Amia017626.1
Basic Information
- Insect
- Aphaenogaster miamiana
- Gene Symbol
- -
- Assembly
- GCA_003063725.1
- Location
- NJRN01000746.1:52866-54460[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 12 0.86 97 4.2 0.1 2 20 83 100 82 102 0.78 2 12 0.0034 0.39 11.7 0.5 5 20 113 128 112 131 0.93 3 12 0.0054 0.61 11.1 3.0 1 23 137 160 137 160 0.94 4 12 0.00028 0.032 15.1 0.7 1 23 168 190 168 190 0.98 5 12 0.00088 0.1 13.6 0.8 1 21 245 266 245 267 0.94 6 12 0.0017 0.19 12.7 0.3 2 21 278 297 277 298 0.93 7 12 1.4e-05 0.0016 19.2 3.2 1 23 320 342 320 342 0.96 8 12 0.0019 0.22 12.5 1.1 1 23 347 370 347 370 0.95 9 12 2.1e-05 0.0023 18.7 0.2 1 23 376 398 376 398 0.98 10 12 7.4e-05 0.0084 17.0 1.5 1 23 405 427 405 427 0.98 11 12 0.00078 0.088 13.8 0.6 3 23 435 455 433 455 0.97 12 12 3.8e-05 0.0043 17.9 0.1 1 23 461 484 461 484 0.98
Sequence Information
- Coding Sequence
- ATGGAGACCCATGAGGGAAAGCAGACGGCCTTACAGAGGTCACGATCAGtaacactgccagtactgacaTTGTGGAGACGCAAGGTACCGTTGAGAAAACAGTCAGAAGAGAAAGACGACAACCAGGTGGTGTATCCTATGTATATCAAGCAAGTACAGCAGTATACGTCGGGTGACGATAAGTCCATGGTTATGGAAGCTCTGCGACAACTGGGCGGTACGTACCCATGCTTCGAGGACAAGATCAGTTGTCCAGTCTGTAAGCACCTTTTTACCCAAGAAGAAATGGTTGAACATCAATCTGTATATCAGTCAGCACCTAAGTTATCCTACACCACTTGCGGAGAAAGATTTGAGAGAAAGACTGATTTGAATAATCATATGGTTTGTCATCAAGTAGATTGTCTTCATGCTTGCAGAACATGCGGCAATTTGTTCTGTTCCAAGAGCCGTTTGCAAGCACATATGTTACAGGCGCACATGCATTATGTCGAACAACTGTACAAATGTATTATCTGTGGCTCGAACTTCCAGAGGCTTTCCAGCTTGTCCAATCATATGAAGATACATGATTATGTCCCAGGGCGAGCCATCATGCAGTTACAAAGTAATAATGTGTCTCAATCAGTGGAAACTTTCAGGAAATGGCCGGAAAATGTGTCTGATTTACAAAACGCTTCTCAGATACCGTCTTCTTCATCTGTTCAGTCTATACAGAACAACAGTAAACAATACACGTGTAAACATAATTGTGGAACCAATTTTTCACACGCAGCCACGTTGGCATCTCACGAGAAGATTTCTGCTTCGAAAAACTGGAATATGAAGATCGAGTGTGAATATTGCGACAAACAGTTTCAGGACGGTAACCATTTGGCGACTCATCAAACCACTTGCGCCAAGAAGATAATGCAGAACAACATCGAGCAAGGTGTGCCCAATAATAAATGGTGTAAGCATGCTTGCTCAGAATGTGGAAAGAAATTCACGACCAAGCAGAAGATGTTTCGCCACCAGATAATCCATTACAAGAAGACTCACTCATGTGAAGTGTGCGGTTCGCAATTTGAAAAGCAGAACGAACTGAATGAACATCGATTATCAACTCATCCCGGAGATACGCCGTTTACCTGTACGGAATGCGGGAAGAGCCTCGTGTCGCGGCAAGGTCTTTGGGAACACGGTAGAACGCACGTCGGAAGTCCGGCCCATTTTCGTTGCCAAATCTGTTCGAAAACGTTCTCATCTCGCCAGGGATACTTAATACATAATCGTATACATACCGATGAACGACCGTACGGCTGCAAGTTTTGCTTGAAGGCGTTTCGAGACGGCGGAACTTTAAAGAAGCATGAGCGGATCCACACGGGGGAGAGACCGTACGTGTGTCCGTTATGCTCGCGGGCTTTTAATCAGAAGGTGGTTCTGCGCGAACATGTTCGATCGGTTCATCGACGGATTCATGCAGTAGGAAAAACCGAGACAGGAGCGAGCAGTCCTCCAATATAA
- Protein Sequence
- METHEGKQTALQRSRSVTLPVLTLWRRKVPLRKQSEEKDDNQVVYPMYIKQVQQYTSGDDKSMVMEALRQLGGTYPCFEDKISCPVCKHLFTQEEMVEHQSVYQSAPKLSYTTCGERFERKTDLNNHMVCHQVDCLHACRTCGNLFCSKSRLQAHMLQAHMHYVEQLYKCIICGSNFQRLSSLSNHMKIHDYVPGRAIMQLQSNNVSQSVETFRKWPENVSDLQNASQIPSSSSVQSIQNNSKQYTCKHNCGTNFSHAATLASHEKISASKNWNMKIECEYCDKQFQDGNHLATHQTTCAKKIMQNNIEQGVPNNKWCKHACSECGKKFTTKQKMFRHQIIHYKKTHSCEVCGSQFEKQNELNEHRLSTHPGDTPFTCTECGKSLVSRQGLWEHGRTHVGSPAHFRCQICSKTFSSRQGYLIHNRIHTDERPYGCKFCLKAFRDGGTLKKHERIHTGERPYVCPLCSRAFNQKVVLREHVRSVHRRIHAVGKTETGASSPPI
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00129215;
- 90% Identity
- iTF_00127679;
- 80% Identity
- -