Asor017629.1
Basic Information
- Insect
- Apamea sordens
- Gene Symbol
- -
- Assembly
- GCA_945859755.1
- Location
- CAMAOQ010000044.1:245344-247560[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 4.4e-10 3.6e-07 30.6 0.0 3 37 17 51 15 57 0.93 2 2 2.4 2e+03 -0.6 0.0 22 30 142 150 128 151 0.74
Sequence Information
- Coding Sequence
- ATGTCTCGGAAGTATGAAAGAAAGACACTACGAGCATCATGGAGTGCGGACGACTTAGACAAAGCCATGCGTAGTGTCCTAAGCAAAGTAATGGGTGTTAATGAGGCATCCAGAAACTTTGGCATACCGTCTCGAACTCTAAGAAGACACATTTTATCAGGAAAATCAAAGGGCCCTCTAGGACGCAAACCAGTATTTTCTGTagaatatgaaaaaaaactGGTTGGCCATATAAAGAAATTGGAAAAAGTTGGATTTGCCCCTGACAGAAAAGATGTAAAAGAAATGGCATTTCAACTAGCTAAGAAACTTAATGTTAAAAACCCATTTTCAGCAAGTTCAGAATCAGCTGGAAATGTATGGTTTTCGGGATTCATGGCTCGCAACTCAGAATTAAGTCAAAGAAAATCAGAAGGCTTGTCACTTGCTCGAGCTTATGGAGTTAATAGAAAAGATGTACaggatttttttgatttattaGCCAAAATCTACGAAGAAAATGATTTTGCAAATCACCCCGAAGATATTTTCAACATGGACGAGTCCGGCATACAGGTGAACAATAAGCCAGGAAGAGTAATTGCCACAAAGGGAGCCAAAGATGTCTATACGCTCACTAGCTCTGAAAAGGGTGAAAACGTAACGGTGATTGCTTGTTGTAATGCTCAAGGTAACTTCCTTCCCCCTGTTTTAATCTACAAGGGTACTTACAGCAAACCACAATTTTCCGAAGGTCTTCCTCCAGGATCACAGGTTTTCATGAACAAAAAGTCTTCTTATATAAATACAGATCTCTTCATGCAATGGTTTGAAGAAGTGTTTTTGCGTCACAAGAGTCCTCGAAAAACATTGTTAATATTAGATGGTCACAGCTCGCACAGTAACAATATTCGCCTGCTGGAAGTGGCTAAAGAAAATGATGTTATTCTTTTGTGCCTACCAAGTCACACTACGCATGCTCTGCAGCCTCTTGATAGAGCCTTCTTCAGACCATTGAAGGTGTACTTTGCCCAGGAAGCGAAGACATGGATGGTCAGGAACAAAGAGAAGAAGTTGACACGCTATGACGTGTCTAAGTTAATAGGACGAGCGTGGGGCAAAGCTGCCACTGTTTCCAACGGTGTGTCAGCTTTAAAATCATGTGGAATTTTTCCTTTTGATCCGAGTGCCATTCCTGATCACTATTTTTCACTATCTGATTCACTGCGAGACCAAAATTTAGTTGTTGAAGATGAGGATGGGACGTCAAGAGAGTCTCTGTCATTACTTCATGAATATGACGATAGTGAACTAATTGCCTTTGATACAATCCATTCATCACCGCAGCAGGTCGTAAATGATTTAGAGCCCAGGACATTAGGATCACCACCTGTCGTTGTGACTGAGTTCCAACCTGAGCCAGGTCCTTCAGGACTACATCTACCTAATCCAAATTACGAAGATAGTTTGATGGAAGTAGTAACTGAACATTCATTGCCTGTGCAAGATGCACCTGTGGCAGAAGAGTTTGACCAAATGAATATCATATTGCCAAAAACACCACAAAAGTATCCGGTACAATGTCGTCTCGAGAGTGAGGCGGGTCTGACTATTGAGAAATCTAATCTTAATGATTTGATTGAACAAACCCCTGAAAAGCAAATAGGATCTACTGAGTCTGAAGCAACACCATCCAAAGTTTTGAATGAAATCCATCCAGTGCCTAAACTTCCAGTAGTATTATCTAAGAGAAAACAAACAGCTGTTATTTTAACTTCTGATGAAAATATAGAGAAACGGAAAGTAATTGCTGATAAAAAGAAACCAGCAGCTGGAAAATTGAAGCAGGCTAAGACAGCAAAAAGAATTAAAACagtgaaagaaaaagatggtgtaaaaaagaaacaaaatgggGGTATAAAGAAGCCAAAGAAAGGTCCTGTCAGAAATAAGAATAAGATGAAGAAAAAAGTAAGCTGGTCATCGTCTTCTGAAAGCAATGATGATAACGAGGTTAGGGTAGATACTTCTGAAGAAGAAATCTCAGACGAACACGACGACATTAACAGATGCGTTGAATGCAcagaaaattattatgacacacAATCCACTGAAGACTGGATTCAATGCCCGTCTTGTTTAACATGGTTGCATGAGTTTTGCACTATGTATAACCCAATGTGTAATCGTTGTGGACGGAAAGCCAAAAAGGAAGCTGTTAACAAAAATAGAGTGTAA
- Protein Sequence
- MSRKYERKTLRASWSADDLDKAMRSVLSKVMGVNEASRNFGIPSRTLRRHILSGKSKGPLGRKPVFSVEYEKKLVGHIKKLEKVGFAPDRKDVKEMAFQLAKKLNVKNPFSASSESAGNVWFSGFMARNSELSQRKSEGLSLARAYGVNRKDVQDFFDLLAKIYEENDFANHPEDIFNMDESGIQVNNKPGRVIATKGAKDVYTLTSSEKGENVTVIACCNAQGNFLPPVLIYKGTYSKPQFSEGLPPGSQVFMNKKSSYINTDLFMQWFEEVFLRHKSPRKTLLILDGHSSHSNNIRLLEVAKENDVILLCLPSHTTHALQPLDRAFFRPLKVYFAQEAKTWMVRNKEKKLTRYDVSKLIGRAWGKAATVSNGVSALKSCGIFPFDPSAIPDHYFSLSDSLRDQNLVVEDEDGTSRESLSLLHEYDDSELIAFDTIHSSPQQVVNDLEPRTLGSPPVVVTEFQPEPGPSGLHLPNPNYEDSLMEVVTEHSLPVQDAPVAEEFDQMNIILPKTPQKYPVQCRLESEAGLTIEKSNLNDLIEQTPEKQIGSTESEATPSKVLNEIHPVPKLPVVLSKRKQTAVILTSDENIEKRKVIADKKKPAAGKLKQAKTAKRIKTVKEKDGVKKKQNGGIKKPKKGPVRNKNKMKKKVSWSSSSESNDDNEVRVDTSEEEISDEHDDINRCVECTENYYDTQSTEDWIQCPSCLTWLHEFCTMYNPMCNRCGRKAKKEAVNKNRV
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00906049;
- 90% Identity
- iTF_01439841;
- 80% Identity
- -