Aerv010926.1
Basic Information
- Insect
- Aphidius ervi
- Gene Symbol
- MBD-R2
- Assembly
- GCA_015776835.1
- Location
- MKYW01000023.1:570610-578183[+]
Transcription Factor Domain
- TF Family
- MBD
- Domain
- MBD domain
- PFAM
- PF01429
- TF Group
- Unclassified Structure
- Description
- The Methyl-CpG binding domain (MBD) binds to DNA that contains one or more symmetrically methylated CpGs [2]. DNA methylation in animals is associated with alterations in chromatin structure and silencing of gene expression. MBD has negligible non-specific affinity for DNA. In vitro foot-printing with MeCP2 showed the MBD can protect a 12 nucleotide region surrounding a methyl CpG pair [2]. MBDs are found in several Methyl-CpG binding proteins and also DNA demethylase [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 1.1e-15 3.6e-12 45.6 0.1 6 69 508 571 503 578 0.92 2 2 1.7 5.9e+03 -3.1 0.0 43 62 1176 1195 1174 1209 0.79
Sequence Information
- Coding Sequence
- ATGGCGCGCAAATGTTGCGTGAAAAATTGTGATATTGATGATAATTATATAAATAATAATGAATATATAAAATTTCATAAATTTCCATATAATAGTGATGATGTTAAAAATAATTGGATTGTTAATTGTGATATTGATAATTGTGAATTAACATTAAATATACTTATATGTAATCGTCACTTTAAACGTACTGATTACGAGACGATCAAAGGACATGAATTAATACTAAAAAAAAACGCCGTACCAAGTGTTTTTCATGATTATGACAAACATCCTGATCCAATAACAATGCCAGTAAGAATATTAAATGGCTCATATAATCAACAAGATTTAGATAAAAATAAATCAATAATACCAAATTTAAATAGAACAGAATCACCAAGTTTAAATGATAGTTCTGGTGAAACATGTAATTCACGTCCAGAATCATCAACTGGTTCAATTAATCAATTAGAATCATCAGATGATATTGATAATGATATTAAACAAGAAACAAATGTTGATAATGAAGAAGAAACATTAAATGTTATTAATTTAGTTGCTGGTAAACAAAAAAATATAACAGATGATACAGTATTACCAATAATTGAATCATTTGATACATCAATTAATCATTATTCAGTTAATAAAATTATTAATGATGAACTATTAGATGATATTAATTTAAATAATTTAAATGATGATGATAAAAATTGTCAACCAGCTGTATCATGCAATGGTTTAACATTTTTTATTGGCTCAAGATTAGAAGCTAAAGATTATCACAATCAATGGTTTCCAGCTAAAGTTGTAGAAATTGATTGGACTGAACGTGAAATTCTTATACATTTTGATAAATGGAATTCACGTTATGACGAGTGGATCCCCATTGATAGTTCAAGACTTAGAAAAATACAACCACCATCTAGCGAGCAGACGCTGGTATCACCAACTCCAAATACAAATATGCGAGAATTTATTGTTGGTGATAGAGTTCTAGCAACATGGGCTGATGGAAGAAAATATCCAGCAAGAGTTTGTGCTGTTTTGGGAAATGATCGATATGATGTTTTGTTTGATGACGGTTATGCCAAGGTTGTGAAATCATCTAAAATGACTAAAATTGCTGATACATCAAACAAGAAAGAAACAACAATGGAACAAGACACATATATAGGAAGTAAACAAGAACGTAGAGATAAAAAACGTAAACATACAGTTATAGATTTATTTAGTCGTAAAAAAACAAAATCTGAAACACCAGAAAAACAAATTATTAAAAAAGAAGATACACTTGATATTGTTGATACAATTAATGGTGATAATAATGAAGCTGAAACAACTGTATATTATGATTCTGGTGTTGAACAATCAAAAAATTTTGATTCTATAAAACAAACAAAACAAAAAATACCAAAAATTAAAAAAGAATCACCAAAATATGATTTACTTGATCAAGATGATGATAGTCCTGAGTGGGTTGATGGTGAACCAAAAGGAGTTGAATCATTTACAGTTGATGGAACAAGAAGATCAATAATTGTAGCAGATAAAAGAATACCAGATGGTTGGGAAAGACATTTTACACAACGTCGAAGTGGTAATTCAGCTGGTAAATGGGATGTATTATTTATGCATATAGAAAGTGGAAAAAAATTTCGTACAAAAAGTGATGTTAGAACATTTTTTCATACACAATTAAATACTGATTTTGATCCAGAAATGTTTGATTTTTGTATACATAGAAAAAAACGTTTAAGTATTGCTAAGCCAAAAATTGAATTATCAAGTGAACCAACTAAAAAAATTAAAACACTTTTACCAAAGACTAAACCANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTCATTGACACCTGCTGGTTCAATGAATACTCCAGCTACACCATTTTCTTCAGTAGCTACTCCAGTTAACAACACATCTGTTTATATTGGTTCGCTAAAAATTGAAATGGTGGATGATTCATATAAATGTCCAAAAGAAGGTTGTTCAAAAACAGTCCGTAAAGAAAATCTTTTACAAATGCATGTTAAACATTATCATCCAGAGTATGCAAAATATTTAGGCTCAACACCAAATGTTGCTGATCTTGCATATGCAAGAACAATTGGTGAACCAGTTGTTGATGCAACACCAAAATCACGTTTTTCAGAAAAACGTAAATCACTTCAAGAAAAACCAACAACATTGTCATTTGTTAATTCACCTAGTCAAAGTTTGTCTGTTGCATCAACAGTTATATCAGATAATAATATTGTATCTGATACAGTTAATGGTCATGTTAATGATATTAAAAAATTTGAAATGATGTCACCAACGAGAAATTTAGATCATGATGATGATGTCGTTAAAAGAAATGAGGCAAATTGTGCAATGTCACCTGGTACATTATTTGATATGAAAATAAGAGAAGAAAAAACTCAAACTGGTATTAAAACATTATTACCAGTGAGATCTAGTATTTCTACTGATATAATTAAAAATGATAAATTAAAATTACTTGATGAAACACATATTGAAAAAGGAAGAGGTCATAGAAAACGACAGCTATCAGAATACAGTTCTGATGCATCAACAAAAAGTAAAAAACGTCAAGGCATACTAGAACTCACTGATGACTATGGAGATTTAGATGACAGTGCACTTGATGCTGAGGGTCCAGCTGAACCAGTCTACAGATTTAGTCGACGTAAATCAGATCCAAAAAGTGATGATAATAGTCAAAGCAGTCAGCTAAATGATTCGCCAGACAAAAAAATAGAGTGTGCTACAATTGATAATAATTATCAAATCATATCAGAAGATGGTGAGGGTGTTATGATGATGATTAATGGAGAAATGGTTAAAGTTGAACAATTAAAAAGAGAAGAAATAATAAATTGTACATGTGGTTATAGTGAAGAAGATGGTTTAATGATACAGTGTGATTTGTGTTTATGTTGGCAACATGGCCATTGTAATGAAATTGAACGTGAAAAAGATGTACCTGATAAATACATATGTTATATTTGTCGTCATCCATATCGTCAACGTCCATCACAAAAATATATTCATGATCAAGATTGGATTAAAGAAGGTAAACTTCCAGTTTTATCAAAACGAACAAAAGATCAAACAGCTATTAATAAAAGAACGGCAATGTTAAAACGTTCATATGATCTTGTTGGTTCATTATTAAAAATTCAACAAATGCTACATAGTCTAAGAGTTAAAATAAATATTGCACGTAATAAAGATCATCCAAAATTATATTTATGGTCTAAAAATTGGGATAAATCAGATATTGTTGAAAAAGATACAAATCCAATTCCAGTTTTAGAAATTATTAAAAAACAAGAAGACAATGAATTATCAATAAATTTACAAAATAATAATAATTTTATAAAAGAAGAAATAATTGATGATAAAAAAGTTATTAAAAAAAATTCAGATGATAAATTAATATCATCAGATAGCGAGTTAATGAAAATACTTGAAGAAGATACAAATACAATGTCAGATGATTTAAAAATGTCAATTATTAAAAAAGAAGATATTAAAGAAAATATATTTCATGATGTATTATTAAAATCAGATGATAAATTATTTAATTGTGATGATAAAAAATTTGATGATTTTGTTAATTTTAATGATAATGAATTAATTGATAAAAAAACATTTTTGGATAATGAAAATATTGATATTAAACCAATGTTATCATTGGTGCCTGTTCAACCATTTATACCAGAACCAGAAGCACCAATTAATCCAGCAGAATGTCGTTTACGTTTACTTGAACATGTTGAACACTTTCAAAAACATCTTGATGCATTGTTGACAAATGTTGAAGTTCAAGTTTGTGCTTTAGAAGCTATGGATTCTGATGATACTACTCAAGAATCAGATATTGATCCAAAAACAAAACAAACAATTCAAATGTTAATGAGAGATCTTAATTCATTACGAAAACTTGCTGCCTTGTGTTAA
- Protein Sequence
- MARKCCVKNCDIDDNYINNNEYIKFHKFPYNSDDVKNNWIVNCDIDNCELTLNILICNRHFKRTDYETIKGHELILKKNAVPSVFHDYDKHPDPITMPVRILNGSYNQQDLDKNKSIIPNLNRTESPSLNDSSGETCNSRPESSTGSINQLESSDDIDNDIKQETNVDNEEETLNVINLVAGKQKNITDDTVLPIIESFDTSINHYSVNKIINDELLDDINLNNLNDDDKNCQPAVSCNGLTFFIGSRLEAKDYHNQWFPAKVVEIDWTEREILIHFDKWNSRYDEWIPIDSSRLRKIQPPSSEQTLVSPTPNTNMREFIVGDRVLATWADGRKYPARVCAVLGNDRYDVLFDDGYAKVVKSSKMTKIADTSNKKETTMEQDTYIGSKQERRDKKRKHTVIDLFSRKKTKSETPEKQIIKKEDTLDIVDTINGDNNEAETTVYYDSGVEQSKNFDSIKQTKQKIPKIKKESPKYDLLDQDDDSPEWVDGEPKGVESFTVDGTRRSIIVADKRIPDGWERHFTQRRSGNSAGKWDVLFMHIESGKKFRTKSDVRTFFHTQLNTDFDPEMFDFCIHRKKRLSIAKPKIELSSEPTKKIKTLLPKTKPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSLTPAGSMNTPATPFSSVATPVNNTSVYIGSLKIEMVDDSYKCPKEGCSKTVRKENLLQMHVKHYHPEYAKYLGSTPNVADLAYARTIGEPVVDATPKSRFSEKRKSLQEKPTTLSFVNSPSQSLSVASTVISDNNIVSDTVNGHVNDIKKFEMMSPTRNLDHDDDVVKRNEANCAMSPGTLFDMKIREEKTQTGIKTLLPVRSSISTDIIKNDKLKLLDETHIEKGRGHRKRQLSEYSSDASTKSKKRQGILELTDDYGDLDDSALDAEGPAEPVYRFSRRKSDPKSDDNSQSSQLNDSPDKKIECATIDNNYQIISEDGEGVMMMINGEMVKVEQLKREEIINCTCGYSEEDGLMIQCDLCLCWQHGHCNEIEREKDVPDKYICYICRHPYRQRPSQKYIHDQDWIKEGKLPVLSKRTKDQTAINKRTAMLKRSYDLVGSLLKIQQMLHSLRVKINIARNKDHPKLYLWSKNWDKSDIVEKDTNPIPVLEIIKKQEDNELSINLQNNNNFIKEEIIDDKKVIKKNSDDKLISSDSELMKILEEDTNTMSDDLKMSIIKKEDIKENIFHDVLLKSDDKLFNCDDKKFDDFVNFNDNELIDKKTFLDNENIDIKPMLSLVPVQPFIPEPEAPINPAECRLRLLEHVEHFQKHLDALLTNVEVQVCALEAMDSDDTTQESDIDPKTKQTIQMLMRDLNSLRKLAALC
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00132662;
- 90% Identity
- iTF_00132661;
- 80% Identity
- iTF_00132006;