Acol005718.1
Basic Information
- Insect
- Aphidius colemani
- Gene Symbol
- -
- Assembly
- GCA_030523065.1
- Location
- JAPYYR010001225.1:8056-11937[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 17 0.00037 0.031 14.6 1.1 1 23 293 315 293 315 0.98 2 17 0.019 1.6 9.2 0.8 2 23 354 375 353 375 0.96 3 17 1.2 1e+02 3.6 0.0 9 20 461 472 459 474 0.88 4 17 0.0098 0.82 10.1 1.9 1 23 547 569 547 569 0.97 5 17 0.00063 0.053 13.9 0.5 1 21 576 596 576 600 0.92 6 17 0.00058 0.048 14.0 3.8 2 23 681 702 680 702 0.96 7 17 3.5e-05 0.0029 17.8 3.8 1 23 769 791 769 791 0.97 8 17 0.00028 0.024 15.0 1.4 1 20 796 815 796 817 0.95 9 17 0.14 11 6.6 0.3 2 23 828 849 828 849 0.97 10 17 2.5e-05 0.0021 18.3 0.6 2 23 888 909 887 909 0.97 11 17 2.3e-05 0.0019 18.4 1.6 1 23 914 936 914 936 0.95 12 17 0.00055 0.046 14.1 2.7 1 23 942 964 942 964 0.98 13 17 6.9e-06 0.00058 20.1 0.4 1 23 982 1004 982 1004 0.95 14 17 1.7e-06 0.00014 22.0 0.3 1 23 1010 1032 1010 1032 0.98 15 17 1.2e-05 0.00099 19.3 0.2 1 23 1038 1060 1038 1060 0.98 16 17 5.7e-05 0.0048 17.2 2.0 1 23 1066 1088 1066 1088 0.94 17 17 0.0093 0.78 10.2 0.4 1 20 1094 1113 1094 1115 0.89
Sequence Information
- Coding Sequence
- atggaCGCCGTTAATATTGACACCAATGAACCGTCACAAGCTGCTGATAATGAGCCTGTTGATCAACATGATGATATATGTCGTATATGTTTAACAACAAGTATTGAAATGAgagatttatttgttgaagatgatgttgtatcattatcaataaaattaatggcTTGTACAAATCTTAAAATGATACCAGATGATGGTTTACCAACTCAATTGTGTTATGATTGTGCAAATAAACTTGAATCAGcatatgaattaaaattgcAAGCAGAACATGCTGATAACACACTGAGAGGTAGAATTGACAAGTGGTCAGCTAaggctgatttttttttcaatgaagtTGAAGTACATCTTAACAATGAAAGatctgttgataaaaattatgaaaacaataaatcaattattattaaagaacAATTGTCACTTTTGGAAGttgaaaaacaacaacaacaacaacaacaaattgattgccatgataaaaataatctaatgGAAGTAGAAGTAGAGCTTGGTGATGATCATGGTGATAGTAATAATACATGTAAAACCGAAAATTACAATGTTTCTGAAAGTATAACAATTGGTGAACATAATTATATGGTACAACAAGGTTACTCATTGACAAATGAAGAACAAGATAAACTTTTAGAACAAGATAGTAATCATGATACAACAGATTATACAGTTATTATggatgaaaatgatatttgtcatcaaaatgaaatgattgatgatgaacaagatataaaaaatcccataaaattaaataattctggTTCTGAcaataatgaaacaaattattttgataatttaaatttaagttGTCGATTAAAACAAGCaaatatggataaaaaaaaagatattaataaaattttttttatgtgtttcatgtgtgataaacaatttatatccAAAGACATATTAAAAGAACATATGAATTCACACGAAGAAATTCGTAATAAATTACCGATACAAAATGTACcagaaaaaatgatgaaatcaCCATTACAGCCACCATTACAACCAATAAAATCTACATCATctggtaaaaaattaaataaatgtccaTATTGTGgtaaagaatatttatatgttatatcatttaaaaaacatttgaaacaACATGAAAATTCTGATGATGTTATTGGACAACCAAGTGTTTCACAATTATCAAATGAccaagaaattaattttaatactgaTAACGATTTCGATAATACTGATGGTACATTTGAAGTTATAACTGATGATAGAGATGAAaatgacgatgacgatgatgatgatgatgacaactGTGCATACACTGAGACATTAGAAGCAAATCAAGTTGACGCGGcagaagaaaaaacaacaaatattataacaacaacTGATCAAGCTACATGTTCAACAAATGACAActtaaataaacatatcatTCTCAATGAAAcacaatcaaatataaaaattaatactttagATAATGATTCTGATTTGTTAAAGAATTCAACACAATTCAATGACGATAATAATGAAAGACaactagaaaatttattaacaacaacaaatgataataaccaagatgatgatgatgatagtataaatacaaaaataaataaacaagagaCAATCATTGAATCACgtttaccaaaaataaaatatagatgtaaaatatgtttacaagaatttcataaaaaagatgaattaaGTAGTCATGCAAATGAACATGctgcattaaaaaatatatataaatgtacagagtgtaataaaaattttggtaATGAGTTGACATTGAGAAATCATTTAATAGCAACAAATCATCGTACAATAATACAAGGTAATGAATATGAtccaaataaaagaataaaaagagtTGCTGCAAAAGCagcacaaaaaataattgataaaataaaaatagaaagtgatgatgatgatactgattataatgataaaaaaccaataataacaacatcaacaacagcaaatTTATCTTcatctgaaaaattattacttgcaataaaaaataaaacatataattttggtaataataaaagagataTTGAATGTGAAAGTTGTGGTAAAAAATGTAGttcaaaacaatatttaataaaacacatGGAACATCATGTTCGAGAAGAAAAATCAATGCAacaagatgataataaaaaaggtaaaaaaatgatggatACAAATACAAAAGAGCAAGTagttaaacaaacaaattggaATACATTTAATATGCAAAATGATTCAATGAatacagatgatgatgaggatgatgatgatgatgaatttgataACTATATGAGTTGGCCAATGGATAATCATGAATGTCCAACATGTAAAAAACGTTATAGtactaaaaaatcattattacgtCATCAATTATTACATGATGATCCAAACTATGAATGTGATATATGTCATGTAAAATTCTAtagaaaagataaattaaaagcacATTATGATAAATGTTCAGAAAAAAATCCAGATCAAGTtagaaaatgtaatatatgtggtgatatatttgaaaataatgaaatattacgTGAACACAGATCAAAACATGTTGATGAAGGTATATTAACTGAAGAAGATCTACGTGAATTAGAACCAACATcagatgataaaacaaataatgaaaaaataccaaGAAAAAGACGTACGGATATTGTTGGTTTAGAATGTACTGAatgtaataaacaatatacatCAAGAAAAGGATTATTACGTCATATACAAGTCCATgaaggtaaaaaatatttgtgtgaTATTTGTCCAAAGAAATTTTATCGTCgtgaacatttaaaaattcatgttgCAAAGCATAATATGATTAAGCCATATAAATGTTCACGTTGTTCAAAACGTTTTATTAAAGAAGAACAATTATCACAACATTTAACAAAACATGAAAgaacagttaaaaataaaatcaaagataCTGATAGTAATTCTAAAAGATTTTTATGTGAAATATGTTCAAAAAGTTTTACACAATCAACAACACTTGTTGCACATTTACGTGCACATAATGGTATTAAACCATTTGTATGTGAAGTATGTGCACGTCCATTTACAACAAatgcatatttaaaaatgcataTGAGAACtcatacaaatgaaaaaccaTACACTTGTGAATATTGTTCACGTGCATTTGCAAGAGCAGATACACTTGCTAATCATCTAACATCACATACTGGTGAGGCTAAATACTTGTGTAAATATTgtccaaaaaaatttagacgtttaaaatcattaaaagaaCATGTATTTATACATACTGGACAACGACCATATGCATGTCCAACATGTGATAgaagatttaataataatggaagTAGATATGCACATAGTAAAAGatgtaaacaaaatttaattcaaagtgCTGCTATGGTACAAGAACCAAATCTAACAAACATCATTGAAATTCAAACACAAGAGTTAccacaacaacatcaacaagatcatcaacaacaacagcaacaagatcatcaacaacaacaccatcatcagCAACTattacaacaacagcaacaacaacagcaacaacaacagctacaacaacagcaactacatgatgataatggtgatgatATGCAGCTTCATAATAATTCACTTCAACAACAAACACAACAAATACAAGTACAAATACAACAAGAACCACATCCAACACATATACATTGTACAGTTAATAATACAATGCAAGTTGTACAGAGCAAAGGcattaaaacaataacattAAGGCCTGATCTAGTTACATCTCAATTAATAcaacaagataataatatttcacttCCATATTTACCACTTACTATATTACCACTTACTGTTGCACTTACTGATGATGACGAAGTTATATTACCAGAAGgtgcaaaattatttacaacaacgcagtaa
- Protein Sequence
- MDAVNIDTNEPSQAADNEPVDQHDDICRICLTTSIEMRDLFVEDDVVSLSIKLMACTNLKMIPDDGLPTQLCYDCANKLESAYELKLQAEHADNTLRGRIDKWSAKADFFFNEVEVHLNNERSVDKNYENNKSIIIKEQLSLLEVEKQQQQQQQIDCHDKNNLMEVEVELGDDHGDSNNTCKTENYNVSESITIGEHNYMVQQGYSLTNEEQDKLLEQDSNHDTTDYTVIMDENDICHQNEMIDDEQDIKNPIKLNNSGSDNNETNYFDNLNLSCRLKQANMDKKKDINKIFFMCFMCDKQFISKDILKEHMNSHEEIRNKLPIQNVPEKMMKSPLQPPLQPIKSTSSGKKLNKCPYCGKEYLYVISFKKHLKQHENSDDVIGQPSVSQLSNDQEINFNTDNDFDNTDGTFEVITDDRDENDDDDDDDDDNCAYTETLEANQVDAAEEKTTNIITTTDQATCSTNDNLNKHIILNETQSNIKINTLDNDSDLLKNSTQFNDDNNERQLENLLTTTNDNNQDDDDDSINTKINKQETIIESRLPKIKYRCKICLQEFHKKDELSSHANEHAALKNIYKCTECNKNFGNELTLRNHLIATNHRTIIQGNEYDPNKRIKRVAAKAAQKIIDKIKIESDDDDTDYNDKKPIITTSTTANLSSSEKLLLAIKNKTYNFGNNKRDIECESCGKKCSSKQYLIKHMEHHVREEKSMQQDDNKKGKKMMDTNTKEQVVKQTNWNTFNMQNDSMNTDDDEDDDDDEFDNYMSWPMDNHECPTCKKRYSTKKSLLRHQLLHDDPNYECDICHVKFYRKDKLKAHYDKCSEKNPDQVRKCNICGDIFENNEILREHRSKHVDEGILTEEDLRELEPTSDDKTNNEKIPRKRRTDIVGLECTECNKQYTSRKGLLRHIQVHEGKKYLCDICPKKFYRREHLKIHVAKHNMIKPYKCSRCSKRFIKEEQLSQHLTKHERTVKNKIKDTDSNSKRFLCEICSKSFTQSTTLVAHLRAHNGIKPFVCEVCARPFTTNAYLKMHMRTHTNEKPYTCEYCSRAFARADTLANHLTSHTGEAKYLCKYCPKKFRRLKSLKEHVFIHTGQRPYACPTCDRRFNNNGSRYAHSKRCKQNLIQSAAMVQEPNLTNIIEIQTQELPQQHQQDHQQQQQQDHQQQHHHQQLLQQQQQQQQQQQLQQQQLHDDNGDDMQLHNNSLQQQTQQIQVQIQQEPHPTHIHCTVNNTMQVVQSKGIKTITLRPDLVTSQLIQQDNNISLPYLPLTILPLTVALTDDDEVILPEGAKLFTTTQ
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00132139;
- 90% Identity
- -
- 80% Identity
- -