Basic Information

Insect: Aphaenogaster miamiana
Gene Symbol: -
Assembly: GCA_003063725.1
Location: NJRN01000054.1:8473-12072[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 14 3.4e-06 0.00038 21.2 0.7 1 23 107 129 107 129 0.98

2 14 9.3e-08 1.1e-05 26.1 0.1 1 23 135 158 135 158 0.95

3 14 0.014 1.6 9.8 0.6 1 23 164 186 164 186 0.97

4 14 1.3e-05 0.0014 19.4 3.9 1 23 192 214 192 214 0.96

5 14 0.0001 0.012 16.5 1.6 1 23 220 242 220 242 0.96

6 14 0.00025 0.028 15.3 3.0 1 23 248 270 248 270 0.96

7 14 0.00078 0.089 13.7 2.6 1 19 276 294 276 299 0.94

8 14 0.00024 0.027 15.4 1.8 2 23 451 472 450 472 0.97

9 14 0.00021 0.023 15.6 2.8 1 23 478 501 478 501 0.96

10 14 2e-05 0.0023 18.8 0.7 1 23 507 529 507 529 0.98

11 14 1.5e-06 0.00018 22.3 3.6 1 23 535 557 535 557 0.98

12 14 0.2 23 6.2 2.2 1 23 563 585 563 585 0.87

13 14 5.7e-06 0.00065 20.5 1.0 1 23 591 613 591 613 0.98

14 14 8.7e-05 0.0099 16.7 0.5 1 21 619 639 619 640 0.95

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	14	3.4e-06	0.00038	21.2	0.7	1	23	107	129	107	129	0.98
2	14	9.3e-08	1.1e-05	26.1	0.1	1	23	135	158	135	158	0.95
3	14	0.014	1.6	9.8	0.6	1	23	164	186	164	186	0.97
4	14	1.3e-05	0.0014	19.4	3.9	1	23	192	214	192	214	0.96
5	14	0.0001	0.012	16.5	1.6	1	23	220	242	220	242	0.96
6	14	0.00025	0.028	15.3	3.0	1	23	248	270	248	270	0.96
7	14	0.00078	0.089	13.7	2.6	1	19	276	294	276	299	0.94
8	14	0.00024	0.027	15.4	1.8	2	23	451	472	450	472	0.97
9	14	0.00021	0.023	15.6	2.8	1	23	478	501	478	501	0.96
10	14	2e-05	0.0023	18.8	0.7	1	23	507	529	507	529	0.98
11	14	1.5e-06	0.00018	22.3	3.6	1	23	535	557	535	557	0.98
12	14	0.2	23	6.2	2.2	1	23	563	585	563	585	0.87
13	14	5.7e-06	0.00065	20.5	1.0	1	23	591	613	591	613	0.98
14	14	8.7e-05	0.0099	16.7	0.5	1	21	619	639	619	640	0.95

Sequence Information

Coding Sequence: ATGCGTCGAGTGTCGGAAGACAAGTCGAAGAAACACGCACGAATCAGCTCACCAAGGAACGAGCAGTCCGTTGTAGAAAGATACATTAATATTCGGAAAGCTCGATCAATGTCCAGCAAGAAATCATCGACGCATCTTGGTGATTTGGACAAAAGATTGGAAAAAGACTATTCGGCAGATTCTCATGCGGACAACTCTGAGCAAACGCAGAAGCCTCAAGAGAAACACACGGTGGATTCTCGAGGATGTATAGAACAATCGGAACAACACGTCGAATTAACTCACTCGAAGACGACGGAGGGTAATGGATACGCCTCTCATAAGTGTGGCGAGTGCGGGAAAGTTCTTTCCACGTCGTACAATCTGCTAATTCACCGCAACATTCATGCTGGCGTACGACCCTATATCTGTCCCGTTTGCGACAAGAGCTTCCGATCGGCGTCCGGTCTGAACAGACACGTGCGTGACGTCCACGACGGCGTTAAAAATTTCGCCTGCGACGTTTGCGGCCGTCATCTCGCCTCGAGGGCGTCGAGGGACGAGCACAGACGCACACACTCCGGCGAGAGGCCCCACGTGTGCGAGACCTGCGGCAAGTCTTTCAAGCAGAAGGCGTCCTTGCACGTGCACCGGCTCTACCATTCCCAGGTCCTGCCGCACCGTTGCGATCTGTGCGACCGCGGTTTTAGGAGGAAACAGGAATTGGACAAGCACGTGTCCTGGCACTCCAATCGAAAGCCGCATGCCTGCGATATTTGCAACGAGCGTTTCCGCAGCAAAGGCTGCGTCGCTCGTCATCGGCGCATTCATACCGATCAGCGATCGCACGTTTGCACGATCTGCGGCGCCAGGTTCACTCAGGAGCGATATCTGAAGAGACACTGTGGGAGTTTACATCCGGCTGTACACACattaaagAATCACACTGTCACCCACGATCGAATAATGGCCCACAGTTATTTCCGCCAAGAGTATAAGGTGGGAGAGCGTAGAAGTAAAATCAATCCAATCCAAACTAAAATGTCCAATATAATCGACGGAGGTTCAGAGAATATTTCTTTTACGGATAATACTCGTAACGATAAATCAACCGAACGTTTGTCTCCCACAAACACATCTCCTAAAGTATTCTCATCAGATAAATTGACAAATGACAAAAGGAAGACAAATATAGAAGACAAAGGTTCTAATCCTGCTAGTCAAACGCAAGCAAGTTGCACAAAAAGGACAAAGGCCATGCGGTATACGCGGCAGGAACCTGCAGCGGAAGTGAACGAGTCTAATGAATATCTGGAGAAGAACGTCAAGCAATCCAAGTCCAAAAAGGCTGCTTGCACCAGCCTAGCGATGGTCTGCAAATTTTGTAATAAGAAGTTTCGCTTGCGAAAAAGTTATTGGGCCCACGTACGCATGCACTCGGGCGAGAAATCGTACACGTGCCACATTTGCGGGAAGCAATTCGTCCAGGGAGGAAGTCTATATTATCACCTGAAGCACGTGCACGACGGCGTGAAGAATCACACCTGCGACATATGCGGCCGCAGCTTCGCTATGAAGACTGCCATGGAGGACCATCGGCGTATCCATACCGGTGAACGCCCATATGTGTGCCACACTTGTGGCAAGACTTTCAAGACCAAGGCGTCGCTCTACATACACAGCAAGACCCATACGGACGAGTTCCCGCACAAGTGCACCTATTGTGCCAAGAGGTTCCGCTGGAGACAGCAGATGCTGGGTCACTTGACGGTGCATACAGGTGAGAAGAATCACACGTGCGATGTATGTGGCAAGGGTTTTGGTGTGAAGAACGACCTGACCAGGCACAAACGCGTCCACTCCGAGGAGAAGCCGTACACGTGCCAGCAATGCGGCATCAGCTTCGGCCAGAAACGTTATCTCAAAAGTCACGAACGCTTAAAGTTAGGAACCTGCGGGTACTCGCAAAGTTCAAGTCGAATTGAATCCGATTAA
Protein Sequence: MRRVSEDKSKKHARISSPRNEQSVVERYINIRKARSMSSKKSSTHLGDLDKRLEKDYSADSHADNSEQTQKPQEKHTVDSRGCIEQSEQHVELTHSKTTEGNGYASHKCGECGKVLSTSYNLLIHRNIHAGVRPYICPVCDKSFRSASGLNRHVRDVHDGVKNFACDVCGRHLASRASRDEHRRTHSGERPHVCETCGKSFKQKASLHVHRLYHSQVLPHRCDLCDRGFRRKQELDKHVSWHSNRKPHACDICNERFRSKGCVARHRRIHTDQRSHVCTICGARFTQERYLKRHCGSLHPAVHTLKNHTVTHDRIMAHSYFRQEYKVGERRSKINPIQTKMSNIIDGGSENISFTDNTRNDKSTERLSPTNTSPKVFSSDKLTNDKRKTNIEDKGSNPASQTQASCTKRTKAMRYTRQEPAAEVNESNEYLEKNVKQSKSKKAACTSLAMVCKFCNKKFRLRKSYWAHVRMHSGEKSYTCHICGKQFVQGGSLYYHLKHVHDGVKNHTCDICGRSFAMKTAMEDHRRIHTGERPYVCHTCGKTFKTKASLYIHSKTHTDEFPHKCTYCAKRFRWRQQMLGHLTVHTGEKNHTCDVCGKGFGVKNDLTRHKRVHSEEKPYTCQQCGISFGQKRYLKSHERLKLGTCGYSQSSSRIESD

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00129182;
90% Identity: iTF_00126907;
80% Identity: -