Aobl022187.1
Basic Information
- Insect
- Aphidecta obliterata
- Gene Symbol
- -
- Assembly
- GCA_963966015.1
- Location
- OZ014435.1:15223749-15229495[+]
Transcription Factor Domain
- TF Family
- zf-GAGA
- Domain
- zf-GAGA domain
- PFAM
- PF09237
- TF Group
- Zinc-Coordinating Group
- Description
- Members of this family bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 4 1.1e-05 0.041 14.5 0.0 22 52 200 230 197 232 0.89 2 4 0.11 4.1e+02 1.7 0.0 22 44 256 278 250 283 0.87 3 4 0.42 1.5e+03 -0.1 0.0 26 43 316 333 308 343 0.85 4 4 0.0074 27 5.5 0.0 26 48 344 366 340 372 0.88
Sequence Information
- Coding Sequence
- ATGCAATGCCCTCAATGTAGAGATCCTATTGAAGGTATTTCCAAAAGGATTATAAAGGATTCCTGTGGTCATGAGAAATGTAGAGTTTGCTTGTTACAAGATGTGGAATTTTGCCGACAGTGTGAGGAACATGAAAACCACTATATGGACGATAAAAATTCATCGTCAGAAAATAGGACTGCAATCGTTGAAACTAATCATACAACAGTCATTACTTGCAATAAGGTTCTCAATGATTATATTATAAAGGACGAACTTGGTTTGAGAATCGATGAACAAATAGTATTAAATGAATATCAAAATCAGTCCGATGAAGTCACcgaacagaaaaatgaaaaaacatcGAAGAAAATCAAGTTGAAATCTACTTCACAAAAGCGCAGATATGAATTAATTACAATGCCTAGTCATATAACTATCGATGGGACACCTCCAACATACATTTGTAATATTTGTAAATCAAAATTCAAAACCAAAGGTCACGTGAAGTATCATAAATTTTGTTTAGGAGAGAACAAACCATATAAGTGTAATGCTTGTAATAAATCCTTCATTTTGAAATCGCAACTGAGTATTCATGAACTAATACATTCAGGAAAAAAACCATATACTTGCAAGATATGCGAGAAAGCCTTCAGGGAGTCGGGAAAATTGAAGCGTCATATGGTCCTCCATACCGACGACAAACCACACATATGCGATGaatgtggaaaaaatttcaagactgtAAATTCCCTCAAATTACACAGAGTAATACATACAGGACAAAAACCATTTCCATGTAAATATTGTAAAATGAGGTTCAATAATTCTTCGAACCTAAAGAAACATATTTTGTCACATTCCGATGACAAAACACATATGTGTGAGCAGTGTGGAAAGAAATTCAAGCAGAAATGGGCCTTGACAGTACACCGCAAATCCCATTTGCATAAACGGGATTTTATATGTGAAATATGTGACAAAGCTTTTATAAACAACAAGGATTTGAAAAGGCATGAGACTGTCCATTTAgATATTAAGATATATTCTTGTGGAATATGTTCCATGTCATTTAGAAGAAAGGATAACCTAGGTAGACATTTCAAGAATGCTCATCCAGATAAGAAGCCGGAAATTATAAAGAGAGATGTGGAAGCCCCTGATAAACGTGAGACGGCTGTTGTAGATAATCCCAATGCAATAAATGTAATAATATCATCTTCAATGTCCAAGAAGAGTGAAAACCTAAATGACCAAGCAACCTCCATGCCTAGGACTTGCATGAATGGGCCCCTCAAACTAGCTTTCAAGACATcggctttcaaaaaaaattacaatataaaTCGGGATCATCCATACGACTCGAATTCGAGAGAAGTAGCTAGGAACGGTGATCAGGATTCAATACAATCCGCCCTGAATATATTACCAACAGTCCACAATTCGCCTTCTAGAACATTTCCTAGTGTGTATTCATCAGTTGATGAATATTACGCTAATCGGCCTCATGTTATCAAGAATATCAAATTTAAAATACCTACTAACTACCCTCCAGAAGACGAGGGTTTACTGAAAACCATCATGAATCAATCGCATATGCATTCCAAAGAGGCGAAAGAAGATGCtaaaagaaaagatgaaaaagCAGAGTTGGGAAAGAGTGGTTTTAGTTTTGCCAACAGAAGGAACGATGAGATTCTTGTTGATCATCGTGGGGTGAAAGATGGTGGTGTTGGCGTTACTAGTGTTATTGTTAATTCATCTGATCAGAAGAACATGCATTGGAGAAGAAAGATGTCGAATAATATAccataa
- Protein Sequence
- MQCPQCRDPIEGISKRIIKDSCGHEKCRVCLLQDVEFCRQCEEHENHYMDDKNSSSENRTAIVETNHTTVITCNKVLNDYIIKDELGLRIDEQIVLNEYQNQSDEVTEQKNEKTSKKIKLKSTSQKRRYELITMPSHITIDGTPPTYICNICKSKFKTKGHVKYHKFCLGENKPYKCNACNKSFILKSQLSIHELIHSGKKPYTCKICEKAFRESGKLKRHMVLHTDDKPHICDECGKNFKTVNSLKLHRVIHTGQKPFPCKYCKMRFNNSSNLKKHILSHSDDKTHMCEQCGKKFKQKWALTVHRKSHLHKRDFICEICDKAFINNKDLKRHETVHLDIKIYSCGICSMSFRRKDNLGRHFKNAHPDKKPEIIKRDVEAPDKRETAVVDNPNAINVIISSSMSKKSENLNDQATSMPRTCMNGPLKLAFKTSAFKKNYNINRDHPYDSNSREVARNGDQDSIQSALNILPTVHNSPSRTFPSVYSSVDEYYANRPHVIKNIKFKIPTNYPPEDEGLLKTIMNQSHMHSKEAKEDAKRKDEKAELGKSGFSFANRRNDEILVDHRGVKDGGVGVTSVIVNSSDQKNMHWRRKMSNNIP
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00130765;
- 90% Identity
- iTF_00130765;
- 80% Identity
- iTF_00130765;