Aepo008114.1
Basic Information
- Insect
- Apamea epomidion
- Gene Symbol
- -
- Assembly
- GCA_947507525.1
- Location
- OX382229.1:11467212-11469422[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 6.1e-10 2.7e-07 30.6 0.0 3 37 17 51 15 57 0.93 2 2 4.9 2.2e+03 -1.1 0.0 22 30 142 150 137 151 0.81
Sequence Information
- Coding Sequence
- ATGTCTCGGAAGTATGAAAGAAGGACACTACGAGCATCATGGAGTGCGGACGACTTAGACAAAGCCATGCGTAGTGTCCTCAGCAAAGTAATGGGTGTTAATGAGGCATCCAGAAACTTTGGCATACCGTCTCGAACTCTAAGAAGACACATTTTATCAGGAAAATCAAAGGGCCCTCTAGGACGTAAACCAGTATTTTCTGTAGAATATGAAAAAAAACTGGTTGCCCATATAAAGAAATTGGAAAAAGTTGGATTTGCCCCTGACAGAAAAGATGTAAAAGAAATGGCATTTCAACTAGCTAAAAAACTTAATATTAAAAATCCATTTTCAGCAAGTTCAGAATCAGCTGGAAATGTATGGTTTTCGGGATTCATGGCTCGCAACTCAGAATCAAGTCAAAGAAAATCAGAAGGCTTGTCACTTGCTCGAGCTTATGGAGTTAATAGAAAAGATGTACAGGATTTTTTTGATTTACTAGCCAAAATCTACGAAGAAAATGATTTTGCAAATCACCCCGAAGATATTTTCAACATGGACGAGTCCGGCATACAGGTGAACAACAAGCCAGGAAGAGTAATTGCCACAAAGGGAGCCAAAGATGTCGACACGCTCACTAGCTCTGAAAAGGGTGAAAACGTAACGGTGATTGTTTGTTGTAATGCTCAAGGTAACTTCCTTCCCCCTATTTTAATCTATAAGGGTACTTACAGCAAACCACAATTTTCCGAAGGTCTTCCTCCAGGATCACAGGTTTTCATGAACAAAAAGTCTTCTTATATAAATACAGATCTCTTCATGCAATGGTTTGAAGAAGTGTTTCTGCGTCACAAGAGTCCTCGAAAAACATTGTTAATATTAGATGGTCACAGCTCGCACAGTAACAATATTTACCTACTGGAAGTGGCTAAAGAAAACGATGTTATTCTTTTGTGCCTACCAAGTCACACTACGCATGCTCTGCAGCCTCTTGATAGAGCCTTTTTTAGACCATTGAAGGTGTACTTTGCCCAGGAAGCGAAGACATGGATGGTCAGGAACAAAGAGAAGAAGTTGACACGCTATGACGTGTCTAAGTTAATCGGACGAGCTTGGGGCAAAGCTGCCACTGTTTCCAACGGTGTGTCAGCTTTAAAATCATGTGGAATTTATCCTTTTGATCCGAGTGCCATTCCTGATCACTATTTTTCACTATCTGATTCGCTGCGAGACCAAAATTTAGTTGTTGAAGATGAGGATGGGACGTCAAGAGAGTCTCTGTCTTTACTTCATGAATATGACGATAGTGAACTAATTGCCTTTGATACAATTCATTCATCATCGCAGCAAGTCGTAAATAATTTAGAGCCCAGGACATTAGGACCACCACCTGTCGTTGTGACTGAGTTCCAACCTGAGCCAGGTCCTTCAGGACTACATCTAACTTATCCAAATTACGAAGATAGTTTGATGGAAGTAGTAACTGAACATTCATTGCCTGTGCAAGATGCACCTGTGGCAGAAGAGTTTGACCAAATGAATATCATAATGCCAAAAACACCACAAAAGTATCCGGTACAATGTCGTATCGAGAGTGAGGCGGGTCTGACTATTGCGAAATCTAATCTTATTGATTTGATTGAACAAACCCCTGAAAAGCAAATAGGATCTACTGAGTATGAAGCAACACCATCCAAAGTTTTGAATGAAATCCAGCCAGTGCCTAAACTTCCAGTAGTATTGTCTAAAAGAAAACAAACAGCTGTTATTTTAACTTCTGATGAAAATATAGAGAAACGGAAAGTAATTGCTGATAAAAGGAAACCAGCAGCTGGAAATTTAAAGCAGGCTAAAACAACAAAAAAGATTAAAACAGTGAAAGAAAAAGATGGTGTAAAAAAGAAACAAAATGGGGGTATAAAGAAGCCAAAGAAAGGTCCTGTCAGAAATAAGAATAAGAAAAAAGTAAGCTGGTCATCGTCTTCTGAAAGCAATGATGAAAACGAGGTTAGGGTAGATACTTCTGAAGAAGAAATCTCAGACGAACACGACGACGTTAACAGATGCGTTGAATGCACGGAAAATTATTATGATACACAATCCACTGAAGATTGGATTCAATGCCCGTCTTGTTTAACATGGTTGCATGAGTTTTGCACTATGTATAACCCAATGTGTAATCGTTGTGGACGGAAAGCCAAAAAGGAAGCTGTTAACAAAAATAGAGTGTAA
- Protein Sequence
- MSRKYERRTLRASWSADDLDKAMRSVLSKVMGVNEASRNFGIPSRTLRRHILSGKSKGPLGRKPVFSVEYEKKLVAHIKKLEKVGFAPDRKDVKEMAFQLAKKLNIKNPFSASSESAGNVWFSGFMARNSESSQRKSEGLSLARAYGVNRKDVQDFFDLLAKIYEENDFANHPEDIFNMDESGIQVNNKPGRVIATKGAKDVDTLTSSEKGENVTVIVCCNAQGNFLPPILIYKGTYSKPQFSEGLPPGSQVFMNKKSSYINTDLFMQWFEEVFLRHKSPRKTLLILDGHSSHSNNIYLLEVAKENDVILLCLPSHTTHALQPLDRAFFRPLKVYFAQEAKTWMVRNKEKKLTRYDVSKLIGRAWGKAATVSNGVSALKSCGIYPFDPSAIPDHYFSLSDSLRDQNLVVEDEDGTSRESLSLLHEYDDSELIAFDTIHSSSQQVVNNLEPRTLGPPPVVVTEFQPEPGPSGLHLTYPNYEDSLMEVVTEHSLPVQDAPVAEEFDQMNIIMPKTPQKYPVQCRIESEAGLTIAKSNLIDLIEQTPEKQIGSTEYEATPSKVLNEIQPVPKLPVVLSKRKQTAVILTSDENIEKRKVIADKRKPAAGNLKQAKTTKKIKTVKEKDGVKKKQNGGIKKPKKGPVRNKNKKKVSWSSSSESNDENEVRVDTSEEEISDEHDDVNRCVECTENYYDTQSTEDWIQCPSCLTWLHEFCTMYNPMCNRCGRKAKKEAVNKNRV
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00906049;
- 90% Identity
- iTF_01439841;
- 80% Identity
- -