Amia022497.1
Basic Information
- Insect
- Aphaenogaster miamiana
- Gene Symbol
- -
- Assembly
- GCA_003063725.1
- Location
- NJRN01000045.1:417020-426407[-]
Transcription Factor Domain
- TF Family
- zf-LITAF-like
- Domain
- zf-LITAF-like domain
- PFAM
- PF10601
- TF Group
- Zinc-Coordinating Group
- Description
- Members of this family display a conserved zinc ribbon structure [3] with the motif C-XX-C- separated from the more C-terminal HX-C(P)X-C-X4-G-R motif by a variable region of usually 25-30 (hydrophobic) residues. Although it belongs to one of the zinc finger's fold groups (zinc ribbon), this particular domain was first identified in LPS-induced tumour necrosis alpha factor (LITAF) which is produced in mammalian cells after being challenged with lipopolysaccharide (LPS)[2]. The hydrophobic region probably inserts into the membrane rather than traversing it. Such an insertion brings together the N- and C-terminal C-XX-C motifs to form a compact Zn2+-binding structure [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 3 0.083 4.1e+02 1.7 0.1 6 19 10 23 5 34 0.66 2 3 1.4e-12 7.1e-09 36.2 0.2 6 53 93 140 89 144 0.94 3 3 3.1e-14 1.6e-10 41.5 2.8 4 68 218 281 215 283 0.88
Sequence Information
- Coding Sequence
- ATGATAGAGGAGAAGtcATATATAGCGACCTGGTGCCCAGTATGTGACAAGCAAGTAAGCGTCGAGGAACGAGACACGTACAAACTTCTCACACATATTCGTAAATATCATCCCGAGATCGCTGGCAAATGTTTGAACAATCAAAAGAACGGGGGGTTAAGGATATCGTCGAATCGGATTTCTTCGGTCACGCCAGTCGATAGTAGTAGCAAGAAGAACGAGCCGAAGAAAGTTTACTCTACTCGTGTGGACACGTGGAAATTGCACGGCGAGAGGAAAGTCTGCCCCCAATGCCAGAGGGAAGCTGCGCCGACGCTTCATACGCGCGACGACAAACTGACGCCCTCGCATATCGGAGCCCTCTGCCTTTTCGGATGTTGGCCGTTTTGCTTTATTCCGTTAATGATGAAGCGCGCGAAGAGAGAGGGTTCGCATGATCTGTCCGTTGTGCGGCCACGTTTACGGCACCTTCGAAAAGCAGCGCGCTTTTGTAAATCACAAAGGGCGGAATGCAAGCGGAGCGGGCCGTCGCAAAGTGGCATGTTGCTCCCGTGGATTCCGACACTGAGAGCGCCTGATGGTAAAGCTCGCGCGCCGAAACGACCGAACAATGTCTTCTCCACGGAAGtTGAAACTTGGAAATATCACGACAAATCAATTCGTTGTCCTGCGTGTGGCGTAAAGGAGGCACCGATAATACTGAAACAGCAGAAATTCACGAGTTCCCGGCTGGCTGCATTTTGCTTAATGGGATGCTGGCCCTTTTGCTTCATACCGTTGTTGATGAGACGGGACAAAAGCGTACGAACGCTGTGTCCGCGTTGCGGCCACGATTACGGGATTCATATACGAGCAGAGAGCGAGCTGATCGCCTGTTCGTCCAAATGCACGTCTAGCCGCGAGAATTTGAGCGATTTCGCAAATTCACGACCGTGTCATCTTCGGGCGAAGTGCGACGGCTCGCGAGTGCAACTGGGACATCGCCAGAAAACACTTTCCATGGGTGACGAGGCCGCGAGAGCTCTCAGGGTCTCAGAGGAGCGTCCTCGGCGAGGAGAAGAAGGCGGATCTCGTTGCTGCCGGTCGCAATCGAAGCTATCGCGCGGATACGCCTTTTGTGCGAACCAGGTCACGAATCGTGGTTCGCCGTATGACGAGTATAGCAGCGACGATTGCTTGGACAAAGGATGGGATCGCCGGCACGACTTGGACGAATCGAAAGCTCCGAAAGCACGAGAACGAAGCGAATCCGAAGGCAGCACGGGGACGGCGGCGGTCGATTTTTATGCGAGACAGGTTTGCTGTCGGGAGTATGGCTAG
- Protein Sequence
- MIEEKSYIATWCPVCDKQVSVEERDTYKLLTHIRKYHPEIAGKCLNNQKNGGLRISSNRISSVTPVDSSSKKNEPKKVYSTRVDTWKLHGERKVCPQCQREAAPTLHTRDDKLTPSHIGALCLFGCWPFCFIPLMMKRAKREGSHDLSVVRPRLRHLRKAARFCKSQRAECKRSGPSQSGMLLPWIPTLRAPDGKARAPKRPNNVFSTEVETWKYHDKSIRCPACGVKEAPIILKQQKFTSSRLAAFCLMGCWPFCFIPLLMRRDKSVRTLCPRCGHDYGIHIRAESELIACSSKCTSSRENLSDFANSRPCHLRAKCDGSRVQLGHRQKTLSMGDEAARALRVSEERPRRGEEGGSRCCRSQSKLSRGYAFCANQVTNRGSPYDEYSSDDCLDKGWDRRHDLDESKAPKARERSESEGSTGTAAVDFYARQVCCREYG
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00127860;
- 90% Identity
- iTF_00126379; iTF_00130157; iTF_00129408; iTF_00127860; iTF_00127128;
- 80% Identity
- -