Aobl001800.1
Basic Information
- Insect
- Aphidecta obliterata
- Gene Symbol
- -
- Assembly
- GCA_963966015.1
- Location
- OZ014427.1:22657193-22658018[-]
Transcription Factor Domain
- TF Family
- zf-GAGA
- Domain
- zf-GAGA domain
- PFAM
- PF09237
- TF Group
- Zinc-Coordinating Group
- Description
- Members of this family bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 5 0.0029 11 6.8 0.1 26 44 83 101 70 107 0.89 2 5 0.0053 19 6.0 0.0 22 45 107 130 102 136 0.90 3 5 0.0032 12 6.7 0.1 25 46 138 159 132 161 0.87 4 5 0.00054 2 9.1 0.0 21 47 162 188 159 192 0.92 5 5 0.74 2.7e+03 -0.9 0.0 26 43 226 243 213 247 0.75
Sequence Information
- Coding Sequence
- atGGATTCAGAAGAGTATACTTTTATCAAGCAAACAAGTTCTTCCGGTATCacgaatataataataaatttgaaaaggAAAAGAATTGAAGAAAGAGAAATAGATCAGGAATTAGGTGAAAGTGATTACTTGGAGATTGATAACAACCAAGATTGCAGCACAGATCTAGAAGAAGGTGAAGTGAGAGATGCTAGTtccgaaatattcagaaaaaaattcaagcaaAATTGTCctacttcaaaattcaattgtGCTGTTTGTTATAGAGACTTTACTCAGAAAGGGAATTTGTTACGTCACTATCAAACGCACACAGGAGATAGACCCTTTGCTTGTAAATTGTGTGGGGGCCGCTTCTCACAGAAATCAAATCTACAAAAACATCTTGCTACACATAATGGAGACAAGAGGGTCGAATGTGGAGTTTGCCATAAAGCTTTTGTGCAGAAAGCTAATCTCATCCGACATTTGAGAGTTCATACAGGTGAAAAGCCGTTTGCCTGTGATTTGTGTGGCCATAGGTTCACCCAAAAAGCGAACCTGAAAAAGCATATGCAACTGCATACAAAAACAACAGAAACTGGATGTGACACAGCTAAGATGAGATATGAAACTAGTGCACACACCTGCGATAAATTTCCCAATCAACCAGAAAAagtggaacaaaatgtaaaccTTTGCGATGAATGTCCTGCTACATTCAAAACTAAACGAGCACTCCTCAAGCATAAAAAATACCATAAGTGA
- Protein Sequence
- MDSEEYTFIKQTSSSGITNIIINLKRKRIEEREIDQELGESDYLEIDNNQDCSTDLEEGEVRDASSEIFRKKFKQNCPTSKFNCAVCYRDFTQKGNLLRHYQTHTGDRPFACKLCGGRFSQKSNLQKHLATHNGDKRVECGVCHKAFVQKANLIRHLRVHTGEKPFACDLCGHRFTQKANLKKHMQLHTKTTETGCDTAKMRYETSAHTCDKFPNQPEKVEQNVNLCDECPATFKTKRALLKHKKYHK
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00130785;
- 90% Identity
- iTF_00130785;
- 80% Identity
- iTF_00130785;