Basic Information

Insect: Aphaenogaster floridana
Gene Symbol: -
Assembly: GCA_003063835.1
Location: NJRP01000077.1:891525-895616[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 14 4.2 4.8e+02 2.0 1.5 1 14 217 230 217 231 0.87

2 14 0.0078 0.9 10.6 1.5 1 23 304 327 304 327 0.94

3 14 0.98 1.1e+02 4.0 0.7 5 23 334 353 333 353 0.94

4 14 0.57 66 4.7 0.3 2 23 359 380 358 380 0.96

5 14 2.6 3e+02 2.7 0.2 1 20 407 424 407 425 0.80

6 14 1.7e-05 0.002 18.9 0.2 1 22 561 582 561 582 0.96

7 14 7.2e-05 0.0084 17.0 0.1 3 23 590 611 588 611 0.92

8 14 0.2 23 6.1 0.2 3 21 673 691 672 692 0.92

9 14 0.048 5.6 8.1 5.8 1 23 733 756 733 756 0.92

10 14 0.1 12 7.0 3.0 1 20 803 822 803 823 0.95

11 14 0.028 3.3 8.8 5.4 1 23 831 854 831 854 0.96

12 14 0.012 1.4 10.0 0.5 1 23 929 952 929 952 0.92

13 14 0.079 9.2 7.4 0.3 1 23 1203 1226 1203 1226 0.96

14 14 0.0027 0.31 12.0 0.4 2 23 1250 1272 1249 1272 0.95

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	14	4.2	4.8e+02	2.0	1.5	1	14	217	230	217	231	0.87
2	14	0.0078	0.9	10.6	1.5	1	23	304	327	304	327	0.94
3	14	0.98	1.1e+02	4.0	0.7	5	23	334	353	333	353	0.94
4	14	0.57	66	4.7	0.3	2	23	359	380	358	380	0.96
5	14	2.6	3e+02	2.7	0.2	1	20	407	424	407	425	0.80
6	14	1.7e-05	0.002	18.9	0.2	1	22	561	582	561	582	0.96
7	14	7.2e-05	0.0084	17.0	0.1	3	23	590	611	588	611	0.92
8	14	0.2	23	6.1	0.2	3	21	673	691	672	692	0.92
9	14	0.048	5.6	8.1	5.8	1	23	733	756	733	756	0.92
10	14	0.1	12	7.0	3.0	1	20	803	822	803	823	0.95
11	14	0.028	3.3	8.8	5.4	1	23	831	854	831	854	0.96
12	14	0.012	1.4	10.0	0.5	1	23	929	952	929	952	0.92
13	14	0.079	9.2	7.4	0.3	1	23	1203	1226	1203	1226	0.96
14	14	0.0027	0.31	12.0	0.4	2	23	1250	1272	1249	1272	0.95

Sequence Information

Coding Sequence: ATGGATTCTGAAAAATCAAGGATTGAAAAATCATTCAGTAATGAAATGCCGCCAACTAAAAAATTACGGCAACCAACATTAACGGAATACCTTgaactttgcaaaaaaaaacatgaTATTAAACTCAgtccaaataaattaaatattatgaaaaatgatttGCCTACGTGTGGTTTACACCATGGTGGACAAATAGAAGGAAATTCAAGGCTTTCAGAAGAACATAATGGACAAATTGATTCTTTACCTACAACATCAGATAATCTCCCAAAACAAATAGCACCTTCTATTCCAGAACAAAGTGTAAAACATGAAATATGTTCTAAAAAGCCATTTGTAAGACTACATGCGGATGTTGAAATGATGAAATCTTTTCTGGACAAACTTTCCGATATGGTTGTCAAGGATAAAGTGACTGAAGAGCGAACAAGTGACATTGTTTCATATGATCGTGAAATACCCTATAGTTTACGATCTTCAAGAGTTATTTCTTCTGTGGAAGCAGATTCAAATTCAGAAATGAGTAACAGCAAAAATGTATCTAAGAAGTCTCGATCTAACATAGAATTCAGTACTAAAAGAGAACAAAACATGATTGATTTAGACAAAGTAAATTCTAAAATAGattggaaaattattatggCTCATTTTAAGTGCAAAGAATGTACAATTTCTTTAACAAGATGTGATGAACGACCAAAAAATTCTTATCAGATTTCTACAATTGAAACCATGGAAAACACTTCTCTTACTACTCAATGCAATTCTATGTTGGTTCAAGAAAGTAATATACAAGACAAAATGATGCTCAAAGATTTAGAAGTTTCTTTGGAACGTTTAACAGCTGTTCCAACTATAGATATAAAGGCAAAGACAACGTCGGACATCGAGAAACACAATAACAATCTATTTTTGTGTAAAGTTTGTAAGCAGagtttttcttcaaaattggcCAAACGCATACATATTAAGTCGTCTCATATAGCATATATGTCAAGCATATGTGATGCACGATATACACTGAAGCATAAATTGCTTCAGCATTATCTGCGCGAACATCTATTTAAACAAGATCAATGTTGTATTTGTTACATGTTATTACCTGATTATGAAGCTCTGAAGCAACACTTAAATATTCATTGTCTGAAGTATATTCAAAGGGAGAACGATAGATGTTCAGTAGATATTgagttaaaatgtaatttgaccaaaaaaatgtttaagtgTCTTCAATGTAACAAATCATCACTATCATCTTTAGTGGCACATCAAAGTTGTTGCACAGTACAAGAAGAGATGAAAGAAAATCAGGAAGATTTTATGAAAGAAGCAAGTGCATACCCAAAGGACAATCTTACGATGCAACACAAGAACACCGATGAAAATATAGTTACACGTGATGAAAGGATTAATCCagatgatttatataaatcttcaaATAGCGATTGTGTAAAAGAATCAAACGAATGTCAAATATTGCTTTCTAGTGATAAAGAACCGAAAATTAATGAAGCTAATCAAaactcttttattaataataacttattaactgagaaaaaaattgaaattgtcaATAAATCACAAGACTCTAAAAAGCTTTCAGAAAATAATACTGTCACAACCAATAATCAGAATATTGCGAATGCGCAGTTAGATGACATTACAACAAGAACTACGATTTATCCGTGTGATATATGTGGAAAGCAATTTCATAATCCCAAGAAGTTGGAGGTACACATACGCTCTTTTAGCTTTACTACCGATATCTGTCCAATGTGTGGCACTGGATTCAGTTCTAAACGTCTTCTACAGACACATATTACTGCAGCACATGTACCACAGATTTCAAAGACTTACAGTTTTCATTGCGTATTTTGTAACCAAGGTTTTTTAAGAAAACACGATCTCCGGCctcatatattacatttacatagtCAACAAGTGCTCAACATGCTCGCGCACAATCTTAATGTGATTGAAGAGAAATCTGATAAATCAATTGCTCATATCGCAATATGTAACGTTTGTAATTTGGTATTTGAGACTCATGACCGTTACATAGAACACCggatgtattattacaaaaaccaTACATTTACATGCTCACTCTGTGCGCAAAACTTTCAAGGAATGTACATGTTTCATCATCATAACAAACTTATACATTATTCAGAGGATAAACGCAagtcatataattatatctgcGACATATGCAACGAGGGATTCAATCATGAGTCACATTTTCATTCGCACAATATGCATGTTCATTCGAATGAAATGAATTTAGTTGATGCTGCAAAAGAATCTGAAGAAAAAAGTTGCTTTGATTATTCATCCGACGTCCAAAAGCAGAATAGAAATTTTTCTACGGAccaacaaaaacaaaataaagaattgtCCAATGAGTATACTTGCCAGATTTGTCAGCTGAAATGTACAAACTTGAATCATATGGAAAAACACaaagaattttattccaatGATGGCGATTTTAGATGTGACAAATGTAACAGACGATGCAAAACATTTGATTTACTTGATCAACATAGGAAATTAACTCACTCGtgttatgatatttataatggATATGCGTGTTGCCTTTGTGGTGAAGTTCTGGAAACTGCTTTTGCATTGAAATGTCATGAGAAACATTTTCATTCAAATATTATCGACAATAATGCGGATAATTGGGAGAATTGTGGTCAGACATCATCTTCGAACATTACAAACAAGACAATGGAACATTCAGATGAATCTAAGGataatacatgtaatataactaaatacaattgtttattttgcaatatgAAGTTTTCCACTGCTAACTCTGTTCAAACACATATTGTTTATGCTCATATGGATGATATGATAGCTAAACGAGCTGCTCTAAAACTTACTCTTCCTATTATTGATAGCGATGACATGCAGAAACAATTTGTTGAAACTGATCAAGTATCATCATTATCGTCATCTGAAGATAATTTAACTCAATTTCTTCGAAGATCAACGATTCAACAATCTAATAATGATACTATAGCTAAAAATGGAATGAACGATAAAACTACTATTGAATTACTAAAGAAATTTAACAATGTAgatccaaaaaataaaataaaggaaacTTTAGTTCCTGCAGTTCCATATATTAACAAATCTAAagacaatattttgacatgtaCTATTGCATCAAATACGGAATCAAAAGTGAATTCCTCAGTTTCTCTATCCACTGAATCAACAACTTTTAGGACTGTTGCACCAACTGAAAATAACACTTCAACTCTTCTATCTACTGGATCAACAATATTCAAAACTACCACACCAAATCCTGTATCCAAAGATAACACTTCAGTTCTTTTATCTAGATCAACCAATGATTTCAGAAAAAGTTATGGACGTCCTTTAAAATCTGGCTCAATCAACGAATTTAAAGCTAACTCAACTTCATCAACGAATAGAGttgtaataattgataaatccAAAACACCAACTGTACATCTTTTATCAACTGGATCATCAATAGTCAAAGGTGCTATGCCACAATCTTGGAAAAGCAATGAAATTACAAATCagaaatctgaatcagtgaacaGTTACAGTCATGGTTATTCATGTCCATTATGTCGGCTAGAATATCCATCTTTAATGTTTTTCCAGGCTCATCTCAAATATGCTCATGCAAATTCCATCCGAACTAATCAACTGACTATCCCACAGATGAATCAAGCTCAGAAGGCCTCTATGATAGAATGTTTATTGTGTCCACGTATCTTCACTGATGAGATCAAGTATAAAAAGCATTTAAGAAACTATCATACATATTGTGTGTATATCCCAAACTCTGAAGAGATGACAAAAATCAATAACGTATCCAATCCCGTAATAACACAGACGGACATCAGTAGGAGAAACACAATTCCTGAAATAATTACTGTAGATGATGATAATAACACATCAGATCAACAGGCAGCCCAAGTAGTAGCCACGCTCGATCACAAAAAACAGAATGAGAAAATTGGTAAATTGAGAGTGAAGCCTTTTGCAAagatcattgaaaatttatctacGGATTCTGCGTCAAACCTCTTGTAG
Protein Sequence: MDSEKSRIEKSFSNEMPPTKKLRQPTLTEYLELCKKKHDIKLSPNKLNIMKNDLPTCGLHHGGQIEGNSRLSEEHNGQIDSLPTTSDNLPKQIAPSIPEQSVKHEICSKKPFVRLHADVEMMKSFLDKLSDMVVKDKVTEERTSDIVSYDREIPYSLRSSRVISSVEADSNSEMSNSKNVSKKSRSNIEFSTKREQNMIDLDKVNSKIDWKIIMAHFKCKECTISLTRCDERPKNSYQISTIETMENTSLTTQCNSMLVQESNIQDKMMLKDLEVSLERLTAVPTIDIKAKTTSDIEKHNNNLFLCKVCKQSFSSKLAKRIHIKSSHIAYMSSICDARYTLKHKLLQHYLREHLFKQDQCCICYMLLPDYEALKQHLNIHCLKYIQRENDRCSVDIELKCNLTKKMFKCLQCNKSSLSSLVAHQSCCTVQEEMKENQEDFMKEASAYPKDNLTMQHKNTDENIVTRDERINPDDLYKSSNSDCVKESNECQILLSSDKEPKINEANQNSFINNNLLTEKKIEIVNKSQDSKKLSENNTVTTNNQNIANAQLDDITTRTTIYPCDICGKQFHNPKKLEVHIRSFSFTTDICPMCGTGFSSKRLLQTHITAAHVPQISKTYSFHCVFCNQGFLRKHDLRPHILHLHSQQVLNMLAHNLNVIEEKSDKSIAHIAICNVCNLVFETHDRYIEHRMYYYKNHTFTCSLCAQNFQGMYMFHHHNKLIHYSEDKRKSYNYICDICNEGFNHESHFHSHNMHVHSNEMNLVDAAKESEEKSCFDYSSDVQKQNRNFSTDQQKQNKELSNEYTCQICQLKCTNLNHMEKHKEFYSNDGDFRCDKCNRRCKTFDLLDQHRKLTHSCYDIYNGYACCLCGEVLETAFALKCHEKHFHSNIIDNNADNWENCGQTSSSNITNKTMEHSDESKDNTCNITKYNCLFCNMKFSTANSVQTHIVYAHMDDMIAKRAALKLTLPIIDSDDMQKQFVETDQVSSLSSSEDNLTQFLRRSTIQQSNNDTIAKNGMNDKTTIELLKKFNNVDPKNKIKETLVPAVPYINKSKDNILTCTIASNTESKVNSSVSLSTESTTFRTVAPTENNTSTLLSTGSTIFKTTTPNPVSKDNTSVLLSRSTNDFRKSYGRPLKSGSINEFKANSTSSTNRVVIIDKSKTPTVHLLSTGSSIVKGAMPQSWKSNEITNQKSESVNSYSHGYSCPLCRLEYPSLMFFQAHLKYAHANSIRTNQLTIPQMNQAQKASMIECLLCPRIFTDEIKYKKHLRNYHTYCVYIPNSEEMTKINNVSNPVITQTDISRRNTIPEIITVDDDNNTSDQQAAQVVATLDHKKQNEKIGKLRVKPFAKIIENLSTDSASNLL

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00129287;
90% Identity: iTF_00128576; iTF_00127785; iTF_00126287; iTF_00130078; iTF_00129330;
80% Identity: -