagttttataaattgggATGATTTATGTAATCATCGTAGATTAACACATGGTTTATTTCCATGTGATTTGTGTAATAAATGTTATGGTAGAGCATCACATCTTTGGAAGCATGTTAATAGAGTACACAAAGGACATAGTGATGTAACATGTcgttattgtttaaaaacaaGTGCATCAAAAGATCATCTTGCTGCTCATATTGCTAAAACTCATCGTTATGAACCAgatgaaaaacaacaattaattaataattacattaataGTAAAACAAGTGGTGGTAGTAgtggtggtgttggtgttggtggtgatgatgatgttattcATCATTgtgaaaaatgtaataaagGTTTTcataaaagatatttattaCGTAGACATATGAAAGGTTGTCAAAATTATCGTAAAGATCCTGGTGCATTATTAACACGTTGTCGTGCATGTGaaagaatatttaaagatCGTGCAAGTTTACAAAAACACATTGAAAATCATCACAGTAGTTATACATGTCATTTGTGTAATGAAACAATAACATCAAAACTTGGTATTATGACACACAATAGAATTAATCATATGAATCATGATGATTTAACATGTACatcatgtaaaaaattatttagaacaaAAGAAGATCTTGATGTTCATAAAAAAGAtcataaatatcataattcattaaatgttTGTGATTTTTGTGATACTGTTGAGAGTaagctaaaattaaaaatgcataTACTTAGTTTACATAGAAATGAAATTGGTGTATCATGTGGTGTATGTTTAATTCCAATGAAAGATCCaaaggatttaaaaaaacacgTTGAGGATGAACATCCTGGTATATTATCACGACCAAATACATGTCAAGTTTGTGGTAAACAATATGCATCAAAATGGAAAGCATTTGATCATACTAAAAAATGTCATGGTAAAGTATTTAGAACATGTAAACAATGTTTAGCTGTATTTAcaagtgatgatgatattagaTATCACTATGAATACATTCACAATGTAACTAAAGAACAACTTGCTAATATTGAAAGCAGTTATGATAATTCATCTAAAATTGATGATCAATCAATTGACATTGATTACTtggattatgatgatgatgatgataataattcattattatacaataatagtttttcaacaacaaaacgCAAAAGATCAGAGTCACATGAGTGTGATATTTGTTATGAATTATTTGCAAATGACGATGAATTTGGTCAACATTATCGTGATGTACATAATAAAGATCCAGATaagatgtttaaaaaaattaaatccaagaaaaaatctaaaaatcgTGATAATTATGAATGTAAAAGTTGTACAAAACAATTTAGTACAAGATCATTGTATTGGAAtcacataaaaatatgtacaaataaatatttaaaagatgatTTAGAAAGTGGCAATTCAATGTCGATACTTGAATCacatcttaaaaataataatcaattaaaaatacaacaacaacaacaacaacaatatgataataataatgatgattttactGATGCAGCTGCTGGTggtgctgctgctgttgttgatgatgatgataataatgatgtaaTGAATGATATGAGTTTAAATATAcctgattttaatttatttgaagataTTAATATGCAATTATCTGGACAAAAACCTTTGCCACCATTGATGCCACTGACAACAGTAAAAAATCCACAGCCAACAAAATGTTATCGTAAAGATTCAAGAAAAGTTTATGATGAATCAACAAATACTGTGTGTGCTTGTGAAGTGTGTGGTAAACAATGGCCAgctaaaaaacatttatggCAACATTTAATTAGATTTCATCGTGCTGAAGCTGCTGTAACATGTGgtgtttgtttaaaattatgtaaaacatattttgatttatcatgtCATTTAAAAGAAGCACATGAAGCAATATTAAGCTGTGaaggaaataattttacatgtaaAACTTGTGGTAGATATCACAATGCAAGAAGTAAATTATTACTTCATATGAgtattcatattaataataatgaacatATTTGGTGTATGAAATGTGCTGTTAGTTTTGAAAatcaagataaattaaatgaacatgctaataattgtattgtTAAACGTCGTGAAGAAGCTGATGTTGGGGAccaaattatagaaaaaaataatattaaacatgaaaatgaagaacaagaagaagaacaacaacaacaacaacaaaataaaaaagcagaAGAGCACGAAGAACAACAAGAACAagtagaagaagaagaagaagaaggagAATATGATGATAAAGGTAGTTTAATTGGTGATGGTGCTTCATTGATGGAAGAAGTTGGTGAAGAAGCTGATTTTGAAAGTGAACATGAAGCATTTGAAGATAatggtgaaaataatactGAACAAAGTGAACATTCACAACACTCTGAAGATTCTGATAGCAGTAGCAGTAGTAGTAGCAGTAATAGTAGTGTTGCAGCATCAGCCagtgaagatgaagaagaagaagaagaagccGAGGCCAATGCCAAAGATACAACAAAATGCTctgatgttattattaaagagCATGAAAgtcatgatgataaatcaaatatttcaattgatattaaaccagttataaataatgattcatcaacaagtcaagaaaataaaaatgatgatgaaaaattattaaacactGTTGATGTAAATGAGcctattaatattaaatgtgaaaaaaattctaataatgaagaaaaaccATTAATATCAAGTGAATCTTCTCCAAAGccagatgataatgataataataattatgataaaataaaacaagataaagatgaagaagaaaatgaaaatgaagaagaagacgaagaagaagaagagatGGCAATTGATTCAGAGCATGATGAAAGTGTCGAACAAGATGAAcaaaatgaagaagaaaatgaaggtgaagatgatgatgatcaagtagaagaagaagaagaagaagaagaacaagAAGACGAGGCGGAGGAGGAAGAAGATATATATCCAGAAGTAAATCATGAAGGTTTAGAAGGCATAAAAGATATTGATTATGAACAATCATCTCCTGATAAATCACACGATGAAATTGAatctgataatgaaaataatgaagaagagGAGGGGGTATTTGTAACTGAGCATGAAGATGAAATGCAAATTGAAAATCTTGATGGTACTGTATTAATGatCTTCATCATGAAGCAAATTGTTTGTGAACAGACTGTCAAAGTCCCAGAGGGATTGACTGTTACAGTCAAATCTCGTTTGGTGACTGTTAAAGGACCCCGAGGTGTCCTCAAGAGATCCTTCAAGCACTTGGCTCTTGACATTAAAATGGTTGGTCCAAGAACCTTGAAAGTCCAAAAATGGTTTGGAACTAAAAAAGAGTTGGCTGCTGTAAGAACAGTTTGTTCTCACATTGAAAATATGTTAAAGGGAGTCACCAAGGGATTCCTTTACAAGATGAGAGCAGTATATGCCCATTTCCCAATTAATTGTGTTGCCACTGAAAACAACACAGTTATTGAAATTAGAAATTTCCTTGGAGAGAAATACATTCGTCGTGTTAAAATGTCACCAGGTGTTACTGTATCAAACTCAACTCAACAAAAGGAAGAGTTAATTATTCAAGGTAACTCACTTGAAGATGTCTCAAGATCAGCAGCCCTCATTCAACAGTCAACAACTGTTAAAAATAAGGATATCAGAAAGTTTTTGGATGGATTATATGTATCACAAAAAACAACTGTTGTCCAAGATGATGattaa
Protein Sequence
MPILIPEAPVVNPNAALGTPPRLNSDGEAIHDLEMGQSSTDDCQYYLDDNNHNNKSDEYEMDIELNPSDFLDMITDMESSNQIDQISSHDVFKHTSEQHEVYVCSLCDKAFSSKGHLSLHAKIHVGAENDVVGEKVITDDHTSYKRPYQCDLCNKSYSTAKHRWGHVSTTHRGHPAVTCRFCSRIYSTRINLEEHIKSRHTGLSAPPEPPGPYIQQDTRFQCKKCPKMYTNITDLNKHSRVCIVGGGVGNERTKNKNKNNHNNKLPIKGKCLMDASDDMSSNESDDYSREYRNAEAKLSKNPQLTILKQALTRNNNNNNNEGINKRLKIKDKKKLIIKKEMIDGGGYSKEYEKIQEKPYICTLCKKDFVVKSSLSRHILSSHGIDPSPFIENDKCLKKLLLMPTATNNNIKSEPLEINSINQEDENDENDDEEEQQQQQHDDETINDNHIEIETVFVCEICTRDFNDRASLWLHIRATHKEYAAFACGICLKICSDNEQLLNHVNMYHGGSKLLVSEQRRYSCTICGRQHDSRKKLITHVSIHNIDSSYDPANFVQLNSNYYSDNIPIINDGQEQWTDFDAEDGEKVNCHVCFKSFPNEDHLIRHQRNAHKTDQLINDTTATLSTTPSSSSTTTTTNGTKGPYNLFYVCELCGSSHPSKWERWLHVSNTHYDDATIKCERTDCAKIFSTKSLKNDHVQHHAMQGPSPNTCEICGKLWGSRVDYWKHVMGVHADTVPLICGVCLKVFPDVYQLSLHVKNHWPLTNGDFSCDICGRPYSNKSKMSRHRKIHGIVDNDLMMMTTTMTTTTTNGMSLLNQINNDDDNNIMMNDNIQDYNLTCEICTDKSFINWDDLCNHRRLTHGLFPCDLCNKCYGRASHLWKHVNRVHKGHSDVTCRYCLKTSASKDHLAAHIAKTHRYEPDEKQQLINNYINSKTSGGSSGGVGVGGDDDVIHHCEKCNKGFHKRYLLRRHMKGCQNYRKDPGALLTRCRACERIFKDRASLQKHIENHHSSYTCHLCNETITSKLGIMTHNRINHMNHDDLTCTSCKKLFRTKEDLDVHKKDHKYHNSLNVCDFCDTVESKLKLKMHILSLHRNEIGVSCGVCLIPMKDPKDLKKHVEDEHPGILSRPNTCQVCGKQYASKWKAFDHTKKCHGKVFRTCKQCLAVFTSDDDIRYHYEYIHNVTKEQLANIESSYDNSSKIDDQSIDIDYLDYDDDDDNNSLLYNNSFSTTKRKRSESHECDICYELFANDDEFGQHYRDVHNKDPDKMFKKIKSKKKSKNRDNYECKSCTKQFSTRSLYWNHIKICTNKYLKDDLESGNSMSILESHLKNNNQLKIQQQQQQQYDNNNDDFTDAAAGGAAAVVDDDDNNDVMNDMSLNIPDFNLFEDINMQLSGQKPLPPLMPLTTVKNPQPTKCYRKDSRKVYDESTNTVCACEVCGKQWPAKKHLWQHLIRFHRAEAAVTCGVCLKLCKTYFDLSCHLKEAHEAILSCEGNNFTCKTCGRYHNARSKLLLHMSIHINNNEHIWCMKCAVSFENQDKLNEHANNCIVKRREEADVGDQIIEKNNIKHENEEQEEEQQQQQQNKKAEEHEEQQEQVEEEEEEGEYDDKGSLIGDGASLMEEVGEEADFESEHEAFEDNGENNTEQSEHSQHSEDSDSSSSSSSSNSSVAASASEDEEEEEEAEANAKDTTKCSDVIIKEHESHDDKSNISIDIKPVINNDSSTSQENKNDDEKLLNTVDVNEPINIKCEKNSNNEEKPLISSESSPKPDDNDNNNYDKIKQDKDEEENENEEEDEEEEEMAIDSEHDESVEQDEQNEEENEGEDDDDQVEEEEEEEEQEDEAEEEEDIYPEVNHEGLEGIKDIDYEQSSPDKSHDEIESDNENNEEEEGVFVTEHEDEMQIENLDGTVLMIFIMKQIVCEQTVKVPEGLTVTVKSRLVTVKGPRGVLKRSFKHLALDIKMVGPRTLKVQKWFGTKKELAAVRTVCSHIENMLKGVTKGFLYKMRAVYAHFPINCVATENNTVIEIRNFLGEKYIRRVKMSPGVTVSNSTQQKEELIIQGNSLEDVSRSAALIQQSTTVKNKDIRKFLDGLYVSQKTTVVQDDD

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
-
90% Identity
iTF_00132769;
80% Identity
-