Apic020250.1
Basic Information
- Insect
- Aphaenogaster picea
- Gene Symbol
- -
- Assembly
- GCA_003063865.1
- Location
- NJRM01000157.1:65385-66990[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 12 0.87 98 4.2 0.1 2 20 88 105 87 107 0.78 2 12 0.0087 0.98 10.5 0.3 5 20 118 133 117 136 0.93 3 12 0.0055 0.62 11.1 3.0 1 23 142 165 142 165 0.94 4 12 0.00029 0.032 15.1 0.7 1 23 173 195 173 195 0.98 5 12 0.11 12 7.0 0.6 1 15 250 265 250 272 0.84 6 12 0.0017 0.19 12.7 0.3 2 21 283 302 282 303 0.93 7 12 1.5e-05 0.0017 19.2 3.2 1 23 325 347 325 347 0.96 8 12 0.002 0.22 12.5 1.1 1 23 352 375 352 375 0.95 9 12 2.1e-05 0.0024 18.7 0.2 1 23 381 403 381 403 0.98 10 12 7.6e-05 0.0085 16.9 1.5 1 23 410 432 410 432 0.98 11 12 0.00079 0.089 13.7 0.6 3 23 440 460 438 460 0.97 12 12 3.9e-05 0.0044 17.9 0.1 1 23 466 489 466 489 0.98
Sequence Information
- Coding Sequence
- ATGGAGACCCATGAGGGAAAGCAGTGTGACGGCCTTACAGAGGTCATGATCAGtaacactgccagtactgacaTTATGGAGACGCAAGGTACCGTTGAGATCCTTGTAAAACAGTCAGAAGAGAAAAACGAAAACCAGGTGGTGTATCCTATGTATATCAAGCAAGAACAGCAGTATACGTCGGGTGATGAGTATAAGTCCATGGTTATGGAAGCTCTGCGACAACTGGGCGGTACGTACCCATGCTTCGAGGACAAGATCAGTTGTCCAGTCTGTAAGCACCTTTTTACCCAAGAAGAAATGGTTGAACATCAATCTGTATATCAGTCAGCACCTAAGTTATCCTACACCACTTGCGGAGAAAGATTTGAGAGAAAGATTGATTTGAATAATCATATGGTTTGTCATCAAGTAGATTGTCTTCATGCTTGCAGAACATGCGGCAATTTGTTCTGTTCCAAGAGCCGTTTGCAAGCACATATGTTACAGGCACACATGCATTATGTCGAACAACCGTACAAATGTATTATCTGTGGTTCGAACTTCCAGAGGCTTTCCAGCTTGTCCAATCATATGAAGATACATGATTATGTCCCAGGGCGAGCCATCATGCAGTTACAAAGTAATAATGTGTCTCAATCAGTGGAAACTTTCAGGAAATGGCCGGAAAATGTGTCTGATTTGCAAAACGCTTCTCAGATACAGTCTTCTTCATCTGTTCAGTCTATACAGAACAACAGTAAACAATACACGTGTAAACATAATTGTGGAACCAATTTTTCACACGCAGCCACGTCGGCATCTCACGAGAAGATTTCTGCTTCGAAAAACTGGAATATGAAGATCGAGTGTGAATATTGCGACAAACAGTTTCAGGACGGTAACCATTTGGCGACTCATCAAACCACTTGCGCCAAGAAGATAATGCAGAACAACATCGAGCAAGGTGTGCCCAATAATAAATGGTGTAAGCATGCTTGCTCAGAATGTGGAAAGAAATTCACGACCAAGCAGAAGATGTTTCGTCACCAGATAATCCATTACAAGAAGACTCACTCATGTGAAGTGTGCGGTTCGCAATTTGAAAAGCAGAACGAACTGAATGAACATCGATTATCAACTCATCCCGGAGATACGCCGTTTACCTGTACGGAATGCGGGAAGAGCCTCGTGTCGCGGCAAGGTCTTTGGGAACACGGTAGAACGCACGTCGGAAGTCCGGCCCATTTTCGTTGCCAAATCTGTTCGAAAACGTTCTCATCTCGCCAGGGATACTTAATACATAATCGTATACATACCGATGAACGACCGTACGGCTGCAAGTTTTGCTTGAAGGCGTTTCGAGACGGCGGAACTTTAAAGAAGCATGAGCGAATCCACACGGGGGAGAGACCGTACGTGTGTCCGTTATGCTCGCGGGCTTTTAATCAGAAGGTGGTTCTGCGCGAACATGTTCGATCGGTTCATCGACGGATTCATGCAGTAGGAAAAACCGAGACAGGAGCGAGCAGTCCTCCAATATAA
- Protein Sequence
- METHEGKQCDGLTEVMISNTASTDIMETQGTVEILVKQSEEKNENQVVYPMYIKQEQQYTSGDEYKSMVMEALRQLGGTYPCFEDKISCPVCKHLFTQEEMVEHQSVYQSAPKLSYTTCGERFERKIDLNNHMVCHQVDCLHACRTCGNLFCSKSRLQAHMLQAHMHYVEQPYKCIICGSNFQRLSSLSNHMKIHDYVPGRAIMQLQSNNVSQSVETFRKWPENVSDLQNASQIQSSSSVQSIQNNSKQYTCKHNCGTNFSHAATSASHEKISASKNWNMKIECEYCDKQFQDGNHLATHQTTCAKKIMQNNIEQGVPNNKWCKHACSECGKKFTTKQKMFRHQIIHYKKTHSCEVCGSQFEKQNELNEHRLSTHPGDTPFTCTECGKSLVSRQGLWEHGRTHVGSPAHFRCQICSKTFSSRQGYLIHNRIHTDERPYGCKFCLKAFRDGGTLKKHERIHTGERPYVCPLCSRAFNQKVVLREHVRSVHRRIHAVGKTETGASSPPI
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00129955; iTF_00126938; iTF_00128446; iTF_00127679;
- 90% Identity
- iTF_00127679;
- 80% Identity
- -