Aash021309.1
Basic Information
- Insect
- Aphaenogaster ashmeadi
- Gene Symbol
- dmrt1
- Assembly
- GCA_003063805.1
- Location
- NJRQ01000358.1:114571-115920[-]
Transcription Factor Domain
- TF Family
- DM
- Domain
- DM domain
- PFAM
- PF00751
- TF Group
- Zinc-Coordinating Group
- Description
- The DM domain is named after dsx and mab-3 [2]. dsx contains a single amino-terminal DM domain, whereas mab-3 contains two amino-terminal domains. The DM domain has a pattern of conserved zinc chelating residues C2H2C4 [1]. The dsx DM domain has been shown to dimerise and bind palindromic DNA [3].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 1 7e-26 3.5e-22 78.5 11.2 1 47 20 66 20 66 0.99
Sequence Information
- Coding Sequence
- aTGAAAACTGGCGGAGGCACTTCGAGTCGTTTGAGTACAAACGTGGAACAACGTTTAAGAAGTCCGAAGTGTGCGAGATGTCGAAACCACGGTGTAATATCCGGCTTGAAAGGTCACAAGAGATCCTGTGCATGGAAAGATTGCCGATGTCCTTGTTGTCTCCTGGTCGTCGAAAGGCAGCGAGTGATGGCAGCGCAAGTTGCTCTACGTAGGCAGCAACAAGCGCAAGGCGACAATCTTTTGTCTTCAGTAAATAAAATGTCAGCGGACACTGTAAGTCCTTATTACACTAAAGCGAAATACGACGAACCTGCCTGCGGTAGAAGAAGCAAGAATTTTCAAAGGCATCATTTACATTTCACGCAGACGAGTATCAGCGTGACGCAGGGTTTCTATGGATTAAATACTGTACACAGTTTACCTGGCGCATTATCAGCACATCCGCGGTTGTTGAGCACTTTGTCTTCTCTGGGATGCGATCAAAAACAAGAAGCTGAACCCACAATGAAGGTACAATCTTTCCATTCTGCATACCCGATGGTTCCATGGTTCAATGAGGTAACGCAATCGTACATAGCGAATGGGGActtgaacaattttatttctacgaGAGATTTGCGAAGCTGTCCTACTACAAATAATAAACcttgtttagaaaaaaaagcgccaaTTTCCTTCAGCGTGGAATCTATTATTGGTACGAAGTAA
- Protein Sequence
- MKTGGGTSSRLSTNVEQRLRSPKCARCRNHGVISGLKGHKRSCAWKDCRCPCCLLVVERQRVMAAQVALRRQQQAQGDNLLSSVNKMSADTVSPYYTKAKYDEPACGRRSKNFQRHHLHFTQTSISVTQGFYGLNTVHSLPGALSAHPRLLSTLSSLGCDQKQEAEPTMKVQSFHSAYPMVPWFNEVTQSYIANGDLNNFISTRDLRSCPTTNNKPCLEKKAPISFSVESIIGTK
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00129764; iTF_00128999; iTF_00126736; iTF_00127479; iTF_00128222; iTF_01354632; iTF_00417577; iTF_00765609; iTF_00885136; iTF_00769641; iTF_00452594; iTF_01087220; iTF_01422254; iTF_01520246; iTF_01409155; iTF_01422951; iTF_01423683; iTF_01421581; iTF_00385338; iTF_01015831; iTF_01405729; iTF_01407332; iTF_01408242; iTF_01406524; iTF_01476935; iTF_01477583; iTF_00014737; iTF_00182645; iTF_00016055; iTF_01261849; iTF_00016699; iTF_00015388; iTF_00181981; iTF_01476190; iTF_01523377; iTF_01229048; iTF_01228390; iTF_00109854; iTF_01254817; iTF_01077485; iTF_00729328; iTF_00868821; iTF_00867421; iTF_01245246; iTF_00264296; iTF_00265014; iTF_00898760; iTF_00279989;
- 90% Identity
- iTF_00129764; iTF_00128999; iTF_00126736; iTF_00127479; iTF_00128222; iTF_01422951; iTF_01423683; iTF_01421581; iTF_01422254;
- 80% Identity
- iTF_00129764; iTF_00128999; iTF_00127479; iTF_00128222;