Acol005971.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Aphidius colemani
Gene Symbol
-
Assembly
GCA_030523065.1
Location
JAPYYR010001296.1:11957-14577[+]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 14 0.035 2.9 8.4 0.2 3 22 8 28 6 28 0.85
2 14 5.7 4.7e+02 1.5 0.0 2 20 33 52 32 54 0.91
3 14 1.5 1.3e+02 3.3 1.7 3 23 221 242 219 242 0.83
4 14 0.023 1.9 9.0 2.7 1 20 369 388 369 390 0.95
5 14 3.8e-05 0.0032 17.7 0.5 2 23 395 416 394 416 0.97
6 14 5.7e-06 0.00048 20.3 2.7 1 23 425 447 425 447 0.99
7 14 0.1 8.4 7.0 0.2 1 23 466 487 466 487 0.77
8 14 7.6e-05 0.0063 16.8 0.2 2 23 493 514 492 514 0.96
9 14 5.5e-05 0.0046 17.2 5.4 1 23 565 587 565 587 0.99
10 14 5.5e-06 0.00046 20.4 4.1 1 23 593 615 593 615 0.97
11 14 0.00059 0.049 14.0 3.2 1 23 621 643 621 643 0.98
12 14 9.3e-06 0.00078 19.7 2.1 1 23 649 671 649 671 0.98
13 14 0.00066 0.056 13.8 0.7 1 23 675 697 675 697 0.98
14 14 0.00045 0.038 14.4 2.0 1 21 705 725 705 727 0.95

Sequence Information

Coding Sequence
atgggATCATTAAGTTTGCCATGTCCCATGTGTTGTGGTGAAACTTTTAACAATTTACAACTATTAAAGGATCATTTGTTGACTATGAACAATCTTTATTGTCCAAATGGTTGCTCATTTAGGTCTGAAACAGTTGCTGATCTTATCCAACATCTTGATGAATGTATACAAGTAGATGACGTTACATTTGGTGGTGATTCTTgtgaaataaatgatgatgaaaatgtattaatggaTCATCAAAGTGTAGAAGACTTGTCTGATGATTTTTTGGTAAATGATGACGGTATCATGACAATAAATGGTTCACAAGAAATTCAAGTCAATGATAATGaaCAATTTGAAATTGATCAAGTAAGctgtgatattaaaaatgaatattcagagttaaatgaaataactgataatgataacttggaaaataatgatgacacaaatgatgaatttttatatcaaacaattgaagataataatttagaagaatcacaaattttatatgttcAAGATACAGATGATGTTATTAAAGATGACAGTATTATTGACACATTTCAAGATGATACAATTGAGTATATTGATGATGAGCAAAGTTACATTGAAATTGATcaacaagaaataattaaacaaatgccAAATGAAGATTTGGTTGATACAAATGTCATGtgtaattattgtaatatttgtgaaataaattttgaatcatTTGAAGAACATATGGCTGTATGTCATCCAGATTTATCAGctgaacaaattgaaaatggtaatgatgttgatgaagaagatatgtatgaagaaattgaaacaattatACCTGAAGAAACACCAGCACCATTAACAGTTAAACCACGTCGTCAAACAATGCAAACACTTCGTGTTGAACATTGTACTGATGAAGAAGGCCGTAGTTACATGAGAAAAGTTGTACAAATTGAACCATTTTGGGATCGTACAAATACATcaacaaatgaaacaaaacCAACATCAAtgattgaaaagtttttttcaactactaaaaatgttaataataataataaaatgcatGGTAATAATGAAGTGATTGATACATCAGAAACATTACAAATTGGTGAAACAAAACTTCAAAGACCATATCGTTGTCAgcaatgtttaaaattatttactcattCTGGTGAATTTCGTGTTCATGTTTGTTTAAATGGTAAAAATCAATGTAAATTATGTGATAAAGCATTTGCAACAATAAAAGCATTACAatcacatttaaaatatcataatgattataaaaaaaatgaaatatttaaatgtacaaTATGTGGTACTGAATTTACATCACATAAAAGTCTACGTTTACATGCAAGAATGCATGCACCAGTACGTTCAAGACGTATTGAAGCACCAGAAGGTGAATCAAAAGACTGTTTTACATGTACAGAATGtggtaaaatattatcagAATCATACAAAGATGCACACATGGCATTACATACAAGTGATGCAGTAACATGTGATATATGTAATCGTAAATTTGATTCATCTGAAAGTCTTGAAATGCATCGTGCTGTACATCAAGATTTAGGTATaactaaaaatcaattaacaaatgatttaGAAATACCACAACTTGATCCTTTATCAATTTCTCCTGATTCCCCAGTTTCAAATAATACATCACCAACAAAAGTTACAAGTTCATTACCTCCTGATCCTTCAAAACCTTATCAATGTCAGTATTGTCCAAAATGTTTTAGAAGACCACATGAAAAAGTTAAACACGAAAGAATTCATACTGGTGAAAAACCCCATATTTGTGAggTTTGTGGAAAAACATTTCGTGTATCATTTTGCTTGACTCTACATATGCGTACACATACTGGTGTACGTCCATATGAGTGTAAAGtttgtaagaaaaaatttaaagcatCATCAGTTTATAATCATCATGTATTGACACATGGTGATGCACGTGCATATAAATGTGATTATTGtacaaaaacatttaaaacacGTGTACAACTTGCTGGACATAAGAATAGTCATACAAAACCATTTCATTGTACTGAATGTTCAAGACCATTTGCATCACTTTATGCTGCACGTAATCATATTGAAAcacataaaaaagataataatctTAAATTTACTTGTCATATTTGTGGTGCATCATATGGACGTGCATTTGCTCTCAATGATCATATGAAATGTCATGCTGATGATGACAATGCTGATGATGAGCTACAACAAACATTACAACCACCAGAAGCTGCAAGAGAAGAAGAAGTACAAGATGATTATATCATGAACGAAGAAATTACTGAAGAAGAACTTATCAACGAATCTTCAGTTATCAttggataa
Protein Sequence
MGSLSLPCPMCCGETFNNLQLLKDHLLTMNNLYCPNGCSFRSETVADLIQHLDECIQVDDVTFGGDSCEINDDENVLMDHQSVEDLSDDFLVNDDGIMTINGSQEIQVNDNEQFEIDQVSCDIKNEYSELNEITDNDNLENNDDTNDEFLYQTIEDNNLEESQILYVQDTDDVIKDDSIIDTFQDDTIEYIDDEQSYIEIDQQEIIKQMPNEDLVDTNVMCNYCNICEINFESFEEHMAVCHPDLSAEQIENGNDVDEEDMYEEIETIIPEETPAPLTVKPRRQTMQTLRVEHCTDEEGRSYMRKVVQIEPFWDRTNTSTNETKPTSMIEKFFSTTKNVNNNNKMHGNNEVIDTSETLQIGETKLQRPYRCQQCLKLFTHSGEFRVHVCLNGKNQCKLCDKAFATIKALQSHLKYHNDYKKNEIFKCTICGTEFTSHKSLRLHARMHAPVRSRRIEAPEGESKDCFTCTECGKILSESYKDAHMALHTSDAVTCDICNRKFDSSESLEMHRAVHQDLGITKNQLTNDLEIPQLDPLSISPDSPVSNNTSPTKVTSSLPPDPSKPYQCQYCPKCFRRPHEKVKHERIHTGEKPHICEVCGKTFRVSFCLTLHMRTHTGVRPYECKVCKKKFKASSVYNHHVLTHGDARAYKCDYCTKTFKTRVQLAGHKNSHTKPFHCTECSRPFASLYAARNHIETHKKDNNLKFTCHICGASYGRAFALNDHMKCHADDDNADDELQQTLQPPEAAREEEVQDDYIMNEEITEEELINESSVIIG

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
iTF_00132161;
90% Identity
iTF_00132161;
80% Identity
-