Amia019634.1
Basic Information
- Insect
- Aphaenogaster miamiana
- Gene Symbol
- prdm10
- Assembly
- GCA_003063725.1
- Location
- NJRN01000050.1:16469-28110[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 10 0.00059 0.067 14.1 0.1 2 23 524 545 523 545 0.95 2 10 0.0012 0.13 13.2 0.1 3 23 559 579 558 579 0.96 3 10 0.015 1.7 9.7 3.3 1 19 596 614 596 618 0.93 4 10 0.00033 0.037 14.9 0.3 2 23 627 648 626 648 0.97 5 10 0.0039 0.45 11.5 0.3 1 23 655 677 655 677 0.98 6 10 0.00077 0.087 13.8 4.2 1 23 684 706 684 707 0.95 7 10 0.0021 0.24 12.4 4.6 1 23 712 734 712 734 0.98 8 10 3e-05 0.0034 18.2 5.9 1 23 740 763 740 764 0.95 9 10 0.0015 0.17 12.8 1.7 1 23 796 819 796 819 0.97 10 10 0.0034 0.39 11.7 3.4 3 23 892 913 892 913 0.98
Sequence Information
- Coding Sequence
- ATGGATCCAAGGGGCCCTCCTGAGGGGGCCCCTGCCGAGTCCTTCGAGATATCCAGCATCGACAGGGGGGCTGACACCTCAGTGAATTGGCCTACGGATCACCCCTTCGCCTCGTCCCTGTGCGAACAGCCGAAGAAGTTGAACAACAGGCTCTTGTTCTTAACTGTGGAATATGTGGAAGATCAATCTCGGCTGTTCCCCACATATGAACAGATCTCCTTCTCTCCGAGGGCAGCCTCCCCTCTATCCGAGTTTGAGCATCGAGTCAGTCCGCTGGATCCAAATATGAGCTCCGCCGCTAGATACTCTCCCACGCCGGTCCAACTGCCTTCCTCTCCTTTCCACAACTCCGTTGTCGTGCTTCAAGGCCCGTCCTCGCCCTTGATGTCCCAGCCCGAACCAAACATACGAACGAGCATCAATTATGTGACTCAGCTGGCTCATCCGATCGACACTCAGACCGTACCTCAAACAGACGCTACCACAGACTTTGTTGGCAATGGGAACGAAGATGGGCTAGTGTCCAGCGTTAGCAGCGAATTGATTTTAATGCAGGAAACTGCACCAGAGTTGGAATCTTCGGCGACTCCCTTAATGCTAACAGGAATACCAGGCACAGACTTCACTCTGACCAGAGATTTCTTGGTGATGCAGGATGATCAAATAAACGTTATCAACACGTTTAAAAATCAGAACATAGAGATGGAGGACAACCCTATCGCTTTACCATCCATTACCGAAGATGCAAACAAAGAAAACAACAATCTTGCTTTGCCAGAGTGTGATAAAGAAATTCAACAAATTACCAAAGATTCACTATCCATTGAGAAGAAAAAAGTAGtggagaaaaaagatataaggAGGTCCAAACGACATATAacagataaaaaagatttctGGTGCGACGACGAATATGACAGTAATTGTGCCAAAGACGATACCTCTAATTTGACCGATGTATGCACAATCGCAGATCAACCTGTACCATCGCGTGCTGTAGCAACACTGCCAGGATCATATCTTTTGTTAAACAAGCTATCTACTTCGCATGCTGCAGCGAATAGCATGACCTATGGGGTTTTTGCGAAACGTAATATTCGAAGACGTACGCAATTTGGGCCCATAGAAGGTGTATTGTGCGCTTATGACGGCTCGTCCTTCGAGAATGCTTTGCCACTACTCTATGAAACTGAGAATGGGGAATTCTTGAAAGTAGATGTTTCCAACGAAAACACTTCAAACTGGATGCGTTTTGTGCGGCCCGCACTGACATATAAGGagcaaaatttgattatttgtcAGCAGAAAGATGGAATAGTGTTTTTGACTAATAGAAACATCTCGCCAAAAGAAGAGCTAAAGGCAGGTCCTAGTCCAGACTATGCAAGTCGCAGAAATTTGCCAATACTTAAACCAGACGCAAAAGATGAAAAAGcagAAATAACTAATCAAATATCTACATGGCCACGTTTCGATGGTAATTCTTATAATCGACGTATAAAGATGTTTCGCGACAGAAACATGAAAGAAAAGGAGAACTCGCGCCAGAACAAGTGCGACAAGGAATGGAAATGTTCCGTGTGCAATTTGATTTTCAGAAAGCCATCCCTGCTTAACTTACACGCAGCCGTTCATTCTTCTAACGATATCAAAATTGAGAATCAAATGTCCGCATGCCCGCAGTGTGGATTGGAATTTCAGAAGCAAAGCGAATTGGTGAATCATGTGTCTCAGCACGGGCGAACGGCGTTACCTAAGGCAAAGAGATTAACTCCTCTAGGTTCATACAAGTGTTCAATGTGTTATAAACGTTTTGCTACGAAGATACGGTTACAACAGCACTGCTTGGCTCATGGTGCTGAGGACCAAAAACCACTGCCATGCAGTATCTGCTTGAAACGATTTATGAACAACTCTGCGTTATCCGGTCATCTGAAAACGCATAAAGAAAACAAACAGGTCTTTGAGTGCCCAATGTGCAGGCAGCTATTTCGTCAAGGTACGATGCTGAAGGATCACGTTGAGACACACAAAAATCAAGACGGTATATTCAGTTGCCCTCACTGCCAGCGTACATTCATTAAGTATTCGGTCATTCGCAAACACATTCGGGCACATCATTGCGAAAGGAAGCACAAGTGTCAGCATTGCGCAAAACGTTTCCCGACGGTCGACAAATTGCGAATGCATCTGCTGAAACACTCCGATCACAGAGAATTTCATTGCGCGAACTGCGGTAAACGGTTCAAAAGGAAGGATAAATTGAAGGAGCATATGACTAAAATACATCATTCCCAAACGGTTAATGGAGAACAAATAACACAGAACAACCAGGCGAAAAAATTTGTGCCAAAGgtaAATCCGAACGATTACAATCGCTTCATTTACAAATGTCATCAATGCCTGGTGGGTTTCAAGCGAAGGGGAATGCTGGTGAATCACCTAGCGAAGCGACATCCTGATGTTGCTCCCGAATCTGTACCGGAATTGAACTTACCCATTCTGCGACAAACCAGAGACTACTATTGCCACAAGCGTAAAGCGCATATCATGAAGAACCATCCTGGCGCGGCCTTGCCGCCTAGTAACCGGCAAAAGGAGTCCGAATTCTCAGGACTGCCAAATCCAAGCTTTAGCCAGACAGTGGGCAGCATCACGACTAGTCCTCAAGGTTGCCAGTGGTGTCATAAACAGTACGCCAGCaagGCAAAGCTCTTGCAACATCAACGCAAGAAGCACGCGCACCTGATGGAGCCGGCGGATCAAATACCGCGATCGCGAAACCGGCCGCCGCAAAATCAAAATCAACCACCCACGCTGAACGATAACAACTTTGTGATATCCGATTATATACAAGGATGCGACGGGGATTTCCTGAAGcagaaaataatcaaaataacgAGCGACGTTGATCTGATAGGCAACGGAGGTCTGGAGATGATCGGTCAGCAGTTTGTGCGTATGCGCGACATACGTTGA
- Protein Sequence
- MDPRGPPEGAPAESFEISSIDRGADTSVNWPTDHPFASSLCEQPKKLNNRLLFLTVEYVEDQSRLFPTYEQISFSPRAASPLSEFEHRVSPLDPNMSSAARYSPTPVQLPSSPFHNSVVVLQGPSSPLMSQPEPNIRTSINYVTQLAHPIDTQTVPQTDATTDFVGNGNEDGLVSSVSSELILMQETAPELESSATPLMLTGIPGTDFTLTRDFLVMQDDQINVINTFKNQNIEMEDNPIALPSITEDANKENNNLALPECDKEIQQITKDSLSIEKKKVVEKKDIRRSKRHITDKKDFWCDDEYDSNCAKDDTSNLTDVCTIADQPVPSRAVATLPGSYLLLNKLSTSHAAANSMTYGVFAKRNIRRRTQFGPIEGVLCAYDGSSFENALPLLYETENGEFLKVDVSNENTSNWMRFVRPALTYKEQNLIICQQKDGIVFLTNRNISPKEELKAGPSPDYASRRNLPILKPDAKDEKAEITNQISTWPRFDGNSYNRRIKMFRDRNMKEKENSRQNKCDKEWKCSVCNLIFRKPSLLNLHAAVHSSNDIKIENQMSACPQCGLEFQKQSELVNHVSQHGRTALPKAKRLTPLGSYKCSMCYKRFATKIRLQQHCLAHGAEDQKPLPCSICLKRFMNNSALSGHLKTHKENKQVFECPMCRQLFRQGTMLKDHVETHKNQDGIFSCPHCQRTFIKYSVIRKHIRAHHCERKHKCQHCAKRFPTVDKLRMHLLKHSDHREFHCANCGKRFKRKDKLKEHMTKIHHSQTVNGEQITQNNQAKKFVPKVNPNDYNRFIYKCHQCLVGFKRRGMLVNHLAKRHPDVAPESVPELNLPILRQTRDYYCHKRKAHIMKNHPGAALPPSNRQKESEFSGLPNPSFSQTVGSITTSPQGCQWCHKQYASKAKLLQHQRKKHAHLMEPADQIPRSRNRPPQNQNQPPTLNDNNFVISDYIQGCDGDFLKQKIIKITSDVDLIGNGGLEMIGQQFVRMRDIR
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00885376;
- 90% Identity
- iTF_01523591;
- 80% Identity
- -