Amia024822.1
Basic Information
- Insect
- Aphaenogaster miamiana
- Gene Symbol
- -
- Assembly
- GCA_003063725.1
- Location
- NJRN01000018.1:919557-922743[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 20 0.0049 0.55 11.2 3.8 1 23 21 44 21 44 0.96 2 20 2.9e-05 0.0033 18.2 0.5 1 23 50 72 50 72 0.97 3 20 0.0038 0.43 11.6 4.4 1 23 78 100 78 100 0.98 4 20 0.00023 0.026 15.4 2.5 1 23 106 128 106 128 0.98 5 20 8.1 9.2e+02 1.1 11.0 1 23 134 156 134 157 0.96 6 20 9.4e-05 0.011 16.6 3.5 1 23 173 196 173 196 0.95 7 20 0.25 28 5.9 1.0 3 23 207 227 205 227 0.95 8 20 4e-07 4.5e-05 24.1 1.2 1 23 233 255 233 255 0.98 9 20 3.2e-06 0.00037 21.2 1.1 1 23 261 283 261 283 0.97 10 20 2.7e-08 3.1e-06 27.8 0.5 1 23 289 311 289 311 0.99 11 20 0.44 50 5.1 0.4 3 23 346 367 345 367 0.96 12 20 0.0021 0.24 12.4 1.0 1 23 373 396 373 396 0.96 13 20 0.49 55 5.0 0.3 2 23 402 424 401 424 0.95 14 20 5.4e-05 0.0062 17.4 0.0 1 23 429 451 429 451 0.98 15 20 0.037 4.2 8.5 0.3 2 23 458 480 457 480 0.94 16 20 1.7e-05 0.0019 19.0 2.2 1 23 499 522 499 522 0.93 17 20 0.0021 0.24 12.4 0.1 1 23 533 555 533 555 0.95 18 20 0.019 2.2 9.4 3.2 1 23 561 583 561 583 0.94 19 20 5e-07 5.7e-05 23.8 1.1 1 23 589 611 589 611 0.98 20 20 1.8e-05 0.002 18.9 0.1 1 21 617 637 617 638 0.96
Sequence Information
- Coding Sequence
- ATGCGTATTTCTTTACTCTTCCCTTCTTTCAGGCAACGACGGGGTAGATCGCGCGCCGTGCACCAATGCGTCAAATGCGGGGCTCGCTTCCGTCACACGCGGAAGCTTGTGGAGCACTTGAAGAACCTGCACAATATCGACCGGGCGTTCAGCTGCGACGAGTGTAGCAAGACATTTCGCAGCCCGATGAACATAGCTCGCCACAAACTGATTCACACGGGGTTGAAGGTGTTTACCTGCGATCTCTGCGAATACAGCACTAACCAAAAGTCCAATCTGGAATGCCATCGTCGACGGCACGCGAAAGACTATAGCTTCAAGTGCGAGACGTGCGGCAAGGGCTTCTTCCACAGGACTGAATACCTGGAGCATCAGAACGCGCACACGAACAAGAGCCTGTATCGCTGCGAGCATTGCTGTAAGCATTACTTGTACAAGAAGAACCTGTCGGTGCACCTGATGACACATCACGCCGGCAAACAGGCCGCTGCGGCCGCGAGGAACGCGAAGACGAGGCACGCATGCAAGTTCTGCCCGGAGAGATTCGTGTACAAGAGGCTGCTGAAGAGGCACATGAAGAATCAACACGGTTTCGCGGACGCGCCAGCGAAGCACCTGTGCGATCTGTGCGGCGCGGAACTGTCGTCGATGAGACGACTGACGGTGCACAAACGCAATCACGCGGGCGAGAGGGTCTTCGAGTGCGATACGTGCGACAAGAGGTTCGCCAGCAAGGAGAACCTGAGCATCCACAAGCGGACGCACACAGGCGACAAACCGCATGTGTGTCCGCAGTGCGGCCGCGGTTTCACGCAGAGGACTTCTTTGGTCCTGCATCTGCGGTATCACTCGGGTCAGAGGCCTTATCAGTGCCCGGATTGTGGCAAGGGGTTCGTGTCCAACACCTTACTCAAGAGGCATCGTAAAGTGCACGAGAGGGCCGCGCAACCGAAGCTCCAGTGGACGAATAATCACGATGTGAAGAACGAGGATCTACCTGATCTTGGACAAAAATTCGAAGGTGGTGAGAAGATCTGCGAGCTGTGCCAGGCGAAATTCCACTTCGTCACCAGACTGGTCGCGCACCTGAGAATAGCACACGGCATCCATCGGCCCTTCAAATGCATCACCTGCGACAAGAATTACCCTCAGCAGTTTATGCTTAACGCCCACGTGAAGAAGTCGCACACACCGAAGACTGTGCCGTGCACCCAGTGCAGCTTCATGGGTGTGAACGTGACCGACGTGGAGAGGCACAGACGGCGACGTCACCGAGTCCCGAAATTCACGTGTGAGATTTGCAGCGAGGATTTCGCCGACAAGGACGCTCTGATCGCGCACACGACGATGCACGACTTCATGCAATATCAGCGATGCAACGCGTGCGGTAGCATCTTCAACGACGTGTACAGCTTGAAGGAACACAATCGTCTCTACCACTACGATCCTGCGTCGGACGAGAAATTTGAAGAGTCCAGTGAGAACGGGTCCGAGCACAAATGCGACGTTTGCGGTAAGGTCTACAAGTACAGGTCGATGCTGAAGCAGCACAAAGTTAGGGCCCACGGTGACCCGTCGAACTACGAGAGGCGCAGATACCTTTGCGCACTATGCGGCAAGGAGCTGAAGACTGCGAAGGGCCTCGAAATCCACAACAGGTCGCATACCGGCGAAAAGCCGTACACCTGCGCGGTGTGCGGCAAGTGTTTCGCCTGTGAGACTCTGTTGAGGACTCACAATGTCACTCACACCGGAGAACGGAAATACTCGTGCGACCAATGCGGCAAAGCCTTTACACAGAGGTCCACCCTGGTTGTTCATAAGCGATATCACACGGGCGAACGACCGTACGTTTGTCCTCGATGCGGTAAGGGTTTCGTCACACGAACTGTCCTTAATACTCATATGAAGTCCTGTCGTTGA
- Protein Sequence
- MRISLLFPSFRQRRGRSRAVHQCVKCGARFRHTRKLVEHLKNLHNIDRAFSCDECSKTFRSPMNIARHKLIHTGLKVFTCDLCEYSTNQKSNLECHRRRHAKDYSFKCETCGKGFFHRTEYLEHQNAHTNKSLYRCEHCCKHYLYKKNLSVHLMTHHAGKQAAAAARNAKTRHACKFCPERFVYKRLLKRHMKNQHGFADAPAKHLCDLCGAELSSMRRLTVHKRNHAGERVFECDTCDKRFASKENLSIHKRTHTGDKPHVCPQCGRGFTQRTSLVLHLRYHSGQRPYQCPDCGKGFVSNTLLKRHRKVHERAAQPKLQWTNNHDVKNEDLPDLGQKFEGGEKICELCQAKFHFVTRLVAHLRIAHGIHRPFKCITCDKNYPQQFMLNAHVKKSHTPKTVPCTQCSFMGVNVTDVERHRRRRHRVPKFTCEICSEDFADKDALIAHTTMHDFMQYQRCNACGSIFNDVYSLKEHNRLYHYDPASDEKFEESSENGSEHKCDVCGKVYKYRSMLKQHKVRAHGDPSNYERRRYLCALCGKELKTAKGLEIHNRSHTGEKPYTCAVCGKCFACETLLRTHNVTHTGERKYSCDQCGKAFTQRSTLVVHKRYHTGERPYVCPRCGKGFVTRTVLNTHMKSCR
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00869051;
- 90% Identity
- iTF_01409381;
- 80% Identity
- iTF_00129922;