Basic Information

Insect: Aphaenogaster picea
Gene Symbol: -
Assembly: GCA_003063865.1
Location: NJRM01000067.1:86072-89074[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 18 0.0034 0.38 11.8 4.4 1 23 16 38 16 38 0.98

2 18 0.00021 0.023 15.6 2.5 1 23 44 66 44 66 0.98

3 18 7.2 8.1e+02 1.3 11.0 1 23 72 94 72 95 0.96

4 18 8.5e-05 0.0095 16.8 3.5 1 23 111 134 111 134 0.95

5 18 0.22 25 6.0 1.0 3 23 145 165 143 165 0.95

6 18 3.6e-07 4e-05 24.3 1.2 1 23 171 193 171 193 0.98

7 18 2.9e-06 0.00033 21.4 1.1 1 23 199 221 199 221 0.97

8 18 2.4e-08 2.7e-06 27.9 0.5 1 23 227 249 227 249 0.99

9 18 0.39 44 5.3 0.4 3 23 284 305 283 305 0.96

10 18 0.0019 0.21 12.6 1.0 1 23 311 334 311 334 0.96

11 18 0.44 49 5.1 0.3 2 23 340 362 339 362 0.95

12 18 4.8e-05 0.0055 17.6 0.0 1 23 367 389 367 389 0.98

13 18 0.033 3.7 8.6 0.3 2 23 396 418 395 418 0.94

14 18 1.5e-05 0.0017 19.2 2.2 1 23 437 460 437 460 0.93

15 18 0.0019 0.21 12.5 0.1 1 23 471 493 471 493 0.95

16 18 0.017 1.9 9.6 3.2 1 23 499 521 499 521 0.94

17 18 4.5e-07 5.1e-05 23.9 1.1 1 23 527 549 527 549 0.98

18 18 1.6e-05 0.0018 19.1 0.1 1 21 555 575 555 576 0.96

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	18	0.0034	0.38	11.8	4.4	1	23	16	38	16	38	0.98
2	18	0.00021	0.023	15.6	2.5	1	23	44	66	44	66	0.98
3	18	7.2	8.1e+02	1.3	11.0	1	23	72	94	72	95	0.96
4	18	8.5e-05	0.0095	16.8	3.5	1	23	111	134	111	134	0.95
5	18	0.22	25	6.0	1.0	3	23	145	165	143	165	0.95
6	18	3.6e-07	4e-05	24.3	1.2	1	23	171	193	171	193	0.98
7	18	2.9e-06	0.00033	21.4	1.1	1	23	199	221	199	221	0.97
8	18	2.4e-08	2.7e-06	27.9	0.5	1	23	227	249	227	249	0.99
9	18	0.39	44	5.3	0.4	3	23	284	305	283	305	0.96
10	18	0.0019	0.21	12.6	1.0	1	23	311	334	311	334	0.96
11	18	0.44	49	5.1	0.3	2	23	340	362	339	362	0.95
12	18	4.8e-05	0.0055	17.6	0.0	1	23	367	389	367	389	0.98
13	18	0.033	3.7	8.6	0.3	2	23	396	418	395	418	0.94
14	18	1.5e-05	0.0017	19.2	2.2	1	23	437	460	437	460	0.93
15	18	0.0019	0.21	12.5	0.1	1	23	471	493	471	493	0.95
16	18	0.017	1.9	9.6	3.2	1	23	499	521	499	521	0.94
17	18	4.5e-07	5.1e-05	23.9	1.1	1	23	527	549	527	549	0.98
18	18	1.6e-05	0.0018	19.1	0.1	1	21	555	575	555	576	0.96

Sequence Information

Coding Sequence: ATGAACATAGCTCGCCACAAACTGATTCACACGGGGTTGAAGGTGTTTACCTGCGATCTCTGCGAATACAGCACTAACCAAAAGTCCAATCTGGAATGCCATCGTCGACGGCACGCGAAAGACTATAGCTTCAAGTGCGAGACGTGCGGCAAGGGCTTCTTCCACAGGACTGAATACCTGGAGCATCAGAACGCGCACACGAACAAGAGCCTGTATCGCTGCGAGCATTGCTGTAAGCATTACTTGTACAAGAAGAACCTGTCGGTGCACCTGATGACACATCACGCCGGCAAACAGGCCGCTGCGGCCGCGAGGAACGCGAAGACGAGGCACGCATGCAAGTTCTGCCCGGAGAGATTCGTGTACAAGAGGCTGCTGAAGAGGCACATGAAGAATCAACACGGTTTCGCGGACGCGCCAGCAAAGCACCTGTGCGATCTGTGCGGCGCGGAACTGTCGTCGATGAGACGACTGACGGTGCACAAACGCAATCACGCGGGCGAGAGGGTCTTCGAGTGCGATACGTGCGACAAGAGGTTCGCCAGCAAGGAGAACCTGAGCATCCACAAGCGGACGCACACAGGCGACAAACCGCATGTGTGTCCGCAGTGCGGCCGCGGTTTCACGCAGAGGACTTCCTTGGTCCTGCATCTGCGGTATCACTCGGGTCAGAGGCCTTATCAGTGCCCGGATTGCGGCAAGGGGTTCGTGTCCAACACCTTACTCAAGAGGCATCGTAAAGTGCACGAGAGGGCCGCGCAACCGAAGCTCCAGTGGACGAATAATCACGATGTGAAGAACGAGGATCTACCTGATCTTGGACAAAAATTCGAAGGTGGCGAGAAGATCTGCGAGCTGTGCCAGGCGAAATTCCACTTCGTCACCAGACTGGTCGCGCACTTGAGAATAGCACACGGCATCCATCGACCCTTCAAATGCATCACCTGCGACAAGAATTACCCTCAGCAGTTTATGCTTAACGCCCACGTGAAGAAGTCGCACACACCGAAGACTGTGCCGTGCACCCAGTGCAGCTTCATGGGTGTGAACGTGACCGACGTGGAGAGGCACAGACGGCGACGTCACCGAGTCCCGAAATTCACGTGTGAGATTTGCAGCGAGGATTTCGCCGACAAGGACGCTCTGATCGCGCACACGACGATGCACGACTTCATGCAATATCAGCGATGCAACGCGTGCGGTAGCATCTTCAACGACGTGTACAGCTTGAAGGAACACAATCGTCTCTACCACTACGATCCTGCGTCGGACGAGAAATTTGAAGAGTCCAGTGAGAACGGGTCCGAGCACAAATGCGACGTTTGCGGTAAGGTCTACAAGTACAGGTCGATGCTGAAGCAGCACAAAGTTAGGGCCCACGGTGACCCGTCGAACTACGAGAGGCGCAGATACCTTTGCGCACTATGCGGCAAGGAGCTGAAGACTGCGAAGGGCCTCGAAATCCACAACAGGTCGCATACCGGCGAAAAGCCGTACACCTGCGCGGTGTGCGGCAAGTGTTTCGCCTGTGAGACTCTGTTGAGGACTCACAATGTCACTCACACCGGAGAACGGAAATACTCGTGCGACCAATGCGGCAAAGCCTTTACACAGAGGTCTACCCTGGTTGTTCATAAGCGATATCACACGGGCGAACGACCGTACGTTTGTCCTCGATGCGGTAAGGGTTTCGTCACACGAACTGTCCTTAATACTCATATGAAGTCCTGTCGTTGA
Protein Sequence: MNIARHKLIHTGLKVFTCDLCEYSTNQKSNLECHRRRHAKDYSFKCETCGKGFFHRTEYLEHQNAHTNKSLYRCEHCCKHYLYKKNLSVHLMTHHAGKQAAAAARNAKTRHACKFCPERFVYKRLLKRHMKNQHGFADAPAKHLCDLCGAELSSMRRLTVHKRNHAGERVFECDTCDKRFASKENLSIHKRTHTGDKPHVCPQCGRGFTQRTSLVLHLRYHSGQRPYQCPDCGKGFVSNTLLKRHRKVHERAAQPKLQWTNNHDVKNEDLPDLGQKFEGGEKICELCQAKFHFVTRLVAHLRIAHGIHRPFKCITCDKNYPQQFMLNAHVKKSHTPKTVPCTQCSFMGVNVTDVERHRRRRHRVPKFTCEICSEDFADKDALIAHTTMHDFMQYQRCNACGSIFNDVYSLKEHNRLYHYDPASDEKFEESSENGSEHKCDVCGKVYKYRSMLKQHKVRAHGDPSNYERRRYLCALCGKELKTAKGLEIHNRSHTGEKPYTCAVCGKCFACETLLRTHNVTHTGERKYSCDQCGKAFTQRSTLVVHKRYHTGERPYVCPRCGKGFVTRTVLNTHMKSCR

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00869051;
90% Identity: iTF_01409381;
80% Identity: iTF_00129922;