Basic Information

Insect: Aphaenogaster picea
Gene Symbol: MBD-R2_1
Assembly: GCA_003063865.1
Location: NJRM01000392.1:22597-31694[-]

Transcription Factor Domain

TF Family: MBD
Domain: MBD domain
PFAM: PF01429
TF Group: Unclassified Structure
Description: The Methyl-CpG binding domain (MBD) binds to DNA that contains one or more symmetrically methylated CpGs [2]. DNA methylation in animals is associated with alterations in chromatin structure and silencing of gene expression. MBD has negligible non-specific affinity for DNA. In vitro foot-printing with MeCP2 showed the MBD can protect a 12 nucleotide region surrounding a methyl CpG pair [2]. MBDs are found in several Methyl-CpG binding proteins and also DNA demethylase [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 1 1.1e-17 6.9e-14 51.7 0.4 6 69 568 631 563 639 0.92

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	1	1.1e-17	6.9e-14	51.7	0.4	6	69	568	631	563	639	0.92

Sequence Information

Coding Sequence: ATGAAGCGGCGGCGTATACCGCGCTCGCGTGCCGAGGGGAGGGTATCGGCCGCCGTAAccgcggctgcggctgcggcgacggcggcggcgacggcggcggcgacggcaacggcgacagcgacggcggcggcgggggcgATGGGAATGGCGCGCAAATGCTGCGTGCGTAGCTGCAAGGCGGACGTGCGGGAGGCGCGCGCCAAGGGACTGCCGCTGCACAAGTTCCCCAAGGACGCCGCGCTGAGGGACAGGTGGTTGGCCAGCGGCGGCTTCGACGCGGGTTTCAGGCCGACGCCAGGCCAGGTCGTCTGCCATAGGCATTTCAAACGCGCCGACTACGAGGCAGCGCGGGGCGGTCACAAGCTCCTGCTCAAGAGAGGCAGCGTGCCCACGGTGTTCGCGGGCTATGACGATCATCCCGATCCAGTTATCATGTCAGTAAAGTCTTCTACATCTTATGCTCAAGAAGATTTGGACCTGATCAATTCGGAAATACTAAATTTGGAACATTCTGCTTCACCGTTATTATCCGAGGCGAGAACACCTAAATCTGACAGTTGTGGCGAGACGTGTTACTCTAGACCTGAATCGTCGGCAGACTCCTTAAATCTACCTGATAGCTCGGAAGTAACGGATAATGAATACAAAGCGATGATTCCGAAAGAAGAGAGCAAGATATCCGTGAAAGATAAATCGATCGAAAATTCGGATAATAAAGTGACTACTGTAGCGATGCAGCTTGGTATCGTCGAACCAGAAACAGCAATGAAGTCTGATGCCAAAGATCTAATGGTAaaggaagaattaaaattacCCGGCAACAAGGAATTTGACAAATCGGAAGAATTGAAACCAAAGGTTTTGAATCGCGGTGGCATGAAATTTTTTCCTGGTGCCAAATTGGAAGCAAAAGACTTTAATGAGAAGTGGTATTCTGCAAAAGTGGTAGAAACAGATTGGGATGAAAGGGAAGTTTTAATACACTTTGACAAGTGGAGCTCGAGATTTGATGAATGGATACCAATGGACAGCTCCAGACTTCGTGTATTGCAAACCCCACAAAACGAACAAGCTTGGATTCCGCCGTCTCCGGAAGCGAAGATGCGCGAGTTTTCCGTGGGAGAGCGAATACTCGCTACGTGGGCGGACGGAAAAAAATATCCAGCCAAAGTGAGCGCGGTCCTGACGAATGACAAGTATAACGTGCTGTTCGACGATGGATACGCGAAGGTCGTCAAGTCGTCGAAAATGACCAAGATCGCAGGAAATACAACCAAGCCGTTAAGCGAACTGGATGGGTATATTGGTAGCAAACAAGAAAGAAGGGATAAGAAACGGAAGCACACAGTTATGGAGTTGTTTAACACTCACTCAAGGAGACGTACAAAACACGATGCCGAGAAAACACCAAAGAAGGAGGAGACTGTCGTCAAGGAAAGCGGAGAAGGTTCTACAGAGAACAAGATCGAGGTGGACGGTACCCAATATGGTCCCTGTTATGATCCAGGGACAGATTTGTTAAAAGGCTTCGAAACTAATCCCTCAAAAATCAAATCGTATTCAAAGAAGAGCAAGAAGGAAGTGCCCAAGAACGATACAGATCTTGAGGAAAACGTTGGTCCCGAATGGATTGATGGAGAACCACAAGGAATAGAATCTTATATTGTAGATGGCAATGATGGACCACGCCGATCTATAATAGTATCAGACAAGAGATTACCTCCCGGTTGGGAAAAACACTTTACGCAAAGAAAAGCCGGCACGTCTGCTGGAAAATGGGACGTCTTGTTTATACAtaaacAGACCGGGAAGAAGTTCAGATCGAGAAATGACATCAGAGTGTTCATGGAGAACCAAGGGCAGTACGATTTCGACCCTGAAAAATTCGACTTCTGCATACATCGCAGGAAACGAAACCACACGCATCGCGTGAAACAGGAAGTTACGCCAGAAGTACCAAAGAAGATCAAAACTTTATTGCCTAAAACGAAAATGACCACACCTGAAAATGCATTACTTACTACGGGGACGAGCAGTATCGACACTCAACCTATCGCGTCGACGCCTACTACATCTAATACGGATGGTGccGTCTTTATTGGGCTTCGTGGTGGACTTCGTGTGGAAATGGAAGACAGCGCTTATAAATGTCCCAAGGAaggatgtaataaaaattttcgaaaagaaaatttGCTGCAGATGCATATCAAGCATTATCATCCTGAATATTCCAAGTTTCTGGGCTCTACTCCAAAAGTTGAAGATTTGGCTTACGCGAGAACGATCGGGGAATCTATAGAAGATATAATTCCCAAAAAACCAACATTCTTAGAGAAAATCAATAAATCCGCGAAAAAGAAATCTCTTCCTGAGAAATCACCGACTACTTTATTACAATCAACGCTAAACACTATGCAACCAACATCTCCGTCAATACCTGGTTCTGTAATGCCGGAAGAAGAGGAAATGGATCAATCAGAAAAGTGTAGTGATTCGCAGAAGGAGGATATGAAAATTGAAACAATGTCATCAATATCTAATCATAGTATGGAGATAGACGACGATATTGAAAAGAAGAGGGAAAATGTCTGCGCATTATCTCCTGGTACATTATTTGATATGAGAGTGAAAGAGGAAAGAGCGCAAGGTGGCATTAAAACTTTGTTGCCTGTAAGATCAGTTGCAACATCGGAGGTGCAAAAAGCCGATAAGGCAAAATCTTCGGATGAAATAGCGCACGGTGTAAAAAGTCAAAAGAGAAGACAACTTATCGAACCTAGTGTGGATTTGCCGGCTAAAACAAAGAAACGACATGGTATGTCAGATCTTACCGATAGTTTCGGTGATCTAGACGACAGTGCTATGGACGTCGAAGGACCTACGGCACTTATGTATAGATATAGTCGTAGGAAATCTGACTCAAAGAGCGACGAAAATAGCCAGAATAGTCAACTAAATGATTCACGCATTGAAAAAGCTGATCCCTTAAAAGGGGATGTAATCAAAacagatattaataatgatgcagaagAAAGCGAAGGAGTGATGATGATGATCAATGGCGAACTGGTAAAGGTAGAACAACTTCGaagagaagaaataataaattgcacatGTGGCTATATGGAAGAGGACGGTTTAATGATACAGTGCGATCTTTGTCTCTGCTGGCAACATGGTCATTGCAATTCGATTGAAAAGGAAAAGGATGTACctgaaaaatacatttgttacATATGCCAAAATCCATATAGACTACGGCCGtctaaaaaatactttaacgaTCAGGATTGGATTAAGGAAGGAAAATTGCTAAGCTTGTCTAATCGAACTCGGAATCAGTATATGATAAATCAAAGGACTGCAATGCTAAAGCGTTCTTATGACTTGGTTGCTGCACTGTTACAAGTGCAACAACTTCTTCACAGTCTACGCGTAAAAATCAACGTAGCACAaaaaaaagatcaTCCGAAATTATATCTTTGGGCTAAGAATTGGGAGAAAATGGATGTACCAAAGATAGATATGGAACCAGTACCAGTGATGGAAATAACTAAAGCAGGAAGTTTTACCGATACAGGTTCGGAGATTCCGCGACGTGTCGAGACGAAGGCGGATATCAAGTTGTCTATGAAAGACGATCAGGATGAAAAATCAATTGCTTCCGATTCGGAATTGATGAAAATTTTGGAAGAGGATAGCACACATTCTGATGAATCCAGAATTATCAGCAAGAAGGAAGGCTTGATAAATACGAAGGACAGTCATATACTTTTAGACGCGTTAACGAGTGGTAACTCGGACATAAAAGAGAAGAACATTGCTACATCAGATATTAAAACGGAGAGCGCAGATTTATTAGCTGATAAAACCATTATTGGTAATCCTGCATCTGAGAATCTTAATTCTGCATCGCTTATTGACAACGTCCAACGAGAATCGACTATAACCAACGTCGAAAACGAAGTCTCCGCACTTCCGCAGCCTTTTATACCAGAGCCCGAGGCGCCGATTGATCCAGCCGAATGCCGAATGCGATTGTTGGAACATATTGAGCATTTTCAATGTCACATTGATTCGAGATTAACGTCCATAGAAGCGCAAATTTTTGCTCTAGAGGCGATGGATCCGGATGAACTCGTATCGGATCCGCATGTTCAACCCCGTACTAAGCAAACGGTTCAGATGCTCCTTCGTGATTTGAACACGGTCCGGAAACTGGCAGCACTATGTTGA
Protein Sequence: MKRRRIPRSRAEGRVSAAVTAAAAAATAAATAAATATATATAAAGAMGMARKCCVRSCKADVREARAKGLPLHKFPKDAALRDRWLASGGFDAGFRPTPGQVVCHRHFKRADYEAARGGHKLLLKRGSVPTVFAGYDDHPDPVIMSVKSSTSYAQEDLDLINSEILNLEHSASPLLSEARTPKSDSCGETCYSRPESSADSLNLPDSSEVTDNEYKAMIPKEESKISVKDKSIENSDNKVTTVAMQLGIVEPETAMKSDAKDLMVKEELKLPGNKEFDKSEELKPKVLNRGGMKFFPGAKLEAKDFNEKWYSAKVVETDWDEREVLIHFDKWSSRFDEWIPMDSSRLRVLQTPQNEQAWIPPSPEAKMREFSVGERILATWADGKKYPAKVSAVLTNDKYNVLFDDGYAKVVKSSKMTKIAGNTTKPLSELDGYIGSKQERRDKKRKHTVMELFNTHSRRRTKHDAEKTPKKEETVVKESGEGSTENKIEVDGTQYGPCYDPGTDLLKGFETNPSKIKSYSKKSKKEVPKNDTDLEENVGPEWIDGEPQGIESYIVDGNDGPRRSIIVSDKRLPPGWEKHFTQRKAGTSAGKWDVLFIHKQTGKKFRSRNDIRVFMENQGQYDFDPEKFDFCIHRRKRNHTHRVKQEVTPEVPKKIKTLLPKTKMTTPENALLTTGTSSIDTQPIASTPTTSNTDGAVFIGLRGGLRVEMEDSAYKCPKEGCNKNFRKENLLQMHIKHYHPEYSKFLGSTPKVEDLAYARTIGESIEDIIPKKPTFLEKINKSAKKKSLPEKSPTTLLQSTLNTMQPTSPSIPGSVMPEEEEMDQSEKCSDSQKEDMKIETMSSISNHSMEIDDDIEKKRENVCALSPGTLFDMRVKEERAQGGIKTLLPVRSVATSEVQKADKAKSSDEIAHGVKSQKRRQLIEPSVDLPAKTKKRHGMSDLTDSFGDLDDSAMDVEGPTALMYRYSRRKSDSKSDENSQNSQLNDSRIEKADPLKGDVIKTDINNDAEESEGVMMMINGELVKVEQLRREEIINCTCGYMEEDGLMIQCDLCLCWQHGHCNSIEKEKDVPEKYICYICQNPYRLRPSKKYFNDQDWIKEGKLLSLSNRTRNQYMINQRTAMLKRSYDLVAALLQVQQLLHSLRVKINVAQKKDHPKLYLWAKNWEKMDVPKIDMEPVPVMEITKAGSFTDTGSEIPRRVETKADIKLSMKDDQDEKSIASDSELMKILEEDSTHSDESRIISKKEGLINTKDSHILLDALTSGNSDIKEKNIATSDIKTESADLLADKTIIGNPASENLNSASLIDNVQRESTITNVENEVSALPQPFIPEPEAPIDPAECRMRLLEHIEHFQCHIDSRLTSIEAQIFALEAMDPDELVSDPHVQPRTKQTVQMLLRDLNTVRKLAALC

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00730116;
90% Identity: iTF_00127524; iTF_00125925; iTF_00128199; iTF_00129743; iTF_00129810; iTF_00128278; iTF_00129046; iTF_00126713; iTF_00126777; iTF_00126010; iTF_00127456;
80% Identity: iTF_00129046;