Asor026545.1
Basic Information
- Insect
- Apamea sordens
- Gene Symbol
- -
- Assembly
- GCA_945859755.1
- Location
- CAMAOQ010000095.1:840442-846101[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 22 0.0071 0.59 11.5 0.2 1 23 32 55 32 55 0.93 2 22 0.64 54 5.3 0.1 2 23 84 106 83 106 0.93 3 22 0.55 46 5.6 2.5 1 23 174 197 174 197 0.90 4 22 9.8 8.1e+02 1.6 0.1 2 23 227 249 226 249 0.92 5 22 0.66 55 5.3 5.2 2 23 272 293 271 293 0.97 6 22 0.0018 0.15 13.4 0.3 1 23 297 319 297 319 0.96 7 22 0.35 29 6.2 1.4 1 23 324 347 324 347 0.90 8 22 0.11 9.5 7.7 0.9 2 23 355 377 354 377 0.93 9 22 0.0014 0.12 13.7 1.3 2 23 385 407 384 407 0.96 10 22 0.0042 0.35 12.2 5.1 1 23 413 435 413 435 0.96 11 22 1e-06 8.7e-05 23.6 0.6 1 23 441 463 441 463 0.99 12 22 0.00068 0.057 14.7 5.5 1 23 469 492 469 492 0.97 13 22 0.003 0.25 12.7 0.1 1 23 565 588 565 588 0.94 14 22 0.62 52 5.4 0.0 2 23 621 643 620 643 0.94 15 22 0.78 65 5.1 5.4 2 23 666 687 665 687 0.96 16 22 2.8e-05 0.0024 19.0 0.5 1 23 691 713 691 713 0.98 17 22 0.59 49 5.5 0.6 1 13 718 730 718 738 0.78 18 22 0.016 1.4 10.4 1.4 2 23 749 771 749 771 0.94 19 22 0.00016 0.013 16.7 4.5 1 23 778 801 778 801 0.98 20 22 0.004 0.33 12.3 6.0 1 23 807 829 807 829 0.98 21 22 4e-06 0.00033 21.7 1.0 1 23 835 857 835 857 0.99 22 22 0.00081 0.067 14.5 3.1 1 23 863 886 863 886 0.98
Sequence Information
- Coding Sequence
- ATGATGGAAGAAATGAAGAAACACCACACAAATCTAAAAGAAATTCTAACTTGCTCCAATGCCACGCCTTTTGTTGGAGTCAATTATCAAGGGTATTTGTGTTCCTACTGCGATTCTCAGTATCCAGACCCGGCAGCTCTAAAGAAACATAGTCGTGAGAACCATAGAGGTCTAGACGACTCCGTAATACCAAATCTTAACAAGAACACTATTGAGAACTTTTGTATAAAGTTGGATATAACTGATTTACGATGCACACTCTGCGCCGCTAACATAGACACACTAGAAAACTtgctaaaacatttaaaaaatgaccACAAAAGAGgTGACAACAAACCTAAGAAACAACCTGCACCAAAAAACAACCCACCAGCCAAGGAAAGTGCTATTAATGAGAGCCTTAACTCTGCTAAAACCAAGATTTCAGTAAGAGAAGAATTTGAAAAACATCAGAAGAATACGCAAATGATAATAATGTGCAGCAATGCAACCCCCTTCCTTCAAAAGCTGGACACGGGTTATGTCTGTTGTTACTGCAACGATCAGTATCACAACCCTGCCGATCTAAAGAAGCATAACCTAGAAATTCACGGAGACAaatataacccagtaactgcaCACGTTATAAAGAACTCCAGAAAGACTGAATTCTGCGTCAAATTAGACATTACAGGCTTACAATGTAAGCTGTGCAGTTCAGATATTCCGTCATTAGAGCAATTTGTAGATCATCTCCAAAGTGagcacaaaagaaaaatatttacggatatcaaaaataagattttaccaTTCAAGTTTGAAAATGATGATATTCGCTGCTGCATTTGCTCCAACATATTCGAAAAGTTTCGGAAATTGCAGGAACATATGCATACACATTACAGGAACTATATTTGCGAGCAGTGCGATCTAGGTTTCGTGACCCTCACCAGTCTAAGAAGTCATTCAGAAAAACACAAGTTAGGCGTATTCAAATGCAAGTTTTGCCCCAAAGTATCTGATACACTACGAAAGAAACAGTCGCACGAAAAAGCGGTGCATGTATTGGGATATTTGGTGAGCAAATGCGGGTACTGCAGCGAAAGGTTCACGAGTACCAAAAACAAGGATGAACATTTGGCGAAAGTCCATGGTGTTCAGATACGTGCTCTCAAATGCCAAGCTTGTGAAAAAACTTTCCAAAACAAAAGAGCTTTGACAATACACACGAAGAGAGACCACTTGATGGAAAGAAAGCATAAGTGTTCCCAATGTGATATGAGGTTCTTCAACTCTAGTAGTTTGAAAATGCATTCAACGAAGCATTCGGGGGTGAAGGCGTTCCAGTGTGACGTATGTGAGAAAGCTTACGCCCAGAAGAAAACTCTGACACAGCATATGAGGATACATTTAGATGATAGGCGCTTTAAGTGCAAACACTGCGGGCAGGCATTTGTGCAAAAGTGTAGTTGGAAAGGTCACATGAAGAATAGACACGGTTATCCAGAAACAGTGAGCAAGAAAAGTGAAATGAAAAATTTAGAGCAAGCTGTATTAGTTATCGTAGGACCCGAAAGGAAAAAAAGGGAAAGAACACAGGTAAATAATACTATCAAACCGTACGTGAGTGAATTGGAGAAACATCGCCACAACGTCAGACAAATCCTACAATGTTCTAACGCTACACCAGTAATGCGTCGCGGAGGCGTGGGGTACGTGTGCAGTTACTGTTTCGAAGAGTTCCCAGAGGCTGTGGATCTAAAAAAACATACACTGGCTGAACATACATCTAACCCTACAGTATCAGACCCTAGAGTTGGATACTCTTCTAAGACCGCTTCGATGTCTGAATACAACATCAAGCTAGACATCACCAACCTCGAGTGTACGGAATGTGCTATAGCCATAGACAGTCTGGAAGATTTACTAACCCACATGCAGGAAGAGCATAAAATTTGTTTGCATACTGACATTAAAAGTCATATCATACCTTTCAAATTTGAAACAGATGAACTTACTTGCTGCTTATGTCCCAGTACTTTCGACAAGTTTAAAAAGCTGCAGGAGCATATGCACTCCCATTACAGGAATTTCATTTGTGACGTCTGTGATACCGGGTTCGTTACCCAGGGAAGTTTCACCAGACATCGCAGCACGCACTTAAAAGGAGTCTTCCCATGCAGCTACTGCTCGAAAATTTTCGATACGATGTTGAAAAAGCGATCTCATGAGAGATGCAACCATACTCACACCGACGTGCTTAATAGATGCGCATACTGCAACAAAGGCTTCAGAGACTACCATACTAGGGAACTACACATGTCTGAAGTCCACGGTGTTAAGCCAACCGAATACAAATGCAATGCTTGCGACAAGTGTTACACCACCAAGCGTAAACTGAGGATCCACGTAAAAAGAGATCATCTGTTAGAGAGGAGACACAAATGTTTGACCTGTGACATGAGATTCTTTTCTTCCCACGATGTCAAAAAGCATATGCTAACACATACTGGGGAAAGGGAGTTTCAATGCGAAATATGTTTGAAATCATATGGAAGGAAATCTACTTTAAGTAGCCATATGAGGATCCATAATAATGATCGACGATTTGAATGTAATTTTTGTGGGATGTCCTTTGTTCAGAAATGTAGCTGGAAAGGGCATTTGAAGACTAAACATGGAGAGATTGTTATGTAG
- Protein Sequence
- MMEEMKKHHTNLKEILTCSNATPFVGVNYQGYLCSYCDSQYPDPAALKKHSRENHRGLDDSVIPNLNKNTIENFCIKLDITDLRCTLCAANIDTLENLLKHLKNDHKRGDNKPKKQPAPKNNPPAKESAINESLNSAKTKISVREEFEKHQKNTQMIIMCSNATPFLQKLDTGYVCCYCNDQYHNPADLKKHNLEIHGDKYNPVTAHVIKNSRKTEFCVKLDITGLQCKLCSSDIPSLEQFVDHLQSEHKRKIFTDIKNKILPFKFENDDIRCCICSNIFEKFRKLQEHMHTHYRNYICEQCDLGFVTLTSLRSHSEKHKLGVFKCKFCPKVSDTLRKKQSHEKAVHVLGYLVSKCGYCSERFTSTKNKDEHLAKVHGVQIRALKCQACEKTFQNKRALTIHTKRDHLMERKHKCSQCDMRFFNSSSLKMHSTKHSGVKAFQCDVCEKAYAQKKTLTQHMRIHLDDRRFKCKHCGQAFVQKCSWKGHMKNRHGYPETVSKKSEMKNLEQAVLVIVGPERKKRERTQVNNTIKPYVSELEKHRHNVRQILQCSNATPVMRRGGVGYVCSYCFEEFPEAVDLKKHTLAEHTSNPTVSDPRVGYSSKTASMSEYNIKLDITNLECTECAIAIDSLEDLLTHMQEEHKICLHTDIKSHIIPFKFETDELTCCLCPSTFDKFKKLQEHMHSHYRNFICDVCDTGFVTQGSFTRHRSTHLKGVFPCSYCSKIFDTMLKKRSHERCNHTHTDVLNRCAYCNKGFRDYHTRELHMSEVHGVKPTEYKCNACDKCYTTKRKLRIHVKRDHLLERRHKCLTCDMRFFSSHDVKKHMLTHTGEREFQCEICLKSYGRKSTLSSHMRIHNNDRRFECNFCGMSFVQKCSWKGHLKTKHGEIVM
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00121673;
- 90% Identity
- iTF_00121673;
- 80% Identity
- -