Basic Information

Insect: Apamea crenata
Gene Symbol: -
Assembly: GCA_949629185.1
Location: OX451382.1:5784421-5794026[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 13 0.0068 0.62 11.6 0.5 1 23 320 343 320 343 0.92

2 13 0.00037 0.034 15.6 0.1 2 21 381 400 381 401 0.93

3 13 2.2 2e+02 3.8 3.5 1 23 406 428 406 428 0.94

4 13 2.6 2.4e+02 3.5 1.1 1 18 707 723 707 726 0.75

5 13 4.6 4.2e+02 2.7 3.6 1 23 739 761 739 761 0.96

6 13 0.0036 0.33 12.5 1.0 2 23 767 788 766 788 0.96

7 13 0.62 57 5.4 1.4 1 21 811 830 811 832 0.74

8 13 0.00098 0.089 14.3 0.2 2 23 909 930 908 930 0.97

9 13 6.1e-07 5.6e-05 24.4 2.7 1 23 936 958 936 958 0.99

10 13 2.1e-05 0.0019 19.5 0.3 2 23 964 985 963 985 0.96

11 13 0.0037 0.33 12.5 1.8 2 23 992 1014 991 1014 0.96

12 13 0.073 6.6 8.4 0.1 1 20 1021 1040 1021 1040 0.91

13 13 0.00089 0.081 14.4 2.5 3 23 1053 1073 1052 1074 0.95

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	13	0.0068	0.62	11.6	0.5	1	23	320	343	320	343	0.92
2	13	0.00037	0.034	15.6	0.1	2	21	381	400	381	401	0.93
3	13	2.2	2e+02	3.8	3.5	1	23	406	428	406	428	0.94
4	13	2.6	2.4e+02	3.5	1.1	1	18	707	723	707	726	0.75
5	13	4.6	4.2e+02	2.7	3.6	1	23	739	761	739	761	0.96
6	13	0.0036	0.33	12.5	1.0	2	23	767	788	766	788	0.96
7	13	0.62	57	5.4	1.4	1	21	811	830	811	832	0.74
8	13	0.00098	0.089	14.3	0.2	2	23	909	930	908	930	0.97
9	13	6.1e-07	5.6e-05	24.4	2.7	1	23	936	958	936	958	0.99
10	13	2.1e-05	0.0019	19.5	0.3	2	23	964	985	963	985	0.96
11	13	0.0037	0.33	12.5	1.8	2	23	992	1014	991	1014	0.96
12	13	0.073	6.6	8.4	0.1	1	20	1021	1040	1021	1040	0.91
13	13	0.00089	0.081	14.4	2.5	3	23	1053	1073	1052	1074	0.95

Sequence Information

Coding Sequence: ATGGCGGACTCATCAAGAAAAAGGTCGAGAAAGTCGAAATTAGTGCCTCGAGAGTGTGCTGTTGACGACGATGATCTTGAATTGCAGGTTACAGAGCCGAAAGTACCTAAAACCATAAAACAGCCCACAAGCAGACAATCAACAAAAAAGGTGATAGTAACACCACCAGAGTCAACCTTCTCAAAACCAGAAGAGGTCGACACGAGCGTCCTGAGAAAAATTAACGCGGCAGCTAGGGAAGGTAATGAGCCTCAAACCAGATCGCCAAGAAAATTCGAGATTAACATTGAAGTAGAATCAtgtgatgatgacgatgaattTGAAGGACTTGTTGACGAAAATCATTTATCACCGCATGTTAAAGAAACGATAAAAGTAAGAACCGAACCTATTGAACTTTCTCGAGAAATCATTCTCGATGCTGCCGACAATATACTCCAAGATTCAACAAATATTGCTGATAAAATTCTAAATATGTACGTTAGGAACACGATAGGGTATGAGGAGAAGACGAATCTGGTATTAGACTGCCATGAGAAGCGAATACAACAGACCTTGGATGAATGGCGTACGTGGCAGTTCCGTAGTTTCCACAGAGAAGATCCTCTATTCTACAAATGCTATATCTGCACGAGGTCCTGGTGGCATTTAACAGACTTCCGCAACCATTTGTCTACAAAACACCCTGGTGATTTACTGATTATAATAGCTTtggaaaaatatgaaatgcATGAAGCCAATTTGATAGCGTACCACGAGAGGCTTGTTGTGATAAAAGATATATATACAGAAGGACTTTGCTACCGATGCGGTAAGGATTATGGTGCTCATGAGTTAGAATCGAGGTTCCAGGAGAAATATTACAAAACGGAAGGTTgcacaaaacagttttttagCTGTATGGGTCTAAGAGACCATTTTGCTAGCTGTCCTGTCTGTAAAAAAGAGGGTAAACCGTTCAAATGTGATATATGTAAATCAAGATTTAATACAGACGAGGAGTTAAACAGTCATTTAGTGTTGTCTCATTCCGTTCGGTCTGATATACCGATAATGTCTCACTATAAGAACTGCAAAAGCTGCTCGGAGAGGTTTTCTtgtcaatatttacataaatgcgGACAAAAGGTACCCCATAGAGAGTGTCCTCACTGTCCTCTGAGCTTCTCAAATAACATGTCTTTGGAAATACATTTGTTACGGTCAAATAAGCCTTATAAATGTGAAGTCTGCGGAGAGATGATGGCGCATAGCTGTAAAAAGTATGAACATATGTTGAAACACACGGACAAGTATATGATAGTAAGGAAATGTTTGACGTGTGAGGATTTGAACGTGTTTTTGAATATCGAAGATGCAGTGGCACATCGGTTGTTGCAACATGAGGTCAAAGAAACAAAACGTCAGAGCTATTTTCCTAAAATTTTAGTACCGTCATCCTGTGTTTACGAAATTTTAGCCGAATCAGAATGGAATGAACAAGAATCCGCATTGGAAGAACAAGAATTGGTACTGGAAGACCAAGAATCAGAACAGGAAGAAAAAGACTCGGTCCTGGTAGAACAAGAATTAGTACTGGAAGGAACTGAATCCATACCTGAAGTAGAAGAATCCGTATCGGAAGAAGAATCAGTATTAAAAAACGAAAGAGAATCTGTTTCAGTATGTGAGCAGAAATTGTTACAAGCAGAGCTAGAATCAGCAACAGAATTTATGTTGGGAACTGTTGTCAAacAAGAACCAGAAGATTCAGAAGACAGCCCAAGACTTGTAATCAAAGAAGAACCATTCGAAGAATTTGAAGACGAAACGCATGAAGAAGAGAATCCTACCGAGAATTTTGAACACGAAATAAGTGTCAAAGAAGAATTCATAGGAGAAGAATACACAGAGGAAGAAGAATATGAAGAAGATATCATCAAACTGAACTTCAATATAGAAGACTTATTAGTAAAACAAGAATCAATTCAAGAAGATGACGATTATACTGTAGAACAGACAGAGAGCCAAGAATCAGAAAATGATGAGTCAGAAGAATTTCCACAAGAATTGAAAGAAGATTCCATGCTAGAACCAGAAGTTATTATAGATGGGGAtgatagaaaaaacaaaaaactatacAGATGTACTACATGTGGATTTACAGCGTCGCATAAACAATATAGAAATCACGTGGACTATGACTGCGGCACCAACCCAATCAAACATAAAACCTACACATgcacaaaatgtcaaaatcaatTTGGgtctatgaaaaaatatttgacacattTCAAGGAGCATGGCTACAAACACCTCTCCTGTCCTGATTGCCTGAAAGAATTCGACACATACACACATCTAGGACAGCATCTACAACAGCACATCAAACAAAATTTTGTCCGAGTAAAAATGATCACACACGCAGGCAAGGCTATGACTAAACCTGATTATCAATGCAAGAAATGCGGAAAAATCATAATTTCACATAATTTTTTTGAGCATTGGGAGCTGCATATAAATGCCCAGCCTACGCATCCTATTAAAGTGACTTCGAGACCGAAGCATAAACATGGAGAATTGCATGAAACTATTATAAAGGAATGCATTGccCGCTTAAACAAACAGCCAAAGGAATGCAACCATTGTCACCGTTGGTTCAAACGGGTCAATGAATGCAAGCGCCACATTATAGAACATCTATTAAATGATGCATATAACCAGAAATACATCTACAAAGAGCTCAAATGCCAGATCTGTGAACAAGGGTTCGCTGTAccagaaaaatataaacaacatATGCGGGACCATGCGTCCCTACCTGTGTACAAGTGTGAACTGTGTGATCGCACCTTTAGTGACTCAAGCAACTTTACAAAGCATAAAAAAGTGCATAATTTGAAAGTGATTGTCTGTGATTTGTGCGGTAAAAAGTTTCAATCGAAAGTGTCTTTGGAGAAACATATTGAGAAACACATGGACTCACAGCCGATTACCTGCAAGATCTGCAATAAAATCTTCTACTTCGATACATCTTATCGACGCCATGTAAGGTACTTCCACGAGAAAACCGTCATTGGCTACCGGTGCGTTATCTGCGGTGAACGCTTCGACAGTCTTAAACTGAAATGGGATCATATGTGGGAGGTGCATAAGGAAAGGAAGCAGAAAGCTGACTGTCCTATCTGCCATCAGTCCTTCAGAAAGTACTCTGATGTCCGTCTCCATGCAAGAGTACACCACATGACGGAGGTTTCAGTGTTAAACGTCAAAAAACAGGCTTCGAAGTCAAATATAGATATTGATAATTACTTAGGAGATCCTGCTAAGATCAAAGCTGGGAGGATGGAGACTTTGGTTGtgtatgattcagattga
Protein Sequence: MADSSRKRSRKSKLVPRECAVDDDDLELQVTEPKVPKTIKQPTSRQSTKKVIVTPPESTFSKPEEVDTSVLRKINAAAREGNEPQTRSPRKFEINIEVESCDDDDEFEGLVDENHLSPHVKETIKVRTEPIELSREIILDAADNILQDSTNIADKILNMYVRNTIGYEEKTNLVLDCHEKRIQQTLDEWRTWQFRSFHREDPLFYKCYICTRSWWHLTDFRNHLSTKHPGDLLIIIALEKYEMHEANLIAYHERLVVIKDIYTEGLCYRCGKDYGAHELESRFQEKYYKTEGCTKQFFSCMGLRDHFASCPVCKKEGKPFKCDICKSRFNTDEELNSHLVLSHSVRSDIPIMSHYKNCKSCSERFSCQYLHKCGQKVPHRECPHCPLSFSNNMSLEIHLLRSNKPYKCEVCGEMMAHSCKKYEHMLKHTDKYMIVRKCLTCEDLNVFLNIEDAVAHRLLQHEVKETKRQSYFPKILVPSSCVYEILAESEWNEQESALEEQELVLEDQESEQEEKDSVLVEQELVLEGTESIPEVEESVSEEESVLKNERESVSVCEQKLLQAELESATEFMLGTVVKQEPEDSEDSPRLVIKEEPFEEFEDETHEEENPTENFEHEISVKEEFIGEEYTEEEEYEEDIIKLNFNIEDLLVKQESIQEDDDYTVEQTESQESENDESEEFPQELKEDSMLEPEVIIDGDDRKNKKLYRCTTCGFTASHKQYRNHVDYDCGTNPIKHKTYTCTKCQNQFGSMKKYLTHFKEHGYKHLSCPDCLKEFDTYTHLGQHLQQHIKQNFVRVKMITHAGKAMTKPDYQCKKCGKIIISHNFFEHWELHINAQPTHPIKVTSRPKHKHGELHETIIKECIARLNKQPKECNHCHRWFKRVNECKRHIIEHLLNDAYNQKYIYKELKCQICEQGFAVPEKYKQHMRDHASLPVYKCELCDRTFSDSSNFTKHKKVHNLKVIVCDLCGKKFQSKVSLEKHIEKHMDSQPITCKICNKIFYFDTSYRRHVRYFHEKTVIGYRCVICGERFDSLKLKWDHMWEVHKERKQKADCPICHQSFRKYSDVRLHARVHHMTEVSVLNVKKQASKSNIDIDNYLGDPAKIKAGRMETLVVYDSD

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01093596;
90% Identity: iTF_00124725;
80% Identity: -