Aanc028933.1
Basic Information
- Insect
- Apamea anceps
- Gene Symbol
- -
- Assembly
- GCA_951799955.1
- Location
- OX637530.1:4542119-4547978[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 22 3.8e-05 0.0032 18.7 1.5 1 23 10 32 10 32 0.98 2 22 8.4e-05 0.0071 17.6 0.4 1 22 38 59 38 59 0.96 3 22 0.51 43 5.7 2.5 1 23 124 147 124 147 0.90 4 22 4.4 3.7e+02 2.7 0.1 2 23 177 199 176 199 0.93 5 22 0.62 52 5.4 5.2 2 23 222 243 221 243 0.97 6 22 0.0017 0.14 13.5 0.3 1 23 247 269 247 269 0.96 7 22 0.33 28 6.3 1.4 1 23 274 297 274 297 0.90 8 22 0.11 9 7.8 0.9 2 23 305 327 304 327 0.93 9 22 0.00037 0.032 15.5 1.3 2 23 335 357 334 357 0.96 10 22 0.004 0.34 12.3 5.1 1 23 363 385 363 385 0.96 11 22 8.7e-07 7.4e-05 23.8 0.9 1 23 391 413 391 413 0.99 12 22 0.065 5.5 8.5 2.9 1 15 419 433 419 435 0.88 13 22 0.00053 0.044 15.1 0.2 1 23 508 531 508 531 0.98 14 22 0.58 49 5.5 0.0 2 23 564 586 563 586 0.94 15 22 0.73 62 5.2 5.4 2 23 609 630 608 630 0.96 16 22 2.7e-05 0.0023 19.1 0.5 1 23 634 656 634 656 0.98 17 22 0.2 17 6.9 0.7 1 13 661 673 661 681 0.78 18 22 0.015 1.3 10.5 1.4 2 23 692 714 692 714 0.94 19 22 0.00015 0.013 16.8 4.5 1 23 721 744 721 744 0.98 20 22 0.0037 0.31 12.4 6.0 1 23 750 772 750 772 0.98 21 22 3.7e-06 0.00032 21.8 1.0 1 23 778 800 778 800 0.99 22 22 0.00076 0.064 14.6 3.1 1 23 806 829 806 829 0.98
Sequence Information
- Coding Sequence
- ATGGTAACTCATACAAAAACAAGAGAGTTCCAATGCACTAAGTGCCTGAAGTCATATGGCCGGAAGGAAACTTTGAGGAAGCATATTGAAATACACAGTGACGTTAGACGCTTTAAATGCGAGCACTGCGGTCAGGCATTTGTGCAGAAAATCAGCTGGAAGGGGCACATGAGAAgTGAGAACAAACCTAAGAAACAACCTGAACCAAAAAACAACCCACCACCCAAGGAAAGTGCTATTAATGAGAGCCTTAACTCTGCTAAAGCCAAGATGTCAGTAAGAGAAGAATTTGAAAAACATCAGAAGAATACGCAAATGATAATAATGTGCAGCAATGCAACCCCCTTCCTTCAAAAGCTGGACACGGGTTATGTCTGTTGTTACTGCAACGATCAGTATCACAACCCTGCCGATCTAAAGAAGCATAACCTAGAAATTCACGGAGATAaatataacccagtaactgcaCACGTTATAAAGAACTCCAGGAAAACTGAATTCTGCGTCAAATTAGACATTACAGGCTTACAATGTAAGCTGTGCAGTTCAGATATTCCGTCATTAGAGCAATTTGTAGCACATCTCCAAAGTGagcataaaagaaaaatatttactgaTATCAAGAATAAGATTTTACCATTCAAGTTTGAAAATGATGATATTCGCTGCTGCATTTGCTCCAACATATTCGAAAAGTTTCGGAAATTACAGGAACATATGCATACACATTACAGGAACTATATTTGCGAGCAGTGCGATCTAGGTTTCGTGACCCTCACCAGTCTAAGAAGTCATTCAGAAAAACACAAGTTAGGCGTATTCAAATGCAAGTTTTGCCCTAAAGTATCTGACACACTACGAAAGAAACAGTCGCACGAAAAAGCGGTGCATGTATTGGGATATTTGGTGAGCAAATGCGGGTACTGCAGCGAAAGGTTCACGAGTACCAAAAACAAGGATGAACATTTGGCGAAAGTCCATGGCGTTCAGATACGTGCTCTCAAATGCCAAGCTTGTGACAAAACTTTCCAAAACAAAAGAGCTTTGACAATACACACGAAGAGAGATCACTTAATGGAAAGAAAGCATAAGTGTTCCCAATGTGATATGAGGTTCTTCAACTCTAGTAGTTTGAAAATGCATTCAACGAAGCATTCGGGGGTGAAGGCGTTCCAGTGTGACGTATGTCAGAAAGCTTACGCCCAGAAGAAGACTCTGACACAGCATATGAGGATACATTTAGATGATAGGCGCTTTAAGTGCAAACACTGCGGGCAGGCATTCGTGCAGAAGTGTAGTTGGAAAGGTTATCCAGAAACAGTGAGCAAGAAAAGTGAAATGAAAAATTTAGAACAAGCTGTATTAGTTATCGTAGGACCCGAAAGGAAAAAGAGGGAAAGAACACAGGTAAATAATACTGTCAAACCGTACGTGAGTGAATTGGAGAAACATCGCCACAACGTCAGACAAATCCTGCAATGTTCTAACGCTACACCAGTAATGCGTCGCGGAGGCGTGGGGTACGTGTGCAGTTATTGTTTCGAAGAGTTCCCAGAGGCTGTGGATCTAAAAAAACATACACTGACTGAACATACATCTAACCCTACAGTGTCAGACCCTAGAGTTGGATACTCTTCTAAGACCGCTTCGATGTCTGAATACAACATCAAGCTAGACATCACCAACCTCGAGTGTACGGAATGTGCTATAGCCATAGACAGTCTGGAAGATTTACTCACCCACATGCAGGAAGAGcataaaaaagttttgcatACTGACATTAAAAGTCATATCATACCTTTCAAATTTGAAACAGATGAACTTACTTGCTGCTTATGTCCCAGTACTTTCGACAAGTTTAAAAAGCTGCAGGAGCACATGCACTCCCATTACAGGAATTTCATTTGTGACGTCTGCGATACCGGGTTCGTTACCCAGGGAAGTTTCACCAGACATCGCAGCACGCACTTAAAAGGAGTCTTCCCTTGCAGCTACTGCTCAAAAGTTTTCGATACGATGTTGAAAAAGCGATCTCATGAGAGATGCAACCATACTCACACCGACGTGCTCAATAGATGCGCGTACTGCAACAAAGGCTTCAGAGACTACCATACTAGGGAACTACACATGTCTGAAGTCCACGGTGTTAAGCCAACCGAATACAAATGCAATGCTTGCGACAAGTGTTACACCACCAAGCGTAAACTGAGGATCCACGTAAAAAGAGATCATCTGTTGGAGAGGAGACACAAATGTTTGACCTGTGACATGAGATTCTTTTCTTCCCATGATGTCAAAAAGCATATGCTAACACACACTGGGGAAAGGGAGTTCCAATGCGAAATATGTTTAAAATCATATGGAAGGAAATCTACTTTAAGTAGCCATATGAGGATCCATAATAATGATCGACGATTTGAATGTAATTTTTGTGGGATGTCCTTTGTTCAGAAATGTAGCTGGAAAGGGCATTTGAAGACTAAACATGGAGAGATTGTTATGTAG
- Protein Sequence
- MVTHTKTREFQCTKCLKSYGRKETLRKHIEIHSDVRRFKCEHCGQAFVQKISWKGHMRSENKPKKQPEPKNNPPPKESAINESLNSAKAKMSVREEFEKHQKNTQMIIMCSNATPFLQKLDTGYVCCYCNDQYHNPADLKKHNLEIHGDKYNPVTAHVIKNSRKTEFCVKLDITGLQCKLCSSDIPSLEQFVAHLQSEHKRKIFTDIKNKILPFKFENDDIRCCICSNIFEKFRKLQEHMHTHYRNYICEQCDLGFVTLTSLRSHSEKHKLGVFKCKFCPKVSDTLRKKQSHEKAVHVLGYLVSKCGYCSERFTSTKNKDEHLAKVHGVQIRALKCQACDKTFQNKRALTIHTKRDHLMERKHKCSQCDMRFFNSSSLKMHSTKHSGVKAFQCDVCQKAYAQKKTLTQHMRIHLDDRRFKCKHCGQAFVQKCSWKGYPETVSKKSEMKNLEQAVLVIVGPERKKRERTQVNNTVKPYVSELEKHRHNVRQILQCSNATPVMRRGGVGYVCSYCFEEFPEAVDLKKHTLTEHTSNPTVSDPRVGYSSKTASMSEYNIKLDITNLECTECAIAIDSLEDLLTHMQEEHKKVLHTDIKSHIIPFKFETDELTCCLCPSTFDKFKKLQEHMHSHYRNFICDVCDTGFVTQGSFTRHRSTHLKGVFPCSYCSKVFDTMLKKRSHERCNHTHTDVLNRCAYCNKGFRDYHTRELHMSEVHGVKPTEYKCNACDKCYTTKRKLRIHVKRDHLLERRHKCLTCDMRFFSSHDVKKHMLTHTGEREFQCEICLKSYGRKSTLSSHMRIHNNDRRFECNFCGMSFVQKCSWKGHLKTKHGEIVM
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00124499;
- 90% Identity
- iTF_00124499;
- 80% Identity
- -