Aobl016189.1
Basic Information
- Insect
- Aphidecta obliterata
- Gene Symbol
- -
- Assembly
- GCA_963966015.1
- Location
- OZ014432.1:22136860-22137908[+]
Transcription Factor Domain
- TF Family
- zf-GAGA
- Domain
- zf-GAGA domain
- PFAM
- PF09237
- TF Group
- Zinc-Coordinating Group
- Description
- Members of this family bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 4 0.27 1e+03 0.5 0.0 26 36 132 142 117 153 0.78 2 4 0.0017 6.2 7.5 0.1 22 46 187 211 180 213 0.87 3 4 2.4e-05 0.089 13.4 0.0 21 52 214 245 210 246 0.90 4 4 0.0027 10 6.9 0.0 21 48 242 269 240 272 0.91
Sequence Information
- Coding Sequence
- ATGGATTACAATTCTGAAGATTCCTATGATATGCCTCTGGAACCTATGATTTTGATAAATGATGGTGAAGAGgaagatgaagaaaaatcaaaagtaACGGATGAAAAGAACAACTTGGAATTAATACAATCTATTGGCCCTGATATTTCCATCATACCAATAAAGAGAAAGAAGCCCctattcaaaataaaactttttgagagaaaaaaaggaTTACCAAGACAGAATTCATACTCGGATGATGAAGACCTAACGAACGATTTATACAAAGATGATCAAGGTTCTGTACAAAGCTATTCAAGAGGTCCAAGAAATACTGTTCGAAAAATAACCAAAGAAGAAGCGGATCATACTTCTGAAACATATCAAAAACGCAAATCTCTCCCGTTGGAAAAATGTCCTGTAtgtatgaaatttttcaggagaaTGGCCACCCACTTATTGAAACATGAATATGTGGATCCTAATTTACAAAACAATGCTTTAATATGCAATTATTGCAGTAGAACTTTTAACACTCAAAGTAACCTATTAATTCATTTGAGAACCCACACCGGTCAAAAACCGTATGTTTGTGAAATATGCAATAAAGGGTTCTCTCAATCTTGTAACTTAGTTAACCACATGAGAATTCACAGTGGAGAGAAGCCGTTCAAATGTCCTCATTGCGACAAAGCTTTTACACAGTCAGGTAATTTGAATAATCACATAAGGCTTCATACAAATGAAAAACCTTTTAAGTGCCATTTTTGCGACAAAGCCTTTGTTCAATCAGGTAATTTGAACTCGCACATCAAGAACAATCACAAATATTCCTCCAGCATAATTCCCATTGATAGGGAGCCCAGTTTAGCTGAATCAATTTTGAACCACacaatttga
- Protein Sequence
- MDYNSEDSYDMPLEPMILINDGEEEDEEKSKVTDEKNNLELIQSIGPDISIIPIKRKKPLFKIKLFERKKGLPRQNSYSDDEDLTNDLYKDDQGSVQSYSRGPRNTVRKITKEEADHTSETYQKRKSLPLEKCPVCMKFFRRMATHLLKHEYVDPNLQNNALICNYCSRTFNTQSNLLIHLRTHTGQKPYVCEICNKGFSQSCNLVNHMRIHSGEKPFKCPHCDKAFTQSGNLNNHIRLHTNEKPFKCHFCDKAFVQSGNLNSHIKNNHKYSSSIIPIDREPSLAESILNHTI
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00130790;
- 90% Identity
- iTF_00130790;
- 80% Identity
- iTF_00130790;